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The map label for this gene is yciR [C]

Identifier: 146339440

GI number: 146339440

Start: 2584643

End: 2585863

Strand: Direct

Name: yciR [C]

Synonym: BRADO2426

Alternate gene names: 146339440

Gene position: 2584643-2585863 (Clockwise)

Preceding gene: 146339439

Following gene: 146339442

Centisome position: 34.66

GC content: 64.37

Gene sequence:

>1221_bases
ATGTTTGGAGCTCGCGCCATGCTGTCATCTTGGATAGGAACGGACCTTCCGCCAGTTTCCGACGCAGTTCGTGTTGAAGT
ACTCAAAACGCTACACAGCTCGCTATTGCCGTTCGTGCTGATGGCGGTGTCCCTCACCATCGCCAGCGGGATCATTGCGT
GGCATATGGGTGATGTCGTCACGGGCATGCTGGGTGTTCTCGGCGTGATCTTGACCCTGCTGCGGATCCGCGGCGTGCTG
TCCTTCCGGCGGCGCATGGCCGGGGAGCGGCCTCCGGCTACGGATGAGATCCTGCGGCTTCGCCGCCCGTGTGCGATCGC
CACCCTCAGCGTCTCGCTGGTGGTCGGCCTGCTGGCCGCGCGCAGTCTGCAGCTTGGCGATCCGACGTGTACGACCTTCG
CGCTCAGCTTCGGCTTCGGGTTCGGCGCCGGCCTCATCGCGCGACTGACGCTATTGCCACAGCTCGCAATTGCTGCCTTG
AGCGTTCTGGGTCTTCCGCCCATCGCCGTGGCCCTGATGCAGTCAGACCTCCCGCATCTCGGGCTTGCTATGATGATGAT
CATCTTCCTCTTCGCCGCCTTTGAGCTGCTGCGGCTGAGCTTCAGGTCGTCGATGAGCCAGATCCATCTCCGGGAGCAGT
TCGAGCGGCTGTCTCGCATCGATCCAATGACGGGAGTCCACAACCGCACGGCGCTGGCGACCGATCTTCCGGCCCTGATC
GCGGACGGCAACAGCCAGATGATCGCGATCTACGCCATCGATCTCGATCACTTCAAGGCGGCCAACGACCGGTTCGGCCA
CCCCGTCGGCGATGCACTGCTCAAGCAGGTCGCTTCGCGGCTGACCTCGCTGCTGGACTCCGGCGGTCTTATCGTCAGGA
TGGGAGGCGACGAGTTTATCCTCGCGGACAACTCGCTTCGCTCACGAGCGGCGGCGCGGTCATTGGCGGAGCGCATCGTG
GACGTCGTTGCGGCGCCCTATTACATCGACGGGCATGAGGTGGTGATTGGCGTCAGCGTCGGCGCGGCGCTGTCGGATGG
CCACGTTAGCAGCGCCGAGGCGCTGCTGTCGCAGGCCGACCGCGCGCTGTATCAGGCGAAAGCTGCCCGGGGCGGGTTCG
TCCTCGCGGATGCTCCCGGAATGGACAAGTCGCACCGCATCACGCAGCGCTCCGGTCGAGGGAATGCGGAGACGACGATG
TCTGCTGCGTCCGCAGCGTGA

Upstream 100 bases:

>100_bases
AAGACGATCTCCCGAGTCTCGGGACGCGGGGGACAATGTCGTTAAAGTTTGAATCTTCCGTCGTGCCGTAATTTTACCGG
CCGTGGTGCAGCATGGCGCA

Downstream 100 bases:

>100_bases
GCTTGCGGGTAAGACGGCGGATGTCGGGATTTGATGCCGTCGGACGCGAGGGCTGGATCGTGGCGAGTCAGCCCTCGCGA
GGACGCGACGTCGTCTACTC

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MFGARAMLSSWIGTDLPPVSDAVRVEVLKTLHSSLLPFVLMAVSLTIASGIIAWHMGDVVTGMLGVLGVILTLLRIRGVL
SFRRRMAGERPPATDEILRLRRPCAIATLSVSLVVGLLAARSLQLGDPTCTTFALSFGFGFGAGLIARLTLLPQLAIAAL
SVLGLPPIAVALMQSDLPHLGLAMMMIIFLFAAFELLRLSFRSSMSQIHLREQFERLSRIDPMTGVHNRTALATDLPALI
ADGNSQMIAIYAIDLDHFKAANDRFGHPVGDALLKQVASRLTSLLDSGGLIVRMGGDEFILADNSLRSRAAARSLAERIV
DVVAAPYYIDGHEVVIGVSVGAALSDGHVSSAEALLSQADRALYQAKAARGGFVLADAPGMDKSHRITQRSGRGNAETTM
SAASAA

Sequences:

>Translated_406_residues
MFGARAMLSSWIGTDLPPVSDAVRVEVLKTLHSSLLPFVLMAVSLTIASGIIAWHMGDVVTGMLGVLGVILTLLRIRGVL
SFRRRMAGERPPATDEILRLRRPCAIATLSVSLVVGLLAARSLQLGDPTCTTFALSFGFGFGAGLIARLTLLPQLAIAAL
SVLGLPPIAVALMQSDLPHLGLAMMMIIFLFAAFELLRLSFRSSMSQIHLREQFERLSRIDPMTGVHNRTALATDLPALI
ADGNSQMIAIYAIDLDHFKAANDRFGHPVGDALLKQVASRLTSLLDSGGLIVRMGGDEFILADNSLRSRAAARSLAERIV
DVVAAPYYIDGHEVVIGVSVGAALSDGHVSSAEALLSQADRALYQAKAARGGFVLADAPGMDKSHRITQRSGRGNAETTM
SAASAA
>Mature_406_residues
MFGARAMLSSWIGTDLPPVSDAVRVEVLKTLHSSLLPFVLMAVSLTIASGIIAWHMGDVVTGMLGVLGVILTLLRIRGVL
SFRRRMAGERPPATDEILRLRRPCAIATLSVSLVVGLLAARSLQLGDPTCTTFALSFGFGFGAGLIARLTLLPQLAIAAL
SVLGLPPIAVALMQSDLPHLGLAMMMIIFLFAAFELLRLSFRSSMSQIHLREQFERLSRIDPMTGVHNRTALATDLPALI
ADGNSQMIAIYAIDLDHFKAANDRFGHPVGDALLKQVASRLTSLLDSGGLIVRMGGDEFILADNSLRSRAAARSLAERIV
DVVAAPYYIDGHEVVIGVSVGAALSDGHVSSAEALLSQADRALYQAKAARGGFVLADAPGMDKSHRITQRSGRGNAETTM
SAASAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=175, Percent_Identity=36, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=38.2352941176471, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=38.8535031847134, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=183, Percent_Identity=35.5191256830601, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=193, Percent_Identity=31.6062176165803, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787262, Length=208, Percent_Identity=29.3269230769231, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787802, Length=198, Percent_Identity=28.2828282828283, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786584, Length=220, Percent_Identity=28.1818181818182, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=34.9462365591398, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082007, Length=163, Percent_Identity=34.3558282208589, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=180, Percent_Identity=28.3333333333333, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 43084; Mature: 43084

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]