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The map label for this gene is rnhB [H]

Identifier: 146339063

GI number: 146339063

Start: 2145764

End: 2146633

Strand: Direct

Name: rnhB [H]

Synonym: BRADO2017

Alternate gene names: 146339063

Gene position: 2145764-2146633 (Clockwise)

Preceding gene: 146339062

Following gene: 146339064

Centisome position: 28.78

GC content: 68.05

Gene sequence:

>870_bases
TTGCGTCGGCGGCGACCGATCCGCAGGATGCCCGTCATGATTCGGAATCAGGCCAACAAGCCGGGCAGGGCGAAAGCGGC
CACTGCCGCAAGGAAGAGCCCTCTGACGAAAAGTGCGGCCAAGCCGGCCGCGGCGAGCGGGGCTGGCGCCAAGCTCGGCA
AGGGCGTCATTGCGGTGGCGCTGCCGAGCTTTCGGCGCGAGCGGGCGCTGCTCAAGCAGGGCATCTGGCCGGTCGCCGGC
TGCGATGAGGCAGGCCGCGGTCCGCTCGCAGGCCCTGTGGTGGCGGCCGCCGTCATTCTCGATCCCAACCGCATCCCGAA
AGGCCTCGACGATTCGAAGCGCCTGAGCGCCGAGCAGCGCGAGGCGCTGTTCGACAAGATCTGTAAGACTTCGGCGTTCG
CTGTCGCGTACGCCTCGCCGACGCGAATCGATCGCGACAACATTCTGCGGGCGTCGCTGTGGGCGCTGTCGCGGGCGGTG
AGAGCCCTGCCTGAGGCGCCGAAGCATGTGTTCGTGGACGGCCGCGACCGCATCGACGTCGACTGCAACTGTGAGGCCGT
GATCGGCGGCGATGGGCTGGTGATGTCGATCGCCGCGGCCTCGATCGTCGCCAAGGTGACGCGCGATCGCCTGATGTGCG
CGCTGGCGCAGGATTGTCCTGGTTACGGCTTCGAGCAGCACAAGGGCTATGCGGTGCCCGAGCATCTCGCCGCGCTCGAT
CGTCTGGGTCCATCGGTCCATCACCGCAGCCTGTTCGCGCCGGTGGTCGCGGCCCGTCGCAAGCATCAGCCCTGGACCGA
CGTGCCCGAGCCCGACCTGTTCGCAGAGGTGACCGTGGTGACCTCGACGGAAATCTCGCTGGAAGCCTGA

Upstream 100 bases:

>100_bases
GAGGGGCAAGCCGTCGAGCCGCCTGCCTCTACCAATCCCGCCGGGTCAAGGAGTATGGCCGGCGGGCCTTGAATAGCGGG
GAATTGAGCGGGATCCCAGG

Downstream 100 bases:

>100_bases
TGCTGGTTGCCTCGACCGCGCCGCGGTCTTAAAGCTTGAGAGAGCCAACCAGCACGAATTGTCACTCCTCGCAGCGGGGG
CGGTCCTGTGCGCCTCGTGC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MRRRRPIRRMPVMIRNQANKPGRAKAATAARKSPLTKSAAKPAAASGAGAKLGKGVIAVALPSFRRERALLKQGIWPVAG
CDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQREALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAV
RALPEAPKHVFVDGRDRIDVDCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD
RLGPSVHHRSLFAPVVAARRKHQPWTDVPEPDLFAEVTVVTSTEISLEA

Sequences:

>Translated_289_residues
MRRRRPIRRMPVMIRNQANKPGRAKAATAARKSPLTKSAAKPAAASGAGAKLGKGVIAVALPSFRRERALLKQGIWPVAG
CDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQREALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAV
RALPEAPKHVFVDGRDRIDVDCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD
RLGPSVHHRSLFAPVVAARRKHQPWTDVPEPDLFAEVTVVTSTEISLEA
>Mature_289_residues
MRRRRPIRRMPVMIRNQANKPGRAKAATAARKSPLTKSAAKPAAASGAGAKLGKGVIAVALPSFRRERALLKQGIWPVAG
CDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQREALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAV
RALPEAPKHVFVDGRDRIDVDCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD
RLGPSVHHRSLFAPVVAARRKHQPWTDVPEPDLFAEVTVVTSTEISLEA

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=179, Percent_Identity=49.7206703910614, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 31024; Mature: 31024

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRRPIRRMPVMIRNQANKPGRAKAATAARKSPLTKSAAKPAAASGAGAKLGKGVIAVA
CCCCCCHHHCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCHHHCCCEEEEE
LPSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQR
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCHHHHHHHHHH
EALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDRIDV
HHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEE
DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHH
RLGPSVHHRSLFAPVVAARRKHQPWTDVPEPDLFAEVTVVTSTEISLEA
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEECC
>Mature Secondary Structure
MRRRRPIRRMPVMIRNQANKPGRAKAATAARKSPLTKSAAKPAAASGAGAKLGKGVIAVA
CCCCCCHHHCCHHHHCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCHHHCCCEEEEE
LPSFRRERALLKQGIWPVAGCDEAGRGPLAGPVVAAAVILDPNRIPKGLDDSKRLSAEQR
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCCHHHHHHHHHH
EALFDKICKTSAFAVAYASPTRIDRDNILRASLWALSRAVRALPEAPKHVFVDGRDRIDV
HHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEE
DCNCEAVIGGDGLVMSIAAASIVAKVTRDRLMCALAQDCPGYGFEQHKGYAVPEHLAALD
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHH
RLGPSVHHRSLFAPVVAARRKHQPWTDVPEPDLFAEVTVVTSTEISLEA
HHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA