Click here to switch to the map view.

The map label for this gene is cc4 [H]

Identifier: 146339280

GI number: 146339280

Start: 2406120

End: 2406941

Strand: Direct

Name: cc4 [H]

Synonym: BRADO2256

Alternate gene names: 146339280

Gene position: 2406120-2406941 (Clockwise)

Preceding gene: 146339279

Following gene: 146339281

Centisome position: 32.27

GC content: 66.18

Gene sequence:

>822_bases
TTGTCTCCGTTCGCAAGGCCCCGCATAGAGCTCGATCACATGTCCGAAGAGAAGCCTCAGATATTAGCTGTCCAGGGCGT
GGAAAAGAGGACGCTGTCCTCAACAGCGCTGCTGGCGCTGACCTTGCTGACAGCCGGCCTGTTGTTTGTGCTGGTGCGGC
AAGTGTCGCCGGTTCTGGCGCAGACGGCACCCCATCAGCCGCCTGACACGATGGCGGCGCGCGTCGAGGCCTGCACGCCG
TGCCACGGCAACAAGGGCGAGGGCACCAGCGATATCTACTTCCCGCGGCTCGCCGGCAAGCCGTCCGGCTATCTCTACAA
TCAGCTGCTCGCGTTCCGCACCGGCCGGCGCAAATATCCGCCGATGAATTATCTGCTCGAGTTCCTGCCGAACGACTATC
TGCAGGACATGGCGGACTATTTCGCCGGCCAGCGTCCGCCGCTGCCGCAGCCGGCCGCGACGGCGGTGAGTGATGAGATC
CTGCGCCGCGGCGAGGTGCTGGTGACCGGCGGGGATGCAGCCTCACAGATCCCGGCCTGCGCCAGCTGTCACGGTCTGCA
ACTGACCGGCATGGAGCCGGGGATTCCCGGGCTGCTCGGCTTACGGCCCAATTATGTCAGCGCCCAGCTCGGCGCTTGGC
GCTACGGCACCCGCACGGCGAAGTCGCCGGATTGCATGCAGCGGGTCGCGGCAAAACTGACCGAGGCCGATGTGACCGCG
GTCGCGGCCTATCTCGCCACCCTGCCGGCATCGGAGAACGCGGCGCCGCTGCCGAAGGGCATCTACGTCCTACCGTTCGC
CTGCGGCAGCGCGCCGAATTGA

Upstream 100 bases:

>100_bases
ACGCTCGGTCGCGCAAGATCAGTCAAATCACAGCCGGGGCATGCAAGATGCGCGGAGCAACCCCTGCTTTATTATCAGTC
TGCGATAGCGCTGCGAAAAA

Downstream 100 bases:

>100_bases
GGAGCAGGACCATGCGACCGATGCTCCGTTGTCTCTCGCTCATCATCGCGCTGCCGTTCACGGCGCCGGCTGTGCATGCG
CAGTCCAGCGCGCCGAACGC

Product: putative cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSPFARPRIELDHMSEEKPQILAVQGVEKRTLSSTALLALTLLTAGLLFVLVRQVSPVLAQTAPHQPPDTMAARVEACTP
CHGNKGEGTSDIYFPRLAGKPSGYLYNQLLAFRTGRRKYPPMNYLLEFLPNDYLQDMADYFAGQRPPLPQPAATAVSDEI
LRRGEVLVTGGDAASQIPACASCHGLQLTGMEPGIPGLLGLRPNYVSAQLGAWRYGTRTAKSPDCMQRVAAKLTEADVTA
VAAYLATLPASENAAPLPKGIYVLPFACGSAPN

Sequences:

>Translated_273_residues
MSPFARPRIELDHMSEEKPQILAVQGVEKRTLSSTALLALTLLTAGLLFVLVRQVSPVLAQTAPHQPPDTMAARVEACTP
CHGNKGEGTSDIYFPRLAGKPSGYLYNQLLAFRTGRRKYPPMNYLLEFLPNDYLQDMADYFAGQRPPLPQPAATAVSDEI
LRRGEVLVTGGDAASQIPACASCHGLQLTGMEPGIPGLLGLRPNYVSAQLGAWRYGTRTAKSPDCMQRVAAKLTEADVTA
VAAYLATLPASENAAPLPKGIYVLPFACGSAPN
>Mature_272_residues
SPFARPRIELDHMSEEKPQILAVQGVEKRTLSSTALLALTLLTAGLLFVLVRQVSPVLAQTAPHQPPDTMAARVEACTPC
HGNKGEGTSDIYFPRLAGKPSGYLYNQLLAFRTGRRKYPPMNYLLEFLPNDYLQDMADYFAGQRPPLPQPAATAVSDEIL
RRGEVLVTGGDAASQIPACASCHGLQLTGMEPGIPGLLGLRPNYVSAQLGAWRYGTRTAKSPDCMQRVAAKLTEADVTAV
AAYLATLPASENAAPLPKGIYVLPFACGSAPN

Specific function: Diheme, high potential cytochrome c believed to be an intermediate electron donor to terminal oxidation systems [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 29248; Mature: 29117

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS51007 CYTC L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPFARPRIELDHMSEEKPQILAVQGVEKRTLSSTALLALTLLTAGLLFVLVRQVSPVLA
CCCCCCCCEEHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTAPHQPPDTMAARVEACTPCHGNKGEGTSDIYFPRLAGKPSGYLYNQLLAFRTGRRKYP
HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCC
PMNYLLEFLPNDYLQDMADYFAGQRPPLPQPAATAVSDEILRRGEVLVTGGDAASQIPAC
CHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCH
ASCHGLQLTGMEPGIPGLLGLRPNYVSAQLGAWRYGTRTAKSPDCMQRVAAKLTEADVTA
HCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHH
VAAYLATLPASENAAPLPKGIYVLPFACGSAPN
HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
SPFARPRIELDHMSEEKPQILAVQGVEKRTLSSTALLALTLLTAGLLFVLVRQVSPVLA
CCCCCCCEEHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTAPHQPPDTMAARVEACTPCHGNKGEGTSDIYFPRLAGKPSGYLYNQLLAFRTGRRKYP
HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCC
PMNYLLEFLPNDYLQDMADYFAGQRPPLPQPAATAVSDEILRRGEVLVTGGDAASQIPAC
CHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCH
ASCHGLQLTGMEPGIPGLLGLRPNYVSAQLGAWRYGTRTAKSPDCMQRVAAKLTEADVTA
HCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHHHHHHH
VAAYLATLPASENAAPLPKGIYVLPFACGSAPN
HHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]