Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is 146340097
Identifier: 146340097
GI number: 146340097
Start: 3302888
End: 3304210
Strand: Direct
Name: 146340097
Synonym: BRADO3106
Alternate gene names: NA
Gene position: 3302888-3304210 (Clockwise)
Preceding gene: 146340096
Following gene: 146340098
Centisome position: 44.29
GC content: 64.85
Gene sequence:
>1323_bases ATGACGAAATTCCTCACGGATCGACGGTCTCTGCTCAAGGGCGGCGCGACCTTGATGGCGGCGGCGGCGACGATGTCGGC CGACGAACTGCTCGGCTACGCCAAGGCCTGGGCGCAGACCTCGCCCTGGAAGCCGGAGCCCGGCGCCAAGGTCAACATGA TGCGCTGGAAGCGCTTCGTCGAGGCCGAGGACGTGGCCTTCATGAAGATCGTCGACGCCTTCCAGAAGGCCAATAACGTC ACCATCAATATCTCCAACGAATCCTATGACGACGTCCAGCCCAAGGCCTCGGTCGCGGCCAATACCGGGCAGGGGCTCGA CATGGTGTGGGGCCTCTACACGCTGCCCTTCCTGTTCTCCAACAAATGCGTGGATATGACCGACGTCGCCGACTACCTCG GCAAGAAGTGCGGCGGCTGGACCGACTCCGGCAAGGCCTACGGCATGCTCGACGGCAAGTGGATCGGCATTCCCGTGGCG GCCACCGGCGGCCTGATCAACTACCGCGTGGCCGCGGCCGAGAAGGCCGGCTTCAAGGAGTTTCCGAAGGACCTGGCCGG CATGTCCGAGTTCTTCAAGGCGATGAACAAGAACGGCACGCCCGGCGGCATGGCGCTCGGCCACGCCTCGGGCGACGCCA ATGGCTGGGTGCACTGGGCGCTGTGGGCGCATGGCGGCAACCTGATCGACAAGGACAACAAGGTCGTCATCAACTCGCCG GAGACCGCCAAGGCGCTCGAATACGTCAAGGGCCTGTACGACAATTTCGTGCCGGGCACCGCGTCGTGGAACGACTCCTC GAACAACAAGGCGTTCCTGGCCGGCCAGCTCTACACCACCGTCAACGGCATCTCGATCTACGTCACCGCCAAGAAGGAGG CGCCGCAGATCGCCGAGGACATGAACCACGCGCATCTGCCGCCCGGCCTGGACGGCAAGACCCGCGAGATGCATCTCGGC TTCCCGATCCTGGTGTTCAACTTCTCCAAGTACCCGCAGACCTGCAAGGCGTTCACCGCCTTCATGCTGGAGCCGGAGCA GTTCAACCCATGGATCGAGGCGGCGCAGGGCTATCTCTCGCACTTCCTCAAAGGCTACGACGCCAACCCGATCTGGACGG CCGATCCGAAGAACACGCCGTATCGCGACGTCGCCGCCACCGCGACCACGCCGGCCGGCGTCGGCAAGCTCGGCGAGGCG GCGGCTGCCGCGATCGCCGACTTCGTCCTGGTCGACATGTTCGCGAACTACTGCACCGGCCGCGAGGACGTGAAGACGGC GATGGCGAGCGCCGAGCGGTCCGCCAAGCGCATCTTCCGCTGA
Upstream 100 bases:
>100_bases GATCCGGCCGCGCGGCGCGGACTGACCAAGCAGACCAATTAAAAAGGCCGGAAAACCGGCAAAAAACAAACAAGCAAGAG TCAACGGGAGAAAACTTCAG
Downstream 100 bases:
>100_bases GCCGCGGCTACGTAGGGTGGGCAAAGGCGCGCCGGGATAGAGGAGAAATCCCGGATCTCTCCCGCGCCGTGCCCACCGAG TTTGTCGCACCACCGAATGG
Product: putative ABC transporter periplasmic-binding protein
Products: NA
Alternate protein names: Sugar ABC Transporter Periplasmic Protein; Sugar ABC Transporter
Number of amino acids: Translated: 440; Mature: 439
Protein sequence:
>440_residues MTKFLTDRRSLLKGGATLMAAAATMSADELLGYAKAWAQTSPWKPEPGAKVNMMRWKRFVEAEDVAFMKIVDAFQKANNV TINISNESYDDVQPKASVAANTGQGLDMVWGLYTLPFLFSNKCVDMTDVADYLGKKCGGWTDSGKAYGMLDGKWIGIPVA ATGGLINYRVAAAEKAGFKEFPKDLAGMSEFFKAMNKNGTPGGMALGHASGDANGWVHWALWAHGGNLIDKDNKVVINSP ETAKALEYVKGLYDNFVPGTASWNDSSNNKAFLAGQLYTTVNGISIYVTAKKEAPQIAEDMNHAHLPPGLDGKTREMHLG FPILVFNFSKYPQTCKAFTAFMLEPEQFNPWIEAAQGYLSHFLKGYDANPIWTADPKNTPYRDVAATATTPAGVGKLGEA AAAAIADFVLVDMFANYCTGREDVKTAMASAERSAKRIFR
Sequences:
>Translated_440_residues MTKFLTDRRSLLKGGATLMAAAATMSADELLGYAKAWAQTSPWKPEPGAKVNMMRWKRFVEAEDVAFMKIVDAFQKANNV TINISNESYDDVQPKASVAANTGQGLDMVWGLYTLPFLFSNKCVDMTDVADYLGKKCGGWTDSGKAYGMLDGKWIGIPVA ATGGLINYRVAAAEKAGFKEFPKDLAGMSEFFKAMNKNGTPGGMALGHASGDANGWVHWALWAHGGNLIDKDNKVVINSP ETAKALEYVKGLYDNFVPGTASWNDSSNNKAFLAGQLYTTVNGISIYVTAKKEAPQIAEDMNHAHLPPGLDGKTREMHLG FPILVFNFSKYPQTCKAFTAFMLEPEQFNPWIEAAQGYLSHFLKGYDANPIWTADPKNTPYRDVAATATTPAGVGKLGEA AAAAIADFVLVDMFANYCTGREDVKTAMASAERSAKRIFR >Mature_439_residues TKFLTDRRSLLKGGATLMAAAATMSADELLGYAKAWAQTSPWKPEPGAKVNMMRWKRFVEAEDVAFMKIVDAFQKANNVT INISNESYDDVQPKASVAANTGQGLDMVWGLYTLPFLFSNKCVDMTDVADYLGKKCGGWTDSGKAYGMLDGKWIGIPVAA TGGLINYRVAAAEKAGFKEFPKDLAGMSEFFKAMNKNGTPGGMALGHASGDANGWVHWALWAHGGNLIDKDNKVVINSPE TAKALEYVKGLYDNFVPGTASWNDSSNNKAFLAGQLYTTVNGISIYVTAKKEAPQIAEDMNHAHLPPGLDGKTREMHLGF PILVFNFSKYPQTCKAFTAFMLEPEQFNPWIEAAQGYLSHFLKGYDANPIWTADPKNTPYRDVAATATTPAGVGKLGEAA AAAIADFVLVDMFANYCTGREDVKTAMASAERSAKRIFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47808; Mature: 47677
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKFLTDRRSLLKGGATLMAAAATMSADELLGYAKAWAQTSPWKPEPGAKVNMMRWKRFV CCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHH EAEDVAFMKIVDAFQKANNVTINISNESYDDVQPKASVAANTGQGLDMVWGLYTLPFLFS HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHC NKCVDMTDVADYLGKKCGGWTDSGKAYGMLDGKWIGIPVAATGGLINYRVAAAEKAGFKE CCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEEEECCCCEEEEEEHHHHHCCHHH FPKDLAGMSEFFKAMNKNGTPGGMALGHASGDANGWVHWALWAHGGNLIDKDNKVVINSP HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCEECCCCEEEEECC ETAKALEYVKGLYDNFVPGTASWNDSSNNKAFLAGQLYTTVNGISIYVTAKKEAPQIAED CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCHHHHH MNHAHLPPGLDGKTREMHLGFPILVFNFSKYPQTCKAFTAFMLEPEQFNPWIEAAQGYLS CCCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHCCCHHCCHHHHHHHHHHH HFLKGYDANPIWTADPKNTPYRDVAATATTPAGVGKLGEAAAAAIADFVLVDMFANYCTG HHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC REDVKTAMASAERSAKRIFR HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TKFLTDRRSLLKGGATLMAAAATMSADELLGYAKAWAQTSPWKPEPGAKVNMMRWKRFV CCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHH EAEDVAFMKIVDAFQKANNVTINISNESYDDVQPKASVAANTGQGLDMVWGLYTLPFLFS HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHC NKCVDMTDVADYLGKKCGGWTDSGKAYGMLDGKWIGIPVAATGGLINYRVAAAEKAGFKE CCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEEEECCCCEEEEEEHHHHHCCHHH FPKDLAGMSEFFKAMNKNGTPGGMALGHASGDANGWVHWALWAHGGNLIDKDNKVVINSP HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCEECCCCEEEEECC ETAKALEYVKGLYDNFVPGTASWNDSSNNKAFLAGQLYTTVNGISIYVTAKKEAPQIAED CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCHHHHH MNHAHLPPGLDGKTREMHLGFPILVFNFSKYPQTCKAFTAFMLEPEQFNPWIEAAQGYLS CCCCCCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHCCCHHCCHHHHHHHHHHH HFLKGYDANPIWTADPKNTPYRDVAATATTPAGVGKLGEAAAAAIADFVLVDMFANYCTG HHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC REDVKTAMASAERSAKRIFR HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA