| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146339410
Identifier: 146339410
GI number: 146339410
Start: 2553652
End: 2554980
Strand: Direct
Name: 146339410
Synonym: BRADO2395
Alternate gene names: NA
Gene position: 2553652-2554980 (Clockwise)
Preceding gene: 146339409
Following gene: 146339411
Centisome position: 34.25
GC content: 69.53
Gene sequence:
>1329_bases ATGACGAGACGGATCACGACGGCTGCCGCGGCCATCCTTGGCGTAGTGGTGACGGCCGCTGCCGCCGAGCCTGGTGTGCT CAAGGGCAAGGACGCGTTCGGCGGCTGGCAGGGAGATGCGCCAGGCACTGTTCGCCTCATCCGTCCCGAGAACCTGCCGA AGCCCGGAGCGACGGCGTCTGCCGCCAACGTCTCGCGCGTGGTGCAGCGGCCGGCCTCTGCTGTGCCCAAGGTGCCCGAC GGCTTCAAGGTCGCGTTGTTCGCCGAGGGGCTGAGCGGGCCGCGCATCATCCGCACCGCGCCCAACGGCGACATCTTCGT CGCCGAGACGCGCGCGGGCCGGGTCCGCGTGCTGCGGCCGAACGAGGATGGCAGCAAGGCCGAGGCGACGGAGATCTTCG CCGATCGTCTCGGCCATCCCTTCGGCATCGCGTTCTACCCGATCGCCGATCCGCAATGGGTCTATGTCGCGAGCACCGAG CGGGTGATGCGCTTTCCCTATCGCACGGGCGACATGAAGGCGTCCGGCGCGATGCAGGTCGTCGTGCCCGATCTCCCCGC AGGCTATGGCCACTCCACCCGCGACATTGTCTTCACCAGAGATGGCCAGCGCATGCTGGTCTCGGTCGGCTCGGCCGGCA ATGTCGGCGAAGCCCTGGGCGAGCCGGCCGGCGGCCTCGCCGCCTGGATCAAGGCGCATCCGCTCGGCGCCGCCTGGGGC GGGGAGACCGATCGCGCCGGCGTGCTGGCGTTCGATCCCGAGGGCAAGAGCCGCAGCCTGTTCGCGAGCGGCATCCGCAA CTGCGTCGGCCTCGCCATCCAGCCCGCGACCGGCATGCCATGGTGCTCGACCAATGAGCGCGACGGGCTCGGCGATGATC TCGTCCCGGACTACGTCACGCGGGTGAAGGAGGGCGGCTTCTATGGCTGGCCCTGGTACTACATGGGCGACAACCCCGAT CCGCGCCATGCCGGCGAGCGGCCGGATCTCAAGGGCCAGATCACGGTGCCCGACGTGCTGCTGCAGGCGCATTCCGCCTC GCTGGGCCTGACCTTCTACGACGCCGACCTGTTTCCGCCGGAGTATCGCGGCGATGGCTTCGCGGCCGAGCACGGCTCGT GGAACCGGTCGAAGCGCACCGGCTACAAGGTGATCCGCATCCGGCTGAAGGACGGCATGCCCACGGGCGAGTACGAGGAC TTCGTCACCGGCTTCGTCGTCAATGATCGCGAAGTGTGGGGCCGGCCGGTCGGCGTCACCGTGGCGCGCGACGGCAGCCT GCTGATCTCCGAGGACGGCAACGGCACGATCTGGCGCGTCAGCCGCTGA
Upstream 100 bases:
>100_bases GCTCGGCGCGCTGTCGTGATCGCGTTGGTCTGCCGCCCCGCGTGATCTCGGAGCCGGGACGGGGGTAGGCTGCCGGATAC GCGAGACGGATGAGGACCAC
Downstream 100 bases:
>100_bases TGTGTGTCGTGCGGCGCAGGAACCTCGGCATCGCAACGCGGTTATGAGCGGGGTTGAACGCCGGAAGACTGCATGAACAT CTTCGATCCGAAGGGACCGA
Product: putative L-sorbosone dehydrogenase
Products: NA
Alternate protein names: SNDH [H]
Number of amino acids: Translated: 442; Mature: 441
Protein sequence:
>442_residues MTRRITTAAAAILGVVVTAAAAEPGVLKGKDAFGGWQGDAPGTVRLIRPENLPKPGATASAANVSRVVQRPASAVPKVPD GFKVALFAEGLSGPRIIRTAPNGDIFVAETRAGRVRVLRPNEDGSKAEATEIFADRLGHPFGIAFYPIADPQWVYVASTE RVMRFPYRTGDMKASGAMQVVVPDLPAGYGHSTRDIVFTRDGQRMLVSVGSAGNVGEALGEPAGGLAAWIKAHPLGAAWG GETDRAGVLAFDPEGKSRSLFASGIRNCVGLAIQPATGMPWCSTNERDGLGDDLVPDYVTRVKEGGFYGWPWYYMGDNPD PRHAGERPDLKGQITVPDVLLQAHSASLGLTFYDADLFPPEYRGDGFAAEHGSWNRSKRTGYKVIRIRLKDGMPTGEYED FVTGFVVNDREVWGRPVGVTVARDGSLLISEDGNGTIWRVSR
Sequences:
>Translated_442_residues MTRRITTAAAAILGVVVTAAAAEPGVLKGKDAFGGWQGDAPGTVRLIRPENLPKPGATASAANVSRVVQRPASAVPKVPD GFKVALFAEGLSGPRIIRTAPNGDIFVAETRAGRVRVLRPNEDGSKAEATEIFADRLGHPFGIAFYPIADPQWVYVASTE RVMRFPYRTGDMKASGAMQVVVPDLPAGYGHSTRDIVFTRDGQRMLVSVGSAGNVGEALGEPAGGLAAWIKAHPLGAAWG GETDRAGVLAFDPEGKSRSLFASGIRNCVGLAIQPATGMPWCSTNERDGLGDDLVPDYVTRVKEGGFYGWPWYYMGDNPD PRHAGERPDLKGQITVPDVLLQAHSASLGLTFYDADLFPPEYRGDGFAAEHGSWNRSKRTGYKVIRIRLKDGMPTGEYED FVTGFVVNDREVWGRPVGVTVARDGSLLISEDGNGTIWRVSR >Mature_441_residues TRRITTAAAAILGVVVTAAAAEPGVLKGKDAFGGWQGDAPGTVRLIRPENLPKPGATASAANVSRVVQRPASAVPKVPDG FKVALFAEGLSGPRIIRTAPNGDIFVAETRAGRVRVLRPNEDGSKAEATEIFADRLGHPFGIAFYPIADPQWVYVASTER VMRFPYRTGDMKASGAMQVVVPDLPAGYGHSTRDIVFTRDGQRMLVSVGSAGNVGEALGEPAGGLAAWIKAHPLGAAWGG ETDRAGVLAFDPEGKSRSLFASGIRNCVGLAIQPATGMPWCSTNERDGLGDDLVPDYVTRVKEGGFYGWPWYYMGDNPDP RHAGERPDLKGQITVPDVLLQAHSASLGLTFYDADLFPPEYRGDGFAAEHGSWNRSKRTGYKVIRIRLKDGMPTGEYEDF VTGFVVNDREVWGRPVGVTVARDGSLLISEDGNGTIWRVSR
Specific function: Converts L-sorbosone into 2-keto-L-gulonic acid (2KGA) [H]
COG id: COG2133
COG function: function code G; Glucose/sorbosone dehydrogenases
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.burgdorferi BB024 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR012938 - InterPro: IPR011041 [H]
Pfam domain/function: PF07995 GSDH [H]
EC number: NA
Molecular weight: Translated: 47335; Mature: 47204
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRITTAAAAILGVVVTAAAAEPGVLKGKDAFGGWQGDAPGTVRLIRPENLPKPGATAS CCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC AANVSRVVQRPASAVPKVPDGFKVALFAEGLSGPRIIRTAPNGDIFVAETRAGRVRVLRP HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEECC NEDGSKAEATEIFADRLGHPFGIAFYPIADPQWVYVASTERVMRFPYRTGDMKASGAMQV CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCEEEECCCCCCCCCCCCEEEE VVPDLPAGYGHSTRDIVFTRDGQRMLVSVGSAGNVGEALGEPAGGLAAWIKAHPLGAAWG EECCCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHCCCCCCCEEHEECCCCCCCCC GETDRAGVLAFDPEGKSRSLFASGIRNCVGLAIQPATGMPWCSTNERDGLGDDLVPDYVT CCCCCCCEEEECCCCCCCHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCHHHHH RVKEGGFYGWPWYYMGDNPDPRHAGERPDLKGQITVPDVLLQAHSASLGLTFYDADLFPP HHHCCCEECCCEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECCCCCC EYRGDGFAAEHGSWNRSKRTGYKVIRIRLKDGMPTGEYEDFVTGFVVNDREVWGRPVGVT CCCCCCEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHEEEEEEECHHHCCCCEEEE VARDGSLLISEDGNGTIWRVSR EECCCCEEEEECCCCCEEEECC >Mature Secondary Structure TRRITTAAAAILGVVVTAAAAEPGVLKGKDAFGGWQGDAPGTVRLIRPENLPKPGATAS CCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC AANVSRVVQRPASAVPKVPDGFKVALFAEGLSGPRIIRTAPNGDIFVAETRAGRVRVLRP HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEECC NEDGSKAEATEIFADRLGHPFGIAFYPIADPQWVYVASTERVMRFPYRTGDMKASGAMQV CCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCEEEECCCCCCCCCCCCEEEE VVPDLPAGYGHSTRDIVFTRDGQRMLVSVGSAGNVGEALGEPAGGLAAWIKAHPLGAAWG EECCCCCCCCCCCCEEEEEECCCEEEEEECCCCCHHHHHCCCCCCCEEHEECCCCCCCCC GETDRAGVLAFDPEGKSRSLFASGIRNCVGLAIQPATGMPWCSTNERDGLGDDLVPDYVT CCCCCCCEEEECCCCCCCHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCHHHHH RVKEGGFYGWPWYYMGDNPDPRHAGERPDLKGQITVPDVLLQAHSASLGLTFYDADLFPP HHHCCCEECCCEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECCCCCC EYRGDGFAAEHGSWNRSKRTGYKVIRIRLKDGMPTGEYEDFVTGFVVNDREVWGRPVGVT CCCCCCEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHEEEEEEECHHHCCCCEEEE VARDGSLLISEDGNGTIWRVSR EECCCCEEEEECCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7574579 [H]