Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
---|---|
Accession | NC_009445 |
Length | 7,456,587 |
Click here to switch to the map view.
The map label for this gene is glnP [H]
Identifier: 146340447
GI number: 146340447
Start: 3670017
End: 3670685
Strand: Direct
Name: glnP [H]
Synonym: BRADO3487
Alternate gene names: 146340447
Gene position: 3670017-3670685 (Clockwise)
Preceding gene: 146340446
Following gene: 146340455
Centisome position: 49.22
GC content: 62.33
Gene sequence:
>669_bases ATGAACTACACCTGGGATTTTGCCATTCTCGGCAAGTACAGCCATCTGTTCTGGGTGGGGCTGGGCTGGACCATGGCCTA TACGCTGGGCACGGTCCTGCTCGGCACGATCATCGGGCTGCTCGTCGGCATCATCCGGCTGCGACGTCCGGTCGTCATCG ACTGGCTGCTGATCGCCTATATCGAGCTGTTTCGCTGCACGCCGCTGCTGGTGCAGATCATCTGGTTCTACTACGCGTTT CCGGTGGTGATCGGCATCAACATCCCCGCGCATGTCGCGGCGGTCACAGTGCTGTCGCTATATGGCGGGGCTTTCTACGC CGAGATCATCCGGGGCAGCATCGAGAGCGTACCGCGCGGGCAGTGGGATGCGGCGCGCGCGCTGGGCCTGCGGCCGTGGC GGATGATGCGGCTCGTAATCCTGCCGCAGGCGCTGAAGCCGATGCTGGCGCCTTACGTCAACCAGTCGGTGACCCAACTG AAGAACACCTCGCTGGTGTCGGTGATCGCGGTGCCGGATCTGGTCTACAACGCGACGCTCATCAACGCGGATACCTACCG CCCGCTCGAAGTCTACACCATCATCGCGATCATCTATTTCGCGATCCTGTTCCCGGCGACGCTTCTCGGCCGCCGTTTCG AACGCGGCATGAGCTACGACAAGGCGTGA
Upstream 100 bases:
>100_bases GCCGCGATGATCGCGGGCGAGGCGCCGTCCTTCGACGCCGCCGCCTTCGCGCCGAGCCGGTATCTGTGATGGGCCGCGAC CGCCTCACGCCGGAGCCAAG
Downstream 100 bases:
>100_bases GGCGGGGAATATATCCGCCGTCATTGCGAGCGAAGCGAAGCAATCCAGGGCTGCAACCTGAGCTCTGGATTGCTTCGTCG CTACGCGCCTCGCAATGACG
Product: amino acid ABC transporter membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MNYTWDFAILGKYSHLFWVGLGWTMAYTLGTVLLGTIIGLLVGIIRLRRPVVIDWLLIAYIELFRCTPLLVQIIWFYYAF PVVIGINIPAHVAAVTVLSLYGGAFYAEIIRGSIESVPRGQWDAARALGLRPWRMMRLVILPQALKPMLAPYVNQSVTQL KNTSLVSVIAVPDLVYNATLINADTYRPLEVYTIIAIIYFAILFPATLLGRRFERGMSYDKA
Sequences:
>Translated_222_residues MNYTWDFAILGKYSHLFWVGLGWTMAYTLGTVLLGTIIGLLVGIIRLRRPVVIDWLLIAYIELFRCTPLLVQIIWFYYAF PVVIGINIPAHVAAVTVLSLYGGAFYAEIIRGSIESVPRGQWDAARALGLRPWRMMRLVILPQALKPMLAPYVNQSVTQL KNTSLVSVIAVPDLVYNATLINADTYRPLEVYTIIAIIYFAILFPATLLGRRFERGMSYDKA >Mature_222_residues MNYTWDFAILGKYSHLFWVGLGWTMAYTLGTVLLGTIIGLLVGIIRLRRPVVIDWLLIAYIELFRCTPLLVQIIWFYYAF PVVIGINIPAHVAAVTVLSLYGGAFYAEIIRGSIESVPRGQWDAARALGLRPWRMMRLVILPQALKPMLAPYVNQSVTQL KNTSLVSVIAVPDLVYNATLINADTYRPLEVYTIIAIIYFAILFPATLLGRRFERGMSYDKA
Specific function: Part of the ABC transporter complex glnHMPQ involved in glutamine transport. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788226, Length=202, Percent_Identity=34.1584158415842, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787030, Length=185, Percent_Identity=37.2972972972973, Blast_Score=118, Evalue=2e-28, Organism=Escherichia coli, GI1786873, Length=204, Percent_Identity=32.843137254902, Blast_Score=115, Evalue=2e-27, Organism=Escherichia coli, GI1788645, Length=221, Percent_Identity=33.0316742081448, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787086, Length=205, Percent_Identity=31.7073170731707, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87082239, Length=187, Percent_Identity=32.0855614973262, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786874, Length=219, Percent_Identity=27.8538812785388, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48994930, Length=160, Percent_Identity=35.625, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1788646, Length=186, Percent_Identity=26.3440860215054, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI1787087, Length=136, Percent_Identity=33.8235294117647, Blast_Score=72, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 25074; Mature: 25074
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYTWDFAILGKYSHLFWVGLGWTMAYTLGTVLLGTIIGLLVGIIRLRRPVVIDWLLIAY CCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH IELFRCTPLLVQIIWFYYAFPVVIGINIPAHVAAVTVLSLYGGAFYAEIIRGSIESVPRG HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QWDAARALGLRPWRMMRLVILPQALKPMLAPYVNQSVTQLKNTSLVSVIAVPDLVYNATL CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEE INADTYRPLEVYTIIAIIYFAILFPATLLGRRFERGMSYDKA ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNYTWDFAILGKYSHLFWVGLGWTMAYTLGTVLLGTIIGLLVGIIRLRRPVVIDWLLIAY CCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH IELFRCTPLLVQIIWFYYAFPVVIGINIPAHVAAVTVLSLYGGAFYAEIIRGSIESVPRG HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC QWDAARALGLRPWRMMRLVILPQALKPMLAPYVNQSVTQLKNTSLVSVIAVPDLVYNATL CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEE INADTYRPLEVYTIIAIIYFAILFPATLLGRRFERGMSYDKA ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7551042; 9384377 [H]