Click here to switch to the map view.

The map label for this gene is cbaB [H]

Identifier: 146339283

GI number: 146339283

Start: 2408392

End: 2408955

Strand: Direct

Name: cbaB [H]

Synonym: BRADO2259

Alternate gene names: 146339283

Gene position: 2408392-2408955 (Clockwise)

Preceding gene: 146339282

Following gene: 146339284

Centisome position: 32.3

GC content: 66.49

Gene sequence:

>564_bases
ATGAGCATCGAGCAAAGCCGCGACGCCGCCGCGGTGGCCGCGCGGACCGAGCGCAACTGGGCGATGATCGCGATCGTCAT
CATCGTCGTGATGACGGGGCTCGCCGCCGGCGCCGGCCTGCATCGGGCGACCATGCCGCAGTCCCAGGTCCAGACCGTCG
ATCCCTCGCGCCTGCATCTCTCCGGCGAGTTCATCGAATCCAATCTCGGCACGGAGCTCGGCGCCGATGGCGCGGTGACC
GTGCGCGCGATCGGCCAGCAATATTCCTTCACGCCGGCCTGCATCCTGGTGCCCACGGACACGCCGATCACCTTGCGCGC
CACCAGCGCCGACGTCGTGCACGGCATCCTGGTCCAGGGCACCAACATCAACACCATGCTCGTGCCCGGTTACATCTCGG
AGCAGCCCATGCGCTTCAGCAGGACCGGCGACTATTTGATGCCGTGCCAGGAGTTCTGCAGCTTCGGCCATGAGGGTATG
TGGGGCAAGGTGAGGGTGATCGACAAGGCCGCGTTCGCCGAGCGTGCGAAGGGCGGTGGGAGGCTCAGCTGTGTTGGCGA
ATAG

Upstream 100 bases:

>100_bases
CGCACGGCGCGCTGACCATCGCGGGCATCGCCACCGCGATCGTGATCGGCCTGTGGCTGGCCTTCTACCTGTTCGTTTTC
CTGCCCCGGGGAGCGCTGCA

Downstream 100 bases:

>100_bases
GAAGCTCGTTCTCGCGCATTTCTGGCTCGCGTTCGGGGTGTTCTCGTTGGCGCTGCTGCTCGGCGCCTGGCAGATGTTCA
TCCGCAGCCCGTTGCATACC

Product: putative cytochrome c oxidase subunit II

Products: NA

Alternate protein names: Cytochrome c ba(3) subunit II; Cytochrome c oxidase polypeptide II; Cytochrome cba3 subunit 2 [H]

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSIEQSRDAAAVAARTERNWAMIAIVIIVVMTGLAAGAGLHRATMPQSQVQTVDPSRLHLSGEFIESNLGTELGADGAVT
VRAIGQQYSFTPACILVPTDTPITLRATSADVVHGILVQGTNINTMLVPGYISEQPMRFSRTGDYLMPCQEFCSFGHEGM
WGKVRVIDKAAFAERAKGGGRLSCVGE

Sequences:

>Translated_187_residues
MSIEQSRDAAAVAARTERNWAMIAIVIIVVMTGLAAGAGLHRATMPQSQVQTVDPSRLHLSGEFIESNLGTELGADGAVT
VRAIGQQYSFTPACILVPTDTPITLRATSADVVHGILVQGTNINTMLVPGYISEQPMRFSRTGDYLMPCQEFCSFGHEGM
WGKVRVIDKAAFAERAKGGGRLSCVGE
>Mature_186_residues
SIEQSRDAAAVAARTERNWAMIAIVIIVVMTGLAAGAGLHRATMPQSQVQTVDPSRLHLSGEFIESNLGTELGADGAVTV
RAIGQQYSFTPACILVPTDTPITLRATSADVVHGILVQGTNINTMLVPGYISEQPMRFSRTGDYLMPCQEFCSFGHEGMW
GKVRVIDKAAFAERAKGGGRLSCVGE

Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR015209 [H]

Pfam domain/function: PF00116 COX2; PF09125 COX2-transmemb [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 19968; Mature: 19837

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00078 COX2 ; PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEQSRDAAAVAARTERNWAMIAIVIIVVMTGLAAGAGLHRATMPQSQVQTVDPSRLHL
CCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEE
SGEFIESNLGTELGADGAVTVRAIGQQYSFTPACILVPTDTPITLRATSADVVHGILVQG
EHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCHHHHEEEEEEC
TNINTMLVPGYISEQPMRFSRTGDYLMPCQEFCSFGHEGMWGKVRVIDKAAFAERAKGGG
CCCCEEEECCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCCCEEEEEEHHHHHHHCCCCC
RLSCVGE
EEEEECC
>Mature Secondary Structure 
SIEQSRDAAAVAARTERNWAMIAIVIIVVMTGLAAGAGLHRATMPQSQVQTVDPSRLHL
CCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEE
SGEFIESNLGTELGADGAVTVRAIGQQYSFTPACILVPTDTPITLRATSADVVHGILVQG
EHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCHHHHEEEEEEC
TNINTMLVPGYISEQPMRFSRTGDYLMPCQEFCSFGHEGMWGKVRVIDKAAFAERAKGGG
CCCCEEEECCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCCCEEEEEEHHHHHHHCCCCC
RLSCVGE
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7657607; 10775261 [H]