| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146339081
Identifier: 146339081
GI number: 146339081
Start: 2166542
End: 2168032
Strand: Direct
Name: 146339081
Synonym: BRADO2035
Alternate gene names: NA
Gene position: 2166542-2168032 (Clockwise)
Preceding gene: 146339080
Following gene: 146339083
Centisome position: 29.06
GC content: 67.07
Gene sequence:
>1491_bases TTGAGCGTATCGATGTTAGTTCTGCGTCCAGGTCCGAAGGGCGCGCGTATTGCGTCCTTCGGCCTCGGTCTCTGCGTCTT CGCTCTGATGCCGACAGAGACCGGGTATCAAGACATCGCTTCACGGCTCGCCCGCCAGCCGGGCGTCGCCGAACGTTGGC AGAAGCGCGTGTTCTCGGCTGCGGCCTCAGTTCAGGTCGCCACCTATAGTTTCGGACTTCCGATCGGCACCTCGGCGCCG CAGGGCATTCGCCTCGCGAGCCTGAGCGAGCGCGACCTCGACATCACCGGCAGCACGACGCCGCGCAATCCCGCGCTGCA GGTTCCGCCGCGCTATCGCCCTTCCGATTTTCCGACCGTCGATCGCACCTTGAAGGGTGATCGCCTCGTGGTCCGTCCCG CCGCGCCACCAGAGCCTCCGACGGAAGCGGCCGAGCCGGTCGACACCGCGCCGAGCGCGCCCGCTCCCGCCGCCCCCGCC CAGCCCGATTCGAACTCGTCGGTGTTCGGCGCCAAGACCAGCGAAGCGCCCGCGACCATTCTGGTGCCGCCGCGCGCGGC GCTCGATCCCGAATTGCAGGAGGCGCTGAGCGCGCCGCCGCTGGCGCAGTACGATTCCACGAAGCCCGAGATCCGTCCCT CCGGCGAGCTCAAGCCCGCGAGCGAGCCGCCGGCCCCCGATGGCGGCGCGGCGCTCGATGGTTTGAACATCAAGACAGCG AATCTCTATTTCGGCGCCACGTCGCTTGGCGGCGTCGCCGGAACCATGGAGACTTGGCAACCCGGCGAAGCGCCGCTAAT CGTGATGCCGGATCCGGACCTCAAGCCGATGACCGTCCTTCTGCCGCCTGCGGAAGATGTGGCGAAGGCCGGTGACGGCG GCGAGAGCATCGCGCCGAAAGGCGAGGTCAATGCCGATAATCAGCGCGTCCGCACGCCGGCCGAGCGTCTCGGGCTGACC GACGAGAAGTCACGCTCCAAGTCCGAGAAGTGCCTCGCGGAGGCGATCTATTTCGAGGCCCGTGGCGAGGCCGTGCGCGG CCAGATGGCGGTGGCGCAGGTGGTGTTGAACCGCGCGTTCTCCGGCTACTACCCGACCACGGTGTGCGGCGTCGTCTACC AGAATAAATATCGCCACTTCGCCTGCCAGTTCACCTTTGCCTGCGACAACAATGCCGACGTGATCCGCGAGCCCGACATG TGGGACCGCGCCAAGAAGATTGCCAAGGCGATGCTCGACGGACTGGTCTGGCTGCCCGAGGTCGGCAAGTCGACGCATTA TCACGCCTATTGGGTGCGGCCGTCCTGGGTCGCCGAGATGAAGCGGACGTACAAGTTCGGCGTTCACACCTTCTACCGGC CCAAGCGCTGGGGCGACGGCAGCGAGGCGCCGAGCTGGGGCACGCCGCAGCAGACCGCGGCCATTTCAGCCGAGCTCGCC GAGGCCGCCAAGAGCGAAGCCGAGATCAATCCGAACTGGACGCGACGCTAG
Upstream 100 bases:
>100_bases CGCGGGTTAACTCCTCGGCAACCTAAACCCGATACGAACATGACAGATCGAATTGCACGGAAGCACTGTCGTTCGGTCGC GTGAGTAGCGTAGCGTTGCG
Downstream 100 bases:
>100_bases GCCACCGTCATTCCGGGGCAATCGTTCACGCGCCGTGGCGCGTGAGCGATTGAACCCAGAATGCCGAGCTGGCTGGCGAT GCGCGCAAAACAAGCGCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: Cell Wall Hydrolase Family; SleB-Like Protein; Hydrolase; Cell Wall Hydrolase; Spore Cortex-Lytic; Cell Wall Hydrolase Domain Protein; Spore-Cortex-Lytic Prepeptide; Cell Wall Hydrolase Sleb; N-Acetylmuramoyl-L-Alanine Amidase; Cell Wall Hydrolase Domain-Containing Protein; Cell Wall Hydrolase Family Protein
Number of amino acids: Translated: 496; Mature: 495
Protein sequence:
>496_residues MSVSMLVLRPGPKGARIASFGLGLCVFALMPTETGYQDIASRLARQPGVAERWQKRVFSAAASVQVATYSFGLPIGTSAP QGIRLASLSERDLDITGSTTPRNPALQVPPRYRPSDFPTVDRTLKGDRLVVRPAAPPEPPTEAAEPVDTAPSAPAPAAPA QPDSNSSVFGAKTSEAPATILVPPRAALDPELQEALSAPPLAQYDSTKPEIRPSGELKPASEPPAPDGGAALDGLNIKTA NLYFGATSLGGVAGTMETWQPGEAPLIVMPDPDLKPMTVLLPPAEDVAKAGDGGESIAPKGEVNADNQRVRTPAERLGLT DEKSRSKSEKCLAEAIYFEARGEAVRGQMAVAQVVLNRAFSGYYPTTVCGVVYQNKYRHFACQFTFACDNNADVIREPDM WDRAKKIAKAMLDGLVWLPEVGKSTHYHAYWVRPSWVAEMKRTYKFGVHTFYRPKRWGDGSEAPSWGTPQQTAAISAELA EAAKSEAEINPNWTRR
Sequences:
>Translated_496_residues MSVSMLVLRPGPKGARIASFGLGLCVFALMPTETGYQDIASRLARQPGVAERWQKRVFSAAASVQVATYSFGLPIGTSAP QGIRLASLSERDLDITGSTTPRNPALQVPPRYRPSDFPTVDRTLKGDRLVVRPAAPPEPPTEAAEPVDTAPSAPAPAAPA QPDSNSSVFGAKTSEAPATILVPPRAALDPELQEALSAPPLAQYDSTKPEIRPSGELKPASEPPAPDGGAALDGLNIKTA NLYFGATSLGGVAGTMETWQPGEAPLIVMPDPDLKPMTVLLPPAEDVAKAGDGGESIAPKGEVNADNQRVRTPAERLGLT DEKSRSKSEKCLAEAIYFEARGEAVRGQMAVAQVVLNRAFSGYYPTTVCGVVYQNKYRHFACQFTFACDNNADVIREPDM WDRAKKIAKAMLDGLVWLPEVGKSTHYHAYWVRPSWVAEMKRTYKFGVHTFYRPKRWGDGSEAPSWGTPQQTAAISAELA EAAKSEAEINPNWTRR >Mature_495_residues SVSMLVLRPGPKGARIASFGLGLCVFALMPTETGYQDIASRLARQPGVAERWQKRVFSAAASVQVATYSFGLPIGTSAPQ GIRLASLSERDLDITGSTTPRNPALQVPPRYRPSDFPTVDRTLKGDRLVVRPAAPPEPPTEAAEPVDTAPSAPAPAAPAQ PDSNSSVFGAKTSEAPATILVPPRAALDPELQEALSAPPLAQYDSTKPEIRPSGELKPASEPPAPDGGAALDGLNIKTAN LYFGATSLGGVAGTMETWQPGEAPLIVMPDPDLKPMTVLLPPAEDVAKAGDGGESIAPKGEVNADNQRVRTPAERLGLTD EKSRSKSEKCLAEAIYFEARGEAVRGQMAVAQVVLNRAFSGYYPTTVCGVVYQNKYRHFACQFTFACDNNADVIREPDMW DRAKKIAKAMLDGLVWLPEVGKSTHYHAYWVRPSWVAEMKRTYKFGVHTFYRPKRWGDGSEAPSWGTPQQTAAISAELAE AAKSEAEINPNWTRR
Specific function: Unknown
COG id: COG3773
COG function: function code M; Cell wall hydrolyses involved in spore germination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53319; Mature: 53188
Theoretical pI: Translated: 6.92; Mature: 6.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSMLVLRPGPKGARIASFGLGLCVFALMPTETGYQDIASRLARQPGVAERWQKRVFSA CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH AASVQVATYSFGLPIGTSAPQGIRLASLSERDLDITGSTTPRNPALQVPPRYRPSDFPTV HHHEEEEEEEECCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCH DRTLKGDRLVVRPAAPPEPPTEAAEPVDTAPSAPAPAAPAQPDSNSSVFGAKTSEAPATI HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEE LVPPRAALDPELQEALSAPPLAQYDSTKPEIRPSGELKPASEPPAPDGGAALDGLNIKTA EECCCHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEE NLYFGATSLGGVAGTMETWQPGEAPLIVMPDPDLKPMTVLLPPAEDVAKAGDGGESIAPK EEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCHHHHHHCCCCCCCCCCC GEVNADNQRVRTPAERLGLTDEKSRSKSEKCLAEAIYFEARGEAVRGQMAVAQVVLNRAF CCCCCCCCHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH SGYYPTTVCGVVYQNKYRHFACQFTFACDNNADVIREPDMWDRAKKIAKAMLDGLVWLPE CCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHEEECCC VGKSTHYHAYWVRPSWVAEMKRTYKFGVHTFYRPKRWGDGSEAPSWGTPQQTAAISAELA CCCCCCEEEEEECHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHH EAAKSEAEINPNWTRR HHHHHCCCCCCCCCCC >Mature Secondary Structure SVSMLVLRPGPKGARIASFGLGLCVFALMPTETGYQDIASRLARQPGVAERWQKRVFSA CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH AASVQVATYSFGLPIGTSAPQGIRLASLSERDLDITGSTTPRNPALQVPPRYRPSDFPTV HHHEEEEEEEECCCCCCCCCCCEEEECCCCCCCEECCCCCCCCCCEECCCCCCCCCCCCH DRTLKGDRLVVRPAAPPEPPTEAAEPVDTAPSAPAPAAPAQPDSNSSVFGAKTSEAPATI HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEE LVPPRAALDPELQEALSAPPLAQYDSTKPEIRPSGELKPASEPPAPDGGAALDGLNIKTA EECCCHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEE NLYFGATSLGGVAGTMETWQPGEAPLIVMPDPDLKPMTVLLPPAEDVAKAGDGGESIAPK EEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCHHHHHHCCCCCCCCCCC GEVNADNQRVRTPAERLGLTDEKSRSKSEKCLAEAIYFEARGEAVRGQMAVAQVVLNRAF CCCCCCCCHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH SGYYPTTVCGVVYQNKYRHFACQFTFACDNNADVIREPDMWDRAKKIAKAMLDGLVWLPE CCCCCHHHHHHHHHCCCEEEEEEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHEEECCC VGKSTHYHAYWVRPSWVAEMKRTYKFGVHTFYRPKRWGDGSEAPSWGTPQQTAAISAELA CCCCCCEEEEEECHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHH EAAKSEAEINPNWTRR HHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA