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The map label for this gene is algU [H]

Identifier: 146339675

GI number: 146339675

Start: 2872212

End: 2872781

Strand: Direct

Name: algU [H]

Synonym: BRADO2670

Alternate gene names: 146339675

Gene position: 2872212-2872781 (Clockwise)

Preceding gene: 146339672

Following gene: 146339676

Centisome position: 38.52

GC content: 60.88

Gene sequence:

>570_bases
TTGAGCGTGACAGCAGCGGCGTCAGATGAAACCCTGATTGCCCGGATCGCTCAAGGCGACCGGCTCGCCATGCAGGTGCT
GTATGGACGGCACCATGTCAGGGTGTACCGTTTCGGGCTGCGGCTCGTACGGGACGAACAGGTCGCGGAAGATCTCATCA
GCGAGGTCTTTCTCGACGTGTGGCGTCAGGCCGGCAAGTTTGAGGGCCGCTCTGCCGTCTCAACCTGGCTCCTGGCCATT
ACGCGGTTCAAGGCCCTTTCGGCACTTCGGCGCCGCAAGGACGTTGAACTGGAGGACGACGCCGCGAACGCGATCGAGGA
CACGTCCGACGATCCGGAAGTGGCGGCGCAGAAGAAGAATACCGGAGAAGCCTTGCGCAAGTGCCTGACTGCGCTTTCGC
CTGATCACCGGGAGATCGTCGATCTCGTCTACTACCATGAGAAGTCCGTGGAGGAGGTGGCCGAGATCGTCGGAATTCCG
GAAAACACCGTCAAGACGCGCCTGTTCTATGCGCGCAAGAAATTGGCCGAACTCCTGAAGGCGGCCGGCATTGAAAGAGG
CTGGCCATGA

Upstream 100 bases:

>100_bases
GCTCACATCCGGGGACGTATCTTTCCGGTATTTTGAGGAATTTTGCGGTTGAATTCGAACCGCAATCTCATTCCTCCAGA
CCAATCTCGCGAGACGGCCA

Downstream 100 bases:

>100_bases
TGGCTTTGAGCAGGAAAATGCTGGAGCAAGAGCCCGGTGACATCGAACTGCTGCTGCCGTGGTACGCTGCCGGCACGCTG
AGCGCGCGCGACATGCGCCG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSVTAAASDETLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDVWRQAGKFEGRSAVSTWLLAI
TRFKALSALRRRKDVELEDDAANAIEDTSDDPEVAAQKKNTGEALRKCLTALSPDHREIVDLVYYHEKSVEEVAEIVGIP
ENTVKTRLFYARKKLAELLKAAGIERGWP

Sequences:

>Translated_189_residues
MSVTAAASDETLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDVWRQAGKFEGRSAVSTWLLAI
TRFKALSALRRRKDVELEDDAANAIEDTSDDPEVAAQKKNTGEALRKCLTALSPDHREIVDLVYYHEKSVEEVAEIVGIP
ENTVKTRLFYARKKLAELLKAAGIERGWP
>Mature_188_residues
SVTAAASDETLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDVWRQAGKFEGRSAVSTWLLAIT
RFKALSALRRRKDVELEDDAANAIEDTSDDPEVAAQKKNTGEALRKCLTALSPDHREIVDLVYYHEKSVEEVAEIVGIPE
NTVKTRLFYARKKLAELLKAAGIERGWP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21336; Mature: 21204

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTAAASDETLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRQAGKFEGRSAVSTWLLAITRFKALSALRRRKDVELEDDAANAIEDTSDDPEVAAQKKN
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHCCC
TGEALRKCLTALSPDHREIVDLVYYHEKSVEEVAEIVGIPENTVKTRLFYARKKLAELLK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AAGIERGWP
HCCCCCCCC
>Mature Secondary Structure 
SVTAAASDETLIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQVAEDLISEVFLDV
CCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRQAGKFEGRSAVSTWLLAITRFKALSALRRRKDVELEDDAANAIEDTSDDPEVAAQKKN
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHCCC
TGEALRKCLTALSPDHREIVDLVYYHEKSVEEVAEIVGIPENTVKTRLFYARKKLAELLK
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
AAGIERGWP
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]