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The map label for this gene is xylA [H]

Identifier: 146339378

GI number: 146339378

Start: 2515598

End: 2516920

Strand: Direct

Name: xylA [H]

Synonym: BRADO2360

Alternate gene names: 146339378

Gene position: 2515598-2516920 (Clockwise)

Preceding gene: 146339377

Following gene: 146339379

Centisome position: 33.74

GC content: 66.74

Gene sequence:

>1323_bases
GTGAACGTCCAGGCTCCCTTCTTCCACACCGGCGCGACCGTCGCTTATGGCGGCCAGGAGTCGCGCAGCCCGCTGTCGTT
CCGCTGGTACGACAAGGATCGCGTCATCCGCGGCAAGCGCATGGAGGACCATCTGCGCTTCGCCGTCTGCTACTGGCATT
CGTTCTGCTGGCCGGGCAGCGATCCGTTCGGCGGCGAAACCTTCCTGCGGCCGTGGCAGCATGGCAACGACGCGCTCGCG
ATGGCGCGCGCCAAGGCCGATGTCGCGTTCGAGCTGTTCCGCCTGCTCGACGTGCCGTTCTTCACCTTCCACGACGTCGA
TGCCGCGCCGGAAGGCGCAACGCTGAAGGAGTCGGTGGCCAACCTCAACGCCATCGCCGACCTGTTCGAGCAGAAGATGG
ACTCCGCCAAGGTGCGGCTGCTGTGGGGCACCGCGAATCTGTTCTCGCACCGCCGCTACATGGCGGGCGCGGCGACCAAC
CCCGATCCCGACGTCTTCACCTATGCCGCCGGCCAGGTGCGCGCCGCGCTCGAGGTGACGCATCGGCTCGGCGGCGCCAA
CTACGTGCTGTGGGGCGGCCGCGAGGGCTACGAGACCCTGCTCAACACCGACATGAAGCGCGAGCTCGACCAGCTCGGCC
GCTTCGTCGCGATGGTGGTCGAGCACAAGCACAAGATCGGCTTCAAGGGCCCGCTGCTGATCGAGCCGAAGCCGAAGGAG
CCGACCAAGCATCAGTATGATTTCGACGTCGCGACCTGCTATGGCTTCCTGAAACGCTACGACCTGCTCGCCGACGTCAA
GCTCAACATCGAGCAGAACCATGCCATCCTGGCCGGCCACTCGTTCCAGCACGAGATCGCGCTGGCGCAGGCGCTCGGCG
TGTTCGGCTCTGTTGACATCAACCGCGGCGACGATCTGCTGGGCTGGGACACCGACCAGTTCGCGATGAATGTGCCGGAG
CTGGCGCTGGTGTTCCACGACATCCTGAGAGGCGGCGGCTTCACCACGGGCGGGCTGAACTTCGACGCCAAGATCCGCCG
GCAGTCGATCGATCCGGACGATCTGCTGCACGCCCATGTCGGCTCGATGGATGCGTGCGCGCGGGCGCTGATCGCGGCCG
ACGAGATGCTCACCGACAGCGCGCTGACGGCGCCGCTCGCGCAGCGCTATGCCGGCTGGGACGGCGAGGAGGGACAGTCG
ATCCTCGCCGGGCGCCGCTCGCTCGCCGAACTCGCCGATCGCGCCGTCAACACCAGCCTCGATCCGCAGCCGCGCTCCGG
CCGGCAGGAATATCTTGAAAGCGTGGTGAACCGCTATGTCTGA

Upstream 100 bases:

>100_bases
GCTGCAGAGTTTCGAACCGCGCGCCGCGCAGCGCACCGCTTACGACGATGCCTATGCGCGCTGGCGCAAGCTCTATCCTG
CTCTCAAGGAGTAACCGCTC

Downstream 100 bases:

>100_bases
CGACAGCAGCCTGCATCAACCGACGGGCGCGGCTGGTGCCGCCGCAATGGCCGCGACCTCACCGGTCCTTGAGCTCAAGG
GCATCGGAAAGCAGTTCGGC

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MNVQAPFFHTGATVAYGGQESRSPLSFRWYDKDRVIRGKRMEDHLRFAVCYWHSFCWPGSDPFGGETFLRPWQHGNDALA
MARAKADVAFELFRLLDVPFFTFHDVDAAPEGATLKESVANLNAIADLFEQKMDSAKVRLLWGTANLFSHRRYMAGAATN
PDPDVFTYAAGQVRAALEVTHRLGGANYVLWGGREGYETLLNTDMKRELDQLGRFVAMVVEHKHKIGFKGPLLIEPKPKE
PTKHQYDFDVATCYGFLKRYDLLADVKLNIEQNHAILAGHSFQHEIALAQALGVFGSVDINRGDDLLGWDTDQFAMNVPE
LALVFHDILRGGGFTTGGLNFDAKIRRQSIDPDDLLHAHVGSMDACARALIAADEMLTDSALTAPLAQRYAGWDGEEGQS
ILAGRRSLAELADRAVNTSLDPQPRSGRQEYLESVVNRYV

Sequences:

>Translated_440_residues
MNVQAPFFHTGATVAYGGQESRSPLSFRWYDKDRVIRGKRMEDHLRFAVCYWHSFCWPGSDPFGGETFLRPWQHGNDALA
MARAKADVAFELFRLLDVPFFTFHDVDAAPEGATLKESVANLNAIADLFEQKMDSAKVRLLWGTANLFSHRRYMAGAATN
PDPDVFTYAAGQVRAALEVTHRLGGANYVLWGGREGYETLLNTDMKRELDQLGRFVAMVVEHKHKIGFKGPLLIEPKPKE
PTKHQYDFDVATCYGFLKRYDLLADVKLNIEQNHAILAGHSFQHEIALAQALGVFGSVDINRGDDLLGWDTDQFAMNVPE
LALVFHDILRGGGFTTGGLNFDAKIRRQSIDPDDLLHAHVGSMDACARALIAADEMLTDSALTAPLAQRYAGWDGEEGQS
ILAGRRSLAELADRAVNTSLDPQPRSGRQEYLESVVNRYV
>Mature_440_residues
MNVQAPFFHTGATVAYGGQESRSPLSFRWYDKDRVIRGKRMEDHLRFAVCYWHSFCWPGSDPFGGETFLRPWQHGNDALA
MARAKADVAFELFRLLDVPFFTFHDVDAAPEGATLKESVANLNAIADLFEQKMDSAKVRLLWGTANLFSHRRYMAGAATN
PDPDVFTYAAGQVRAALEVTHRLGGANYVLWGGREGYETLLNTDMKRELDQLGRFVAMVVEHKHKIGFKGPLLIEPKPKE
PTKHQYDFDVATCYGFLKRYDLLADVKLNIEQNHAILAGHSFQHEIALAQALGVFGSVDINRGDDLLGWDTDQFAMNVPE
LALVFHDILRGGGFTTGGLNFDAKIRRQSIDPDDLLHAHVGSMDACARALIAADEMLTDSALTAPLAQRYAGWDGEEGQS
ILAGRRSLAELADRAVNTSLDPQPRSGRQEYLESVVNRYV

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=427, Percent_Identity=62.5292740046838, Blast_Score=561, Evalue=1e-161,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49049; Mature: 49049

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS00172 XYLOSE_ISOMERASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVQAPFFHTGATVAYGGQESRSPLSFRWYDKDRVIRGKRMEDHLRFAVCYWHSFCWPGS
CCCCCCEEECCCEEEECCCCCCCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHHCCCCC
DPFGGETFLRPWQHGNDALAMARAKADVAFELFRLLDVPFFTFHDVDAAPEGATLKESVA
CCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
NLNAIADLFEQKMDSAKVRLLWGTANLFSHRRYMAGAATNPDPDVFTYAAGQVRAALEVT
HHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHH
HRLGGANYVLWGGREGYETLLNTDMKRELDQLGRFVAMVVEHKHKIGFKGPLLIEPKPKE
HHCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
PTKHQYDFDVATCYGFLKRYDLLADVKLNIEQNHAILAGHSFQHEIALAQALGVFGSVDI
CCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHCCEEC
NRGDDLLGWDTDQFAMNVPELALVFHDILRGGGFTTGGLNFDAKIRRQSIDPDDLLHAHV
CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHC
GSMDACARALIAADEMLTDSALTAPLAQRYAGWDGEEGQSILAGRRSLAELADRAVNTSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DPQPRSGRQEYLESVVNRYV
CCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNVQAPFFHTGATVAYGGQESRSPLSFRWYDKDRVIRGKRMEDHLRFAVCYWHSFCWPGS
CCCCCCEEECCCEEEECCCCCCCCCEEEEECCCHHCCCCCHHHHHHHHHHHHHHHCCCCC
DPFGGETFLRPWQHGNDALAMARAKADVAFELFRLLDVPFFTFHDVDAAPEGATLKESVA
CCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
NLNAIADLFEQKMDSAKVRLLWGTANLFSHRRYMAGAATNPDPDVFTYAAGQVRAALEVT
HHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHH
HRLGGANYVLWGGREGYETLLNTDMKRELDQLGRFVAMVVEHKHKIGFKGPLLIEPKPKE
HHCCCCCEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
PTKHQYDFDVATCYGFLKRYDLLADVKLNIEQNHAILAGHSFQHEIALAQALGVFGSVDI
CCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCEEEECCCCHHHHHHHHHHHHHCCEEC
NRGDDLLGWDTDQFAMNVPELALVFHDILRGGGFTTGGLNFDAKIRRQSIDPDDLLHAHV
CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCHHHHHHHHC
GSMDACARALIAADEMLTDSALTAPLAQRYAGWDGEEGQSILAGRRSLAELADRAVNTSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DPQPRSGRQEYLESVVNRYV
CCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]