Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 146340261

GI number: 146340261

Start: 3480956

End: 3482455

Strand: Reverse

Name: radA [H]

Synonym: BRADO3282

Alternate gene names: 146340261

Gene position: 3482455-3480956 (Counterclockwise)

Preceding gene: 146340262

Following gene: 146340260

Centisome position: 46.7

GC content: 69.73

Gene sequence:

>1500_bases
ATGGCCAAGTCCACGCTCTCCTTCGTCTGCCAGAACTGCGGTGCGGCCTATACCCGCTGGCAGGGCAAGTGCGAGGCCTG
CGGCGAGTGGAACACGCTGGCCGAGGAAGACACCACGGGCGCGACCTCTGCGCCGGTGTCGCTGCGCTCCAAGCGCAAGG
GTCGCACCTTCCAGCTGGAATCGCTGACCGGCAAGAGCATCGATGCGCCGCGGCTGTCCTCCGGCATGACCGAGCTCGAC
CGCGTCACCGGCGGCGGTTTTGTGCGCGGCTCGATCCTCCTGGTCGGCGGCGATCCGGGCATCGGCAAGTCGACCCTGCT
GACCCAGGCGACCGCGATGATGGCGCGCGCCGGCCATCGCGCTGTCTACATCTCCGGCGAGGAGGCTGTCGCCCAGGTGC
GGCTCCGCGCCGAGCGGCTCGGGCTCGCGGATGCGCCGGTGCAGCTGGCGGCAGAGACCTCGGTCGAGGACATTATCTCC
ACTTTGTCCGAAGGCACGATGCCGCGGCTGATCGTGATCGATTCGATCCAGACGATGTGGACCGACACCGTCGAATCGGC
GCCGGGCACGGTCACCCAGGTGCGCGCCTCGGCGCAGAAGCTGATTCGCTTTGCCAAGAAATCCGGCGCGGCCATCATCC
TGGTCGGCCATGTCACCAAGGACGGCCAGATCGCCGGCCCCCGCGTCGTCGAGCACATGGTCGATGCGGTGCTGTCGTTC
GAGGGCGAGGGTTCTCAGCAGTTCCGCATCCTGCGCGCGGTCAAGAACCGCTTTGGCCCGACCGACGAGATCGGCGTCTT
CGAGATGACCGGTCTCGGCCTGCGCGAGGTCACCAACCCGTCCGAGCTGTTCCTGTCCGAGCGCGATCTCGGCAGCCCCG
GCACCGCCGTGTTCGCCGGCATCGAAGGCACCCGCCCCGTGCTGGTGGAAATGCAGGCGCTGGTGGCGCCGACCTCGCTC
GGCACGCCACGCCGCGCCGTCGTCGGCTGGGATCCGAGCCGGCTATCGATGGTGCTGGCGGTGCTGGAGGCGCATTGCGG
CGTCAAGCTGTCCGGCCACGACGTCTATCTCAACGTCGCCGGTGGCCTGCGCATTCACGAGCCCGCCGCCGATCTTGCCG
CGGCCGCCGCGCTGGTCTCGTCGCTGGTGAACGCGCCGCTGCCGCCCGATGCGGTGTATTTCGGCGAGATCTCGCTGTCG
GGCGCGGTGCGGCCGGTGGCGCAGACCTCGGCGCGCCTGAAGGAAGCCGCCAAGCTCGGCTTTCTGCGCGTCGTGCTGCC
GGAGCGCGCCCGCGGCGAGGTGGGCGGCGACGCCGGCCTGAACCTCAGTACCGTCGGCGGACTGACCTCGCTGGTGGCCG
ACATCGCCGCGCGCGGCACGCCCCGCGCGCGGCCAAACAGCGGCCGGGACGATGGCGATGCCGCCGAACAAGGCGGCCGC
AAGGCGAGCTATGCCGAAAAAAATGCCACACCGGCGAGATTCCGCCGTCAGGACGGCTAG

Upstream 100 bases:

>100_bases
CCCGACGTGTTCCGCCTAGTGATGGATGGCATCATGCTGGCCGCGGGCCTAAGTATGTTATGGAACGCCACCCACTCCTG
ACTGCATCGATTCTCCCGAC

Downstream 100 bases:

>100_bases
CCGGACCGTGACGTTCCCGTGACTCGCCGCTATACAACGCCGCATCCGGGCCCGCACGGGATCACGGACTTGCCGGGGAA
CCCTGCTTTCCTGCACGTGG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MAKSTLSFVCQNCGAAYTRWQGKCEACGEWNTLAEEDTTGATSAPVSLRSKRKGRTFQLESLTGKSIDAPRLSSGMTELD
RVTGGGFVRGSILLVGGDPGIGKSTLLTQATAMMARAGHRAVYISGEEAVAQVRLRAERLGLADAPVQLAAETSVEDIIS
TLSEGTMPRLIVIDSIQTMWTDTVESAPGTVTQVRASAQKLIRFAKKSGAAIILVGHVTKDGQIAGPRVVEHMVDAVLSF
EGEGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVTNPSELFLSERDLGSPGTAVFAGIEGTRPVLVEMQALVAPTSL
GTPRRAVVGWDPSRLSMVLAVLEAHCGVKLSGHDVYLNVAGGLRIHEPAADLAAAAALVSSLVNAPLPPDAVYFGEISLS
GAVRPVAQTSARLKEAAKLGFLRVVLPERARGEVGGDAGLNLSTVGGLTSLVADIAARGTPRARPNSGRDDGDAAEQGGR
KASYAEKNATPARFRRQDG

Sequences:

>Translated_499_residues
MAKSTLSFVCQNCGAAYTRWQGKCEACGEWNTLAEEDTTGATSAPVSLRSKRKGRTFQLESLTGKSIDAPRLSSGMTELD
RVTGGGFVRGSILLVGGDPGIGKSTLLTQATAMMARAGHRAVYISGEEAVAQVRLRAERLGLADAPVQLAAETSVEDIIS
TLSEGTMPRLIVIDSIQTMWTDTVESAPGTVTQVRASAQKLIRFAKKSGAAIILVGHVTKDGQIAGPRVVEHMVDAVLSF
EGEGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVTNPSELFLSERDLGSPGTAVFAGIEGTRPVLVEMQALVAPTSL
GTPRRAVVGWDPSRLSMVLAVLEAHCGVKLSGHDVYLNVAGGLRIHEPAADLAAAAALVSSLVNAPLPPDAVYFGEISLS
GAVRPVAQTSARLKEAAKLGFLRVVLPERARGEVGGDAGLNLSTVGGLTSLVADIAARGTPRARPNSGRDDGDAAEQGGR
KASYAEKNATPARFRRQDG
>Mature_498_residues
AKSTLSFVCQNCGAAYTRWQGKCEACGEWNTLAEEDTTGATSAPVSLRSKRKGRTFQLESLTGKSIDAPRLSSGMTELDR
VTGGGFVRGSILLVGGDPGIGKSTLLTQATAMMARAGHRAVYISGEEAVAQVRLRAERLGLADAPVQLAAETSVEDIIST
LSEGTMPRLIVIDSIQTMWTDTVESAPGTVTQVRASAQKLIRFAKKSGAAIILVGHVTKDGQIAGPRVVEHMVDAVLSFE
GEGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVTNPSELFLSERDLGSPGTAVFAGIEGTRPVLVEMQALVAPTSLG
TPRRAVVGWDPSRLSMVLAVLEAHCGVKLSGHDVYLNVAGGLRIHEPAADLAAAAALVSSLVNAPLPPDAVYFGEISLSG
AVRPVAQTSARLKEAAKLGFLRVVLPERARGEVGGDAGLNLSTVGGLTSLVADIAARGTPRARPNSGRDDGDAAEQGGRK
ASYAEKNATPARFRRQDG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=428, Percent_Identity=47.196261682243, Blast_Score=397, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 52349; Mature: 52218

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSTLSFVCQNCGAAYTRWQGKCEACGEWNTLAEEDTTGATSAPVSLRSKRKGRTFQLE
CCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEE
SLTGKSIDAPRLSSGMTELDRVTGGGFVRGSILLVGGDPGIGKSTLLTQATAMMARAGHR
CCCCCCCCCCCHHCCHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
AVYISGEEAVAQVRLRAERLGLADAPVQLAAETSVEDIISTLSEGTMPRLIVIDSIQTMW
EEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHCCCCCEEEEEECHHHHH
TDTVESAPGTVTQVRASAQKLIRFAKKSGAAIILVGHVTKDGQIAGPRVVEHMVDAVLSF
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHC
EGEGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVTNPSELFLSERDLGSPGTAVFAG
CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCCHHHHHEECCCCCCCCCEEEEC
IEGTRPVLVEMQALVAPTSLGTPRRAVVGWDPSRLSMVLAVLEAHCGVKLSGHDVYLNVA
CCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEECCCEEEEEEC
GGLRIHEPAADLAAAAALVSSLVNAPLPPDAVYFGEISLSGAVRPVAQTSARLKEAAKLG
CCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHC
FLRVVLPERARGEVGGDAGLNLSTVGGLTSLVADIAARGTPRARPNSGRDDGDAAEQGGR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCC
KASYAEKNATPARFRRQDG
CCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure 
AKSTLSFVCQNCGAAYTRWQGKCEACGEWNTLAEEDTTGATSAPVSLRSKRKGRTFQLE
CCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEE
SLTGKSIDAPRLSSGMTELDRVTGGGFVRGSILLVGGDPGIGKSTLLTQATAMMARAGHR
CCCCCCCCCCCHHCCHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
AVYISGEEAVAQVRLRAERLGLADAPVQLAAETSVEDIISTLSEGTMPRLIVIDSIQTMW
EEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHCCCCCEEEEEECHHHHH
TDTVESAPGTVTQVRASAQKLIRFAKKSGAAIILVGHVTKDGQIAGPRVVEHMVDAVLSF
HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHC
EGEGSQQFRILRAVKNRFGPTDEIGVFEMTGLGLREVTNPSELFLSERDLGSPGTAVFAG
CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHCCCHHHHHEECCCCCCCCCEEEEC
IEGTRPVLVEMQALVAPTSLGTPRRAVVGWDPSRLSMVLAVLEAHCGVKLSGHDVYLNVA
CCCCCHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEECCCEEEEEEC
GGLRIHEPAADLAAAAALVSSLVNAPLPPDAVYFGEISLSGAVRPVAQTSARLKEAAKLG
CCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHC
FLRVVLPERARGEVGGDAGLNLSTVGGLTSLVADIAARGTPRARPNSGRDDGDAAEQGGR
EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCC
KASYAEKNATPARFRRQDG
CCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA