| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is bphB [H]
Identifier: 146339054
GI number: 146339054
Start: 2132793
End: 2135354
Strand: Direct
Name: bphB [H]
Synonym: BRADO2008
Alternate gene names: 146339054
Gene position: 2132793-2135354 (Clockwise)
Preceding gene: 146339053
Following gene: 146339055
Centisome position: 28.6
GC content: 67.33
Gene sequence:
>2562_bases ATGAACGAGCCGGTCAACCTTACCAATTGCGATCGCGAGCCGATCCATGTCCCCGGCAGCGTCCAGCCGTTCGGCTTCCT CCTGGCGCTGGTGTCGGACTTCACGATCTGCATGGCCTCGGAGAACGCGCCGGACTTCCTCGACGGCGACATCGGCTGGC TGTTGCACAAATCGCTCGGCGCGGTGGTCTGCGAGAGTGCCGAGGCGGCGATCCGCGCTCGCGTCGACTATCTAAGCGGG CCGGATGCGGTCGAGCGCGTCTTCGGCGTCGACCTGCAGGGGCAGGGGCGTCTGTTCGATCTCGCCATCCATTTCTCCGG CGCCTATCTCGTCGTCGAAGCCGAGCCCAGCCTCATCGAGCCCGGCGTCAATTCCGGCGAGCTGGTGCGGCTGATGCTCG GCCGCATCCGCAAGACGACCGGCATGATCGACCTGGCGCAGGAGGCGGCGCGGCAGCTCAAGCTGCTGACCGGCTTCGAT CGCGTGATGGTTTATCGATTCCATCCGGACGGCTCCGGCGAGGTCATCGCGGAGACGGCGGGCTCGGGCCTCGAGCCTTT CCTCGGTCTGCACTATCCGGCCTCGGATATTCCGCGGCAGGCGCGGCAGCTCTATCAGCGCAACTGGCTGCGCATCATCG CCGACATCGACGCCGCGCCGGCGCCGCTGCTGTCGACGCCGGCCCACAATGCGCCGCTGCTCGACCTGTCAATGAGCGTG CTGCGCGCGGTGTCGCCTGTTCACATCGAATATCTCCGCAACATGGGCGTCGGCGCCTCCATGTCGGTCTCGATCCTGCG CGATGGCAAGCTGTGGGGCCTGTTCGCCTGCCACCATTATTCGCCGCGTCATCTCTCGTTCGAGAAGCGGACCGCGGCCG AGCTGTTCGGCCAGATGTATTCCTGGCTGCTCGAGGCCCGCGAGCGCGAGACCGACGTCGCCTATGAAAGCCGCGCGCAC CAGATCCAGGAACGGCTGATCGAGCGCGCGGCGACGCAGGCGCACAGCAAACGCGCCATTCTGGAGTTCGTCGGCGAGTA TCGCCAGATGATCGAATGCGACGGCCTTGCGATCTGGTCCGACGACGAGATCACGCTCGATGGCGAGACGCCGACCGAGG AGGAGGTGCAGGAGCTCATCGGCTTCATCAACCGGACGTCGCCGGGCCAGATCTGCGCCAGCGCGGAGATCGCCAAGGTC TACGCGTCCGGCGAGGCGTTCCGCGACCGTGCGGCCGGCTTCCTTGCGATCCCGATCTCGCGCACGCCGCGCGACTGCCT GGTGTTCTTCCGGCGCGAGGTGCTGCGCTCGGTCAACTGGGCCGGCGATCCCAACAAGACCTATGCCGAGGGGCCGCTCG GCGCGCGGCTGACGCCGCGCAAGAGTTTCGAGCTGTGGCAGCAGACGGTGGCCGGTCAGTCCAAGCCGTGGACCACGGCG GATCTGCGCATCGCCGAGAGCCTGCGTGTCACGCTTCTGGAAGTCATCCTGCAATTGTCGGAGCTCGCCGCGCGCGAGCG CCGCGGCGCACAGGAGCGGCAGGAGCTGATGATCGCCGAGCTCAACCATCGCGTCCGCAACATCCTGAGCCTCGTGCGCG GCCTCGTCGCCCAGAGCAAGGATACCGCGACGTCGGTCGAGGAGTTCGCCTCGGTGCTGGGCGGCCGCATTCAGGCGCTG GCGCGGGCGCACGACCAGATCACCAATCTCAACTGGGCACCGGTCGCGCTGCGGTCGCTGCTCGAATCCGAAGCGGGCGC GTATCTCGGCGCGCGCGCCGGGCGTGTCAGGATGGAAGGCCCCGACGTCGCGCTCGATCCCAAGGCGTTCGCGACGCTCG CGCTCGTCGTCCACGAGATGATGACGAATTCGGCGAAGTACGGCGCGCTCGCCGACTCCACGGGCCAGGTGCAGGTGCTG TGGCGGCTCGATCCCGGATCGAGCCTCGTGATCGACTGGAAGGAGAGCGGCGGGCCGCCGGTGCAGCCGCCGTCGCGGCG CGGCTTCGGCACCACGATCATCGAACGCTCGGTGCCGTTCGATCTCAAGGGCGACGCCGAGATCCGCTTCGACCTGCTCG GAGTTCAGGCGCGCTTCGTCATTCCCGCCAATTTCGTGCAGATGGTGCCCGCGCTGTCCGGCGCACCGTCGCGTCAACAG ACCAAGGAAGAGCAGACACCAAGGCTCTCCGGCACGGTGCTGATCGTCGAGGACAATCTGATCATCGCGATGGGGGCCGA GGTGATCCTGCTCGAGCTCGGCGCGCGCCACATCGACACGGCGGCTTCGGTGAATCAGGCGCTGAAGTCGATCGAACGCG CGGTGCCGAGCTTCGCGCTGCTCGACATCAACCTGGGCGCGGAGAGCAGCCTGCCAGTCGGGCATCGCCTCAAGGAGCTC GGCGTGCCCTTCATGTTCGCCACCGGTTATGGCGAGCGCGCGCCGATTCCCGCGGAGCTCTCCGAGGCGCCGGTCATCCA GAAGCCTTACACGCGCGAGCTGGTCGAGAAGGCGCTGTCGAAGATGATGAAGCAGGCCGCGCCGGCGCGCGATCCCGGTT GA
Upstream 100 bases:
>100_bases CGCGGCTCGCACGCGAGCCGATGACGTCGGATGACGAAGGCAAGGCGATCGCCGGCGCGCACGCCGCGTTCGCGCTGTTT GCGACCGCGATGGCTGCAGC
Downstream 100 bases:
>100_bases TGGATCGATCATCATCCGATGCGCCACCGGATGGGTGTGATGGTAGCGGCCGGTGGTCGCGGCCACGTCGCTTGGAACAG CGCGAATCAACCTTGGCGCG
Product: putative bacteriophytochrome
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MNEPVNLTNCDREPIHVPGSVQPFGFLLALVSDFTICMASENAPDFLDGDIGWLLHKSLGAVVCESAEAAIRARVDYLSG PDAVERVFGVDLQGQGRLFDLAIHFSGAYLVVEAEPSLIEPGVNSGELVRLMLGRIRKTTGMIDLAQEAARQLKLLTGFD RVMVYRFHPDGSGEVIAETAGSGLEPFLGLHYPASDIPRQARQLYQRNWLRIIADIDAAPAPLLSTPAHNAPLLDLSMSV LRAVSPVHIEYLRNMGVGASMSVSILRDGKLWGLFACHHYSPRHLSFEKRTAAELFGQMYSWLLEARERETDVAYESRAH QIQERLIERAATQAHSKRAILEFVGEYRQMIECDGLAIWSDDEITLDGETPTEEEVQELIGFINRTSPGQICASAEIAKV YASGEAFRDRAAGFLAIPISRTPRDCLVFFRREVLRSVNWAGDPNKTYAEGPLGARLTPRKSFELWQQTVAGQSKPWTTA DLRIAESLRVTLLEVILQLSELAARERRGAQERQELMIAELNHRVRNILSLVRGLVAQSKDTATSVEEFASVLGGRIQAL ARAHDQITNLNWAPVALRSLLESEAGAYLGARAGRVRMEGPDVALDPKAFATLALVVHEMMTNSAKYGALADSTGQVQVL WRLDPGSSLVIDWKESGGPPVQPPSRRGFGTTIIERSVPFDLKGDAEIRFDLLGVQARFVIPANFVQMVPALSGAPSRQQ TKEEQTPRLSGTVLIVEDNLIIAMGAEVILLELGARHIDTAASVNQALKSIERAVPSFALLDINLGAESSLPVGHRLKEL GVPFMFATGYGERAPIPAELSEAPVIQKPYTRELVEKALSKMMKQAAPARDPG
Sequences:
>Translated_853_residues MNEPVNLTNCDREPIHVPGSVQPFGFLLALVSDFTICMASENAPDFLDGDIGWLLHKSLGAVVCESAEAAIRARVDYLSG PDAVERVFGVDLQGQGRLFDLAIHFSGAYLVVEAEPSLIEPGVNSGELVRLMLGRIRKTTGMIDLAQEAARQLKLLTGFD RVMVYRFHPDGSGEVIAETAGSGLEPFLGLHYPASDIPRQARQLYQRNWLRIIADIDAAPAPLLSTPAHNAPLLDLSMSV LRAVSPVHIEYLRNMGVGASMSVSILRDGKLWGLFACHHYSPRHLSFEKRTAAELFGQMYSWLLEARERETDVAYESRAH QIQERLIERAATQAHSKRAILEFVGEYRQMIECDGLAIWSDDEITLDGETPTEEEVQELIGFINRTSPGQICASAEIAKV YASGEAFRDRAAGFLAIPISRTPRDCLVFFRREVLRSVNWAGDPNKTYAEGPLGARLTPRKSFELWQQTVAGQSKPWTTA DLRIAESLRVTLLEVILQLSELAARERRGAQERQELMIAELNHRVRNILSLVRGLVAQSKDTATSVEEFASVLGGRIQAL ARAHDQITNLNWAPVALRSLLESEAGAYLGARAGRVRMEGPDVALDPKAFATLALVVHEMMTNSAKYGALADSTGQVQVL WRLDPGSSLVIDWKESGGPPVQPPSRRGFGTTIIERSVPFDLKGDAEIRFDLLGVQARFVIPANFVQMVPALSGAPSRQQ TKEEQTPRLSGTVLIVEDNLIIAMGAEVILLELGARHIDTAASVNQALKSIERAVPSFALLDINLGAESSLPVGHRLKEL GVPFMFATGYGERAPIPAELSEAPVIQKPYTRELVEKALSKMMKQAAPARDPG >Mature_853_residues MNEPVNLTNCDREPIHVPGSVQPFGFLLALVSDFTICMASENAPDFLDGDIGWLLHKSLGAVVCESAEAAIRARVDYLSG PDAVERVFGVDLQGQGRLFDLAIHFSGAYLVVEAEPSLIEPGVNSGELVRLMLGRIRKTTGMIDLAQEAARQLKLLTGFD RVMVYRFHPDGSGEVIAETAGSGLEPFLGLHYPASDIPRQARQLYQRNWLRIIADIDAAPAPLLSTPAHNAPLLDLSMSV LRAVSPVHIEYLRNMGVGASMSVSILRDGKLWGLFACHHYSPRHLSFEKRTAAELFGQMYSWLLEARERETDVAYESRAH QIQERLIERAATQAHSKRAILEFVGEYRQMIECDGLAIWSDDEITLDGETPTEEEVQELIGFINRTSPGQICASAEIAKV YASGEAFRDRAAGFLAIPISRTPRDCLVFFRREVLRSVNWAGDPNKTYAEGPLGARLTPRKSFELWQQTVAGQSKPWTTA DLRIAESLRVTLLEVILQLSELAARERRGAQERQELMIAELNHRVRNILSLVRGLVAQSKDTATSVEEFASVLGGRIQAL ARAHDQITNLNWAPVALRSLLESEAGAYLGARAGRVRMEGPDVALDPKAFATLALVVHEMMTNSAKYGALADSTGQVQVL WRLDPGSSLVIDWKESGGPPVQPPSRRGFGTTIIERSVPFDLKGDAEIRFDLLGVQARFVIPANFVQMVPALSGAPSRQQ TKEEQTPRLSGTVLIVEDNLIIAMGAEVILLELGARHIDTAASVNQALKSIERAVPSFALLDINLGAESSLPVGHRLKEL GVPFMFATGYGERAPIPAELSEAPVIQKPYTRELVEKALSKMMKQAAPARDPG
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG4251
COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93555; Mature: 93555
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEPVNLTNCDREPIHVPGSVQPFGFLLALVSDFTICMASENAPDFLDGDIGWLLHKSLG CCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHH AVVCESAEAAIRARVDYLSGPDAVERVFGVDLQGQGRLFDLAIHFSGAYLVVEAEPSLIE HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCCC PGVNSGELVRLMLGRIRKTTGMIDLAQEAARQLKLLTGFDRVMVYRFHPDGSGEVIAETA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEECC GSGLEPFLGLHYPASDIPRQARQLYQRNWLRIIADIDAAPAPLLSTPAHNAPLLDLSMSV CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHH LRAVSPVHIEYLRNMGVGASMSVSILRDGKLWGLFACHHYSPRHLSFEKRTAAELFGQMY HHHCCHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHH SWLLEARERETDVAYESRAHQIQERLIERAATQAHSKRAILEFVGEYRQMIECDGLAIWS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC DDEITLDGETPTEEEVQELIGFINRTSPGQICASAEIAKVYASGEAFRDRAAGFLAIPIS CCCEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCEEEEECC RTPRDCLVFFRREVLRSVNWAGDPNKTYAEGPLGARLTPRKSFELWQQTVAGQSKPWTTA CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHH DLRIAESLRVTLLEVILQLSELAARERRGAQERQELMIAELNHRVRNILSLVRGLVAQSK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DTATSVEEFASVLGGRIQALARAHDQITNLNWAPVALRSLLESEAGAYLGARAGRVRMEG CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCCCCCEEEECC PDVALDPKAFATLALVVHEMMTNSAKYGALADSTGQVQVLWRLDPGSSLVIDWKESGGPP CCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCC VQPPSRRGFGTTIIERSVPFDLKGDAEIRFDLLGVQARFVIPANFVQMVPALSGAPSRQQ CCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHCCCCCHHH TKEEQTPRLSGTVLIVEDNLIIAMGAEVILLELGARHIDTAASVNQALKSIERAVPSFAL HHHHCCCCCCCEEEEEECCEEEEECCCEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCEEE LDINLGAESSLPVGHRLKELGVPFMFATGYGERAPIPAELSEAPVIQKPYTRELVEKALS EEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KMMKQAAPARDPG HHHHHCCCCCCCC >Mature Secondary Structure MNEPVNLTNCDREPIHVPGSVQPFGFLLALVSDFTICMASENAPDFLDGDIGWLLHKSLG CCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHH AVVCESAEAAIRARVDYLSGPDAVERVFGVDLQGQGRLFDLAIHFSGAYLVVEAEPSLIE HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEECCCCCCC PGVNSGELVRLMLGRIRKTTGMIDLAQEAARQLKLLTGFDRVMVYRFHPDGSGEVIAETA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEECC GSGLEPFLGLHYPASDIPRQARQLYQRNWLRIIADIDAAPAPLLSTPAHNAPLLDLSMSV CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHH LRAVSPVHIEYLRNMGVGASMSVSILRDGKLWGLFACHHYSPRHLSFEKRTAAELFGQMY HHHCCHHHHHHHHCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHH SWLLEARERETDVAYESRAHQIQERLIERAATQAHSKRAILEFVGEYRQMIECDGLAIWS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC DDEITLDGETPTEEEVQELIGFINRTSPGQICASAEIAKVYASGEAFRDRAAGFLAIPIS CCCEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCEEEEECC RTPRDCLVFFRREVLRSVNWAGDPNKTYAEGPLGARLTPRKSFELWQQTVAGQSKPWTTA CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHH DLRIAESLRVTLLEVILQLSELAARERRGAQERQELMIAELNHRVRNILSLVRGLVAQSK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DTATSVEEFASVLGGRIQALARAHDQITNLNWAPVALRSLLESEAGAYLGARAGRVRMEG CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHCCCCCEEEECC PDVALDPKAFATLALVVHEMMTNSAKYGALADSTGQVQVLWRLDPGSSLVIDWKESGGPP CCCEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCC VQPPSRRGFGTTIIERSVPFDLKGDAEIRFDLLGVQARFVIPANFVQMVPALSGAPSRQQ CCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHCCCCCHHH TKEEQTPRLSGTVLIVEDNLIIAMGAEVILLELGARHIDTAASVNQALKSIERAVPSFAL HHHHCCCCCCCEEEEEECCEEEEECCCEEEEHHCCHHHHHHHHHHHHHHHHHHHCCCEEE LDINLGAESSLPVGHRLKELGVPFMFATGYGERAPIPAELSEAPVIQKPYTRELVEKALS EEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KMMKQAAPARDPG HHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]