Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is ybjT [C]
Identifier: 146339507
GI number: 146339507
Start: 2665212
End: 2666153
Strand: Direct
Name: ybjT [C]
Synonym: BRADO2496
Alternate gene names: 146339507
Gene position: 2665212-2666153 (Clockwise)
Preceding gene: 146339506
Following gene: 146339510
Centisome position: 35.74
GC content: 69.64
Gene sequence:
>942_bases ATGCTCGGCGCCACCGGGACGATCGGCCGTGCCACCGTGCGTGCGCTCGTCGCGCGCGGGCACGAGGTGGTCTGCTTCGT CCGCCCACGCAGCGAGGCCATCACGATTCCTGGCGCCACCGTCAGGACCGGCGACGTCACCGATCCCGCCTCGCTCGTGC GCGACGGCTTTCGCGGCGAGCGCTTCGATGCCGTCGTGTCCTGCATGGCGTCGCGGACCGGCGTGCCCCGGGATGCCCAG GCAATCGACTATCAGGCGCATGTCAACGTGCTGGAAGCGGCCCGCGCGGCAGGCGTCACGCAATTCGTGCTGTTGTCCGC CATCTGCGTGCAGAAGCCGCTGCTGGCGTTTCAGCAGGCCAAGCTCGCGTTCGAGGCGCAGCTGGTCGCGGCGGGCCTGA CCTACTCGATCGTCCGTCCCACCGCGTTCTTCAAGTCGCTGTCGGGACAGGTCGCGCGGGTGCAGCAGGGCCGGCCCTAC CTGGTGTTCGGCGATGGCCGCCTCACCGCGTGCAAGCCGATCAGCGATGCCGATCTCGGCGCCTATCTCGCCGGCTGTCT CGATGATGAGGCGCTCTGGAACCGCGTGCTGCCGATCGGCGGCCCCGGGCCCGCCATCACCCCGCTCGATCAGGCCGAGC ATCTGTTCGCGCTGCTCGGCCGCAAGCCGAACATCCGTCGCGTCCCGGTGGGCCTGCTCGATGCCATCATCGGCGGGCTC GACGTCGCCAGGCGGATCGTGCCGTCGCTCGCCGACAAGGCCGAACTCGCCCGCATCGGCCGCTACTACGCCACCGAATC CATGCTGGTGATGAACCCCGCCACCGGCCGCTACGATGCCGACGCGACGCCGTCCACGGGATCGGACACGTTGTTCGACT ACTACGCCCGGCTGATCCGCGGCGAAGCCGAGGCCGAACGCGGCGATCACGCGGTGTTCTAA
Upstream 100 bases:
>100_bases TGTGGTATAGGTCGAACTGGTTCTCAGAGACGCATTTCTGCCTATGAGCTCGCCGGCCGTTCCTTCCGCATCCCACTCGC TCTATCCCCGCCGCGTGTTC
Downstream 100 bases:
>100_bases GCCCATCTCTTTCCGCGTCATTGCGAGGAGCGAAGCGACGAAGCAATCCAGGGCCGCACGCGTGGCCCTGGATTGCTTCG CTACGCGTAACTGCCCAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NAD-Dependent Epimerase/Dehydratase; NmrA-Like Family; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; NAD Dependent Epimerase/Dehydratase Family Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; NmrA-Like; NAD Dependent Epimerase/Dehydratase; Nucleoside-Diphosphate-Sugar Epimerases; Dtdp-Glucose-46-Dehydratase; Oxidoreductase; Nucleoside-Diphosphate-Sugar Epimerase; 3 8-Divinyl Protochlorophyllide A 8-Vinyl Reductase; NADH-Ubiquinone Oxidoreductase; Glucose/Sorbosone Dehydrogenase-Like Protein; NmrA-Like Family Protein
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MLGATGTIGRATVRALVARGHEVVCFVRPRSEAITIPGATVRTGDVTDPASLVRDGFRGERFDAVVSCMASRTGVPRDAQ AIDYQAHVNVLEAARAAGVTQFVLLSAICVQKPLLAFQQAKLAFEAQLVAAGLTYSIVRPTAFFKSLSGQVARVQQGRPY LVFGDGRLTACKPISDADLGAYLAGCLDDEALWNRVLPIGGPGPAITPLDQAEHLFALLGRKPNIRRVPVGLLDAIIGGL DVARRIVPSLADKAELARIGRYYATESMLVMNPATGRYDADATPSTGSDTLFDYYARLIRGEAEAERGDHAVF
Sequences:
>Translated_313_residues MLGATGTIGRATVRALVARGHEVVCFVRPRSEAITIPGATVRTGDVTDPASLVRDGFRGERFDAVVSCMASRTGVPRDAQ AIDYQAHVNVLEAARAAGVTQFVLLSAICVQKPLLAFQQAKLAFEAQLVAAGLTYSIVRPTAFFKSLSGQVARVQQGRPY LVFGDGRLTACKPISDADLGAYLAGCLDDEALWNRVLPIGGPGPAITPLDQAEHLFALLGRKPNIRRVPVGLLDAIIGGL DVARRIVPSLADKAELARIGRYYATESMLVMNPATGRYDADATPSTGSDTLFDYYARLIRGEAEAERGDHAVF >Mature_313_residues MLGATGTIGRATVRALVARGHEVVCFVRPRSEAITIPGATVRTGDVTDPASLVRDGFRGERFDAVVSCMASRTGVPRDAQ AIDYQAHVNVLEAARAAGVTQFVLLSAICVQKPLLAFQQAKLAFEAQLVAAGLTYSIVRPTAFFKSLSGQVARVQQGRPY LVFGDGRLTACKPISDADLGAYLAGCLDDEALWNRVLPIGGPGPAITPLDQAEHLFALLGRKPNIRRVPVGLLDAIIGGL DVARRIVPSLADKAELARIGRYYATESMLVMNPATGRYDADATPSTGSDTLFDYYARLIRGEAEAERGDHAVF
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33396; Mature: 33396
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGATGTIGRATVRALVARGHEVVCFVRPRSEAITIPGATVRTGDVTDPASLVRDGFRGE CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCEEECCCCCCHHHHHHCCCCCH RFDAVVSCMASRTGVPRDAQAIDYQAHVNVLEAARAAGVTQFVLLSAICVQKPLLAFQQA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH KLAFEAQLVAAGLTYSIVRPTAFFKSLSGQVARVQQGRPYLVFGDGRLTACKPISDADLG HHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCEEEECCCCCCHHH AYLAGCLDDEALWNRVLPIGGPGPAITPLDQAEHLFALLGRKPNIRRVPVGLLDAIIGGL HHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH DVARRIVPSLADKAELARIGRYYATESMLVMNPATGRYDADATPSTGSDTLFDYYARLIR HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH GEAEAERGDHAVF CCHHHCCCCCCCC >Mature Secondary Structure MLGATGTIGRATVRALVARGHEVVCFVRPRSEAITIPGATVRTGDVTDPASLVRDGFRGE CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCEEECCCCCCHHHHHHCCCCCH RFDAVVSCMASRTGVPRDAQAIDYQAHVNVLEAARAAGVTQFVLLSAICVQKPLLAFQQA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH KLAFEAQLVAAGLTYSIVRPTAFFKSLSGQVARVQQGRPYLVFGDGRLTACKPISDADLG HHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHCCCCEEEECCCCEEEECCCCCCHHH AYLAGCLDDEALWNRVLPIGGPGPAITPLDQAEHLFALLGRKPNIRRVPVGLLDAIIGGL HHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH DVARRIVPSLADKAELARIGRYYATESMLVMNPATGRYDADATPSTGSDTLFDYYARLIR HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH GEAEAERGDHAVF CCHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA