| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is cirA [C]
Identifier: 146339010
GI number: 146339010
Start: 2082070
End: 2084421
Strand: Reverse
Name: cirA [C]
Synonym: BRADO1959
Alternate gene names: 146339010
Gene position: 2084421-2082070 (Counterclockwise)
Preceding gene: 146339011
Following gene: 146339005
Centisome position: 27.95
GC content: 66.88
Gene sequence:
>2352_bases ATGAGACAGATGTTGCCGAGAGCCTTGATGTCGGGCTGCAGCGCCGCAGCCATATTATGCATTTTGAGCGCGCCTGCACG CGCCGACGATCCGAAGCAGGCAACCGAGCTGCCGGAGGTCAACGTTACGGCGCCGAGCCCGATCCGCGCGCGCAAGCCGG TGGTGCCGCGGCCCAATGCCGGAGCACGCGTGGCCCGGAGCGGCACGCGCGCCCGGGCGCCCGCGCAAACGGCGCAGAGC GCGCCGCCTCCGCCGCAACAGGGCGTGACCCCTGTTGTCACCGACCAGTTCGCTACCGTCACCGTGGTGCCGAACGAGGA GCTGCGCCGCTCGGGCGCCGCCACGCTCGGCGATCTGCTGAACTCCAAGCCCGGCATCACCGGATCGAGCTTCGCGCCGG GCGCGTCGAGCCGGCCGATCATCCGCGGCCTCGATGTCAACCGCGTCGGCATTGTCGAGAACGGCATCGGCGGCGGCGGC GCGTCGGATCTCGGTGAGGACCATTTCGTGCCGATCGATCCGCTCACCAGCGACCAGATCGAGGTGGTCCGCGGCCCAGC CGCGCTGCGCTACGGCTCGACCTCGATCGGCGGCGTCGTCAGCGCCACCAACAACCGCATTCCGAGCGCGCTGCCGACCT GCTCGACCGCGCCGTTCCAGACCTATGGTCTGCCCGCGAGCGCGCCGGTCGCGGGTAGCGCGCCATGCGTCACTGCGGAG ACCCGCACCTCGGTCAGCTCGGTAGATCGCGGCGTCGAAGGCGGCGTGTTGCTCGATGCCGGCAGTGGCAATTTTGCGCT TCACGCCGACGCCTTTGGCCGCAAGACCGGTGACTATGCGATCCCCGGCTATCCCTACCGGTTCGATCAGACTCGTCCGG TGAACGGCCGGCAGCCGAACTCGGCCGTGCAGAATGACGGCGTCTCGATCGGCGGCAGCTACTTCTTCACCGGCGGCTTC ATTGGCGCGGCGATCCAGCAGACCGACGCGCTCTACCACATCCCCGGAATCGACGGCGCCGACAGCCGGACCCGCATCGA TGCGCATCAGACCAAGATCACGGCTAAAGGCGAATACCGGCCGGATTCGGCCGCGATCGACGCCATCCGCTTCTGGGCCG GCGCGACCGACTATCGGCACAATGAAATCGGCCTCGCCGACCCCGCTGATCCGACCACCGACGGCGTGCGTCAGACCTTC ACCAACCGCGAGCAGGAAGCCCGCGTCGAGATGCAGATGATGCCCGTCAATCTGCGCTTCGCGACGTTGACGACCGCCTA CGGCGTGCAGGCCGGCCACCAGGAGCTCAATGCCCCGAGCCCCGACAATCCCGGCTCGGTGTTCAACGGCCTGTTTGGTC CCAACACCAACAACCGCGTCGCCGGCTACGTGTTCAACGAGCTCGCGTTTACGCCCTCGACCAGGGCGCAGATCGCCGGC CGCATCGAGCATGTGTCGCTGAACGGTTCGACGCCGAACTTCCCGGTCGACTATCTGCCTGACGGCACGCCGCAGGCCAA TATCGCCCGCAACCCGTCGTACACGCCGAAGAGCGCGAGCGTCGGCGTGCTACAGAACCTGCCGGGTGACCTGGTCGCCA GCATCACCGCCCAATATGTCGAGCGCGCGCCGAAGGCGGCCGAGCTTTTCTCCCGCGGCGGCCACGATGCGACGGCGACG TTCGACATCGGCAATCCGAACCTCGGAATAGAGACTGCCAAGACCATCGAGGCGGGCTTGCGCAAGGCAACCGGTCCGTT CCGCTTCGAGGCGACGGCCTACTACACGCAGTTCAGCAATTTCATCTATCGCCGGCTGACCGGCGTGATGTGCGACAACG ATTTCGCCTCCTGCGGCACCACCGGCACTGCGCTGAACCAGGCCGTCTACTCGCAGCGCAACGCGCTGTTCCGTGGCGCC GAGTTTCAGAGCCAGTTCGACGTCGCGCAGCTCGGCGGCGGCATCTGGGGCATCGAAAACCAGTTCGACGTCGTCCGTGC CACCTTCCCCGACGGCACCAATGTGCCGCGGATCCCGCCGATGCGCGTCGGCGGCGGCCTGTTCTGGCGCGATGCCAACT GGCTGACGCGGATCAACCTGCTGCACGCCTTCGCGCAGAACGACGTCGCTGCCATCGCGGAGACGCCGACGCCGGGCTAC AACCTGCTCAAGGCCGAGGTCAGCTACCGCACCAAGCTCGATCCGAACATGTTCGGCGCGCGCGAGATGCTGGTCGGCCT GGTCGGCAACAACCTGCTCAACGAGAAGATCCGCAACTCCGTGTCCTACACCAAGGATGAGGTGCTGCTGCCCGGCATCG GCGTGCGGATCTTTGCCAATCTGAAGTTTTGA
Upstream 100 bases:
>100_bases GCGTCCGGTGGCGCGTGCACTCTTGGGTCCGTCGCGAGCCGACGGCAGGCGCATCCCCAACAACACTGACGATTGCGGGA CCGCCTGATCAAGATCAGGA
Downstream 100 bases:
>100_bases GCGACGATCTCACCTCTCCTCGTGAAGAACGAGGAGAGGGAGAACGGCTGCGTAGCCCGGATGAGCGCAGCGACATCCGG GTTCAACGAGACACCGCGTG
Product: putative outer membrane hemin/siderophore receptor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 783
Protein sequence:
>783_residues MRQMLPRALMSGCSAAAILCILSAPARADDPKQATELPEVNVTAPSPIRARKPVVPRPNAGARVARSGTRARAPAQTAQS APPPPQQGVTPVVTDQFATVTVVPNEELRRSGAATLGDLLNSKPGITGSSFAPGASSRPIIRGLDVNRVGIVENGIGGGG ASDLGEDHFVPIDPLTSDQIEVVRGPAALRYGSTSIGGVVSATNNRIPSALPTCSTAPFQTYGLPASAPVAGSAPCVTAE TRTSVSSVDRGVEGGVLLDAGSGNFALHADAFGRKTGDYAIPGYPYRFDQTRPVNGRQPNSAVQNDGVSIGGSYFFTGGF IGAAIQQTDALYHIPGIDGADSRTRIDAHQTKITAKGEYRPDSAAIDAIRFWAGATDYRHNEIGLADPADPTTDGVRQTF TNREQEARVEMQMMPVNLRFATLTTAYGVQAGHQELNAPSPDNPGSVFNGLFGPNTNNRVAGYVFNELAFTPSTRAQIAG RIEHVSLNGSTPNFPVDYLPDGTPQANIARNPSYTPKSASVGVLQNLPGDLVASITAQYVERAPKAAELFSRGGHDATAT FDIGNPNLGIETAKTIEAGLRKATGPFRFEATAYYTQFSNFIYRRLTGVMCDNDFASCGTTGTALNQAVYSQRNALFRGA EFQSQFDVAQLGGGIWGIENQFDVVRATFPDGTNVPRIPPMRVGGGLFWRDANWLTRINLLHAFAQNDVAAIAETPTPGY NLLKAEVSYRTKLDPNMFGAREMLVGLVGNNLLNEKIRNSVSYTKDEVLLPGIGVRIFANLKF
Sequences:
>Translated_783_residues MRQMLPRALMSGCSAAAILCILSAPARADDPKQATELPEVNVTAPSPIRARKPVVPRPNAGARVARSGTRARAPAQTAQS APPPPQQGVTPVVTDQFATVTVVPNEELRRSGAATLGDLLNSKPGITGSSFAPGASSRPIIRGLDVNRVGIVENGIGGGG ASDLGEDHFVPIDPLTSDQIEVVRGPAALRYGSTSIGGVVSATNNRIPSALPTCSTAPFQTYGLPASAPVAGSAPCVTAE TRTSVSSVDRGVEGGVLLDAGSGNFALHADAFGRKTGDYAIPGYPYRFDQTRPVNGRQPNSAVQNDGVSIGGSYFFTGGF IGAAIQQTDALYHIPGIDGADSRTRIDAHQTKITAKGEYRPDSAAIDAIRFWAGATDYRHNEIGLADPADPTTDGVRQTF TNREQEARVEMQMMPVNLRFATLTTAYGVQAGHQELNAPSPDNPGSVFNGLFGPNTNNRVAGYVFNELAFTPSTRAQIAG RIEHVSLNGSTPNFPVDYLPDGTPQANIARNPSYTPKSASVGVLQNLPGDLVASITAQYVERAPKAAELFSRGGHDATAT FDIGNPNLGIETAKTIEAGLRKATGPFRFEATAYYTQFSNFIYRRLTGVMCDNDFASCGTTGTALNQAVYSQRNALFRGA EFQSQFDVAQLGGGIWGIENQFDVVRATFPDGTNVPRIPPMRVGGGLFWRDANWLTRINLLHAFAQNDVAAIAETPTPGY NLLKAEVSYRTKLDPNMFGAREMLVGLVGNNLLNEKIRNSVSYTKDEVLLPGIGVRIFANLKF >Mature_783_residues MRQMLPRALMSGCSAAAILCILSAPARADDPKQATELPEVNVTAPSPIRARKPVVPRPNAGARVARSGTRARAPAQTAQS APPPPQQGVTPVVTDQFATVTVVPNEELRRSGAATLGDLLNSKPGITGSSFAPGASSRPIIRGLDVNRVGIVENGIGGGG ASDLGEDHFVPIDPLTSDQIEVVRGPAALRYGSTSIGGVVSATNNRIPSALPTCSTAPFQTYGLPASAPVAGSAPCVTAE TRTSVSSVDRGVEGGVLLDAGSGNFALHADAFGRKTGDYAIPGYPYRFDQTRPVNGRQPNSAVQNDGVSIGGSYFFTGGF IGAAIQQTDALYHIPGIDGADSRTRIDAHQTKITAKGEYRPDSAAIDAIRFWAGATDYRHNEIGLADPADPTTDGVRQTF TNREQEARVEMQMMPVNLRFATLTTAYGVQAGHQELNAPSPDNPGSVFNGLFGPNTNNRVAGYVFNELAFTPSTRAQIAG RIEHVSLNGSTPNFPVDYLPDGTPQANIARNPSYTPKSASVGVLQNLPGDLVASITAQYVERAPKAAELFSRGGHDATAT FDIGNPNLGIETAKTIEAGLRKATGPFRFEATAYYTQFSNFIYRRLTGVMCDNDFASCGTTGTALNQAVYSQRNALFRGA EFQSQFDVAQLGGGIWGIENQFDVVRATFPDGTNVPRIPPMRVGGGLFWRDANWLTRINLLHAFAQNDVAAIAETPTPGY NLLKAEVSYRTKLDPNMFGAREMLVGLVGNNLLNEKIRNSVSYTKDEVLLPGIGVRIFANLKF
Specific function: Probable receptor, tonB-dependent [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83085; Mature: 83085
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQMLPRALMSGCSAAAILCILSAPARADDPKQATELPEVNVTAPSPIRARKPVVPRPNA CHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCC GARVARSGTRARAPAQTAQSAPPPPQQGVTPVVTDQFATVTVVPNEELRRSGAATLGDLL CCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCEEEEEECCCHHHHHCCCHHHHHHH NSKPGITGSSFAPGASSRPIIRGLDVNRVGIVENGIGGGGASDLGEDHFVPIDPLTSDQI CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCE EVVRGPAALRYGSTSIGGVVSATNNRIPSALPTCSTAPFQTYGLPASAPVAGSAPCVTAE EEEECCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEECH TRTSVSSVDRGVEGGVLLDAGSGNFALHADAFGRKTGDYAIPGYPYRFDQTRPVNGRQPN HHHHHHHHHCCCCCCEEEECCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC SAVQNDGVSIGGSYFFTGGFIGAAIQQTDALYHIPGIDGADSRTRIDAHQTKITAKGEYR CHHHCCCEEECCCEEEECCHHHHHHHHCCCEEECCCCCCCCCCEEEEHHHEEEEECCCCC PDSAAIDAIRFWAGATDYRHNEIGLADPADPTTDGVRQTFTNREQEARVEMQMMPVNLRF CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHEEEEEEEEEEEEE ATLTTAYGVQAGHQELNAPSPDNPGSVFNGLFGPNTNNRVAGYVFNELAFTPSTRAQIAG EEEHHHHCCHHCHHHCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEECCCCHHHHHCC RIEHVSLNGSTPNFPVDYLPDGTPQANIARNPSYTPKSASVGVLQNLPGDLVASITAQYV EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH ERAPKAAELFSRGGHDATATFDIGNPNLGIETAKTIEAGLRKATGPFRFEATAYYTQFSN HHCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHH FIYRRLTGVMCDNDFASCGTTGTALNQAVYSQRNALFRGAEFQSQFDVAQLGGGIWGIEN HHHHHHHHHEECCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCEECCCC QFDVVRATFPDGTNVPRIPPMRVGGGLFWRDANWLTRINLLHAFAQNDVAAIAETPTPGY CCEEEEEECCCCCCCCCCCCEECCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC NLLKAEVSYRTKLDPNMFGAREMLVGLVGNNLLNEKIRNSVSYTKDEVLLPGIGVRIFAN EEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEE LKF ECC >Mature Secondary Structure MRQMLPRALMSGCSAAAILCILSAPARADDPKQATELPEVNVTAPSPIRARKPVVPRPNA CHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHCCCCEECCCCCCCCCCCCCCCCCCC GARVARSGTRARAPAQTAQSAPPPPQQGVTPVVTDQFATVTVVPNEELRRSGAATLGDLL CCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCEEECCEEEEEECCCHHHHHCCCHHHHHHH NSKPGITGSSFAPGASSRPIIRGLDVNRVGIVENGIGGGGASDLGEDHFVPIDPLTSDQI CCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCE EVVRGPAALRYGSTSIGGVVSATNNRIPSALPTCSTAPFQTYGLPASAPVAGSAPCVTAE EEEECCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEECH TRTSVSSVDRGVEGGVLLDAGSGNFALHADAFGRKTGDYAIPGYPYRFDQTRPVNGRQPN HHHHHHHHHCCCCCCEEEECCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC SAVQNDGVSIGGSYFFTGGFIGAAIQQTDALYHIPGIDGADSRTRIDAHQTKITAKGEYR CHHHCCCEEECCCEEEECCHHHHHHHHCCCEEECCCCCCCCCCEEEEHHHEEEEECCCCC PDSAAIDAIRFWAGATDYRHNEIGLADPADPTTDGVRQTFTNREQEARVEMQMMPVNLRF CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHEEEEEEEEEEEEE ATLTTAYGVQAGHQELNAPSPDNPGSVFNGLFGPNTNNRVAGYVFNELAFTPSTRAQIAG EEEHHHHCCHHCHHHCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEECCCCHHHHHCC RIEHVSLNGSTPNFPVDYLPDGTPQANIARNPSYTPKSASVGVLQNLPGDLVASITAQYV EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH ERAPKAAELFSRGGHDATATFDIGNPNLGIETAKTIEAGLRKATGPFRFEATAYYTQFSN HHCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHH FIYRRLTGVMCDNDFASCGTTGTALNQAVYSQRNALFRGAEFQSQFDVAQLGGGIWGIEN HHHHHHHHHEECCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCEECCCC QFDVVRATFPDGTNVPRIPPMRVGGGLFWRDANWLTRINLLHAFAQNDVAAIAETPTPGY CCEEEEEECCCCCCCCCCCCEECCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCC NLLKAEVSYRTKLDPNMFGAREMLVGLVGNNLLNEKIRNSVSYTKDEVLLPGIGVRIFAN EEEEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCCEEEEEE LKF ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]