Click here to switch to the map view.

The map label for this gene is yciK [C]

Identifier: 146338985

GI number: 146338985

Start: 2055800

End: 2056567

Strand: Reverse

Name: yciK [C]

Synonym: BRADO1933

Alternate gene names: 146338985

Gene position: 2056567-2055800 (Counterclockwise)

Preceding gene: 146338986

Following gene: 146338984

Centisome position: 27.58

GC content: 70.31

Gene sequence:

>768_bases
ATGGCGATCGTCTTCATCACCGGCAGCACCGACGGACTCGGACGCGCCGCCGCGCAATCGCTGCTCGATCGAGGGCATCG
CGTGGTGCTGCACGCCCGCACTGCCGATCGCGCGGCCGCGCTCGGCGAACTCGGCTCACGGGCGGCCGGGATCGCGCTGG
GCAATCTCGGCAGCGCCACGGAGACGCGCCGCATCGCCGAGCAGGTCAACGCGATGGGGCGCATGGACGCCATCATCCAC
AACGCCGGCGTCTATTCGCAGCCGGATCGCGGTGCGACTCCGGAAGGGCACGCCATCACTTTCGCCGTCAACACGCTCGC
GCCCTACATGCTCACGGCCTTGATCAAGCGCCCGGTGCGGCTGGTGTATCTCAGCAGCGGGCTGCATCGCGGCGGCGAAG
GCTCGCTCGCCGATCTCGACTGGACGAAGCGGCCCTGGGATTCGGGGAAGGCCTATGCCGAGACCAAGCTGCACGTCGTG
GCCCTGGCCTTCGCGCTGGCGCGGCGCTGGCCAGGCGTGTTGAGCAATGCCGTCGACCCCGGCTGGGTGCGCACACGCAT
GGGCGGAGCCGGCGCCCCCGTCGACATCGATACCGGACAGCAAACCCAGAGCTGGCTCGCCGTGAGCGACGATCCCGAGG
CCCTGCTCAGCGGCCGCTACTGGCACCAGCTCCGGCAACAGGAGCCGGCGCGCGAAGCCACCGAGCCGGCGTTCCAGGAC
GCGCTGATCGCCAGACTGGCCGACTTGACCGGAGTGGCGCTGCCGTAG

Upstream 100 bases:

>100_bases
TGATGGTGCCATGACCGGCTGCTGCGCGTTGTGATCGGCCGCCGCGACCGGCTCGGCGCGGCGGCCATCCCGCACCCTGA
CACATTCAAAGGATCAACGC

Downstream 100 bases:

>100_bases
CGCGCTCGACCCCAACGGTCATGCCCGCGAAGGCGGGCATCCAGTGCGCAGCGGCCTCTCGGCTGATGACGACTGCCGGC
GATTACTGGATCCCCGCCTT

Product: putative short chain dehydrogenase

Products: NA

Alternate protein names: Oxidoreductase; Short Chain Dehydrogenase; Retinol Dehydrogenase; Daunorubicin C-13 Ketoreductase; Short-Chain Dehydrogenase/Reductase Sdr; Dehydrogenase; Oxidoreductase Short Chain Dehydrogenase/Reductase Family; FabG Protein; Gluconate 5-Dehydrogenase; Alcohol Dehydrogenase; Ketoreductase; 3-Oxoacyl-[Acyl-Carrier-Protein] Reductase; Short-Chain Alcohol Dehydrogenase Family Protein; Short-Chain Dehydrogenase/Reductase Family Oxidoreductase; Short-Chain Dehydrogenase; Short Chain Oxidoreductase; Short-Chain Dehydrogenase/Reductase Family Protein; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; Dehydrogenase/Reductase; 3-Oxoacyl-(Acyl-Carrier Protein) Reductase Protein; Dehydrogenase/Reductase Family Protein; Short-Chain Alcohol Dehydrogenase; Short-Chain Dehydrogenase/Reductase; Short-Chain Family Oxidoreductase; NAD Dependent Epimerase/Dehydratase Family; Oxidoreducatse Protein; Protochlorophyllide Reductase

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MAIVFITGSTDGLGRAAAQSLLDRGHRVVLHARTADRAAALGELGSRAAGIALGNLGSATETRRIAEQVNAMGRMDAIIH
NAGVYSQPDRGATPEGHAITFAVNTLAPYMLTALIKRPVRLVYLSSGLHRGGEGSLADLDWTKRPWDSGKAYAETKLHVV
ALAFALARRWPGVLSNAVDPGWVRTRMGGAGAPVDIDTGQQTQSWLAVSDDPEALLSGRYWHQLRQQEPAREATEPAFQD
ALIARLADLTGVALP

Sequences:

>Translated_255_residues
MAIVFITGSTDGLGRAAAQSLLDRGHRVVLHARTADRAAALGELGSRAAGIALGNLGSATETRRIAEQVNAMGRMDAIIH
NAGVYSQPDRGATPEGHAITFAVNTLAPYMLTALIKRPVRLVYLSSGLHRGGEGSLADLDWTKRPWDSGKAYAETKLHVV
ALAFALARRWPGVLSNAVDPGWVRTRMGGAGAPVDIDTGQQTQSWLAVSDDPEALLSGRYWHQLRQQEPAREATEPAFQD
ALIARLADLTGVALP
>Mature_254_residues
AIVFITGSTDGLGRAAAQSLLDRGHRVVLHARTADRAAALGELGSRAAGIALGNLGSATETRRIAEQVNAMGRMDAIIHN
AGVYSQPDRGATPEGHAITFAVNTLAPYMLTALIKRPVRLVYLSSGLHRGGEGSLADLDWTKRPWDSGKAYAETKLHVVA
LAFALARRWPGVLSNAVDPGWVRTRMGGAGAPVDIDTGQQTQSWLAVSDDPEALLSGRYWHQLRQQEPAREATEPAFQDA
LIARLADLTGVALP

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI225579078, Length=284, Percent_Identity=29.5774647887324, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI10190746, Length=276, Percent_Identity=29.3478260869565, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI19923931, Length=228, Percent_Identity=30.7017543859649, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI45553409, Length=252, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24647948, Length=252, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24647946, Length=252, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI45554248, Length=200, Percent_Identity=32, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640117, Length=200, Percent_Identity=32, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076371, Length=199, Percent_Identity=28.643216080402, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24586328, Length=264, Percent_Identity=28.4090909090909, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI22024069, Length=199, Percent_Identity=28.1407035175879, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27173; Mature: 27042

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVFITGSTDGLGRAAAQSLLDRGHRVVLHARTADRAAALGELGSRAAGIALGNLGSAT
CEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCHHHCEEECCCCCHH
ETRRIAEQVNAMGRMDAIIHNAGVYSQPDRGATPEGHAITFAVNTLAPYMLTALIKRPVR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCE
LVYLSSGLHRGGEGSLADLDWTKRPWDSGKAYAETKLHVVALAFALARRWPGVLSNAVDP
EEEEECCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
GWVRTRMGGAGAPVDIDTGQQTQSWLAVSDDPEALLSGRYWHQLRQQEPAREATEPAFQD
CHHHHCCCCCCCCEECCCCCCCCCEEEECCCHHHHHCCHHHHHHHHCCCHHHHCCHHHHH
ALIARLADLTGVALP
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
AIVFITGSTDGLGRAAAQSLLDRGHRVVLHARTADRAAALGELGSRAAGIALGNLGSAT
EEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCHHHCEEECCCCCHH
ETRRIAEQVNAMGRMDAIIHNAGVYSQPDRGATPEGHAITFAVNTLAPYMLTALIKRPVR
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCE
LVYLSSGLHRGGEGSLADLDWTKRPWDSGKAYAETKLHVVALAFALARRWPGVLSNAVDP
EEEEECCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
GWVRTRMGGAGAPVDIDTGQQTQSWLAVSDDPEALLSGRYWHQLRQQEPAREATEPAFQD
CHHHHCCCCCCCCEECCCCCCCCCEEEECCCHHHHHCCHHHHHHHHCCCHHHHCCHHHHH
ALIARLADLTGVALP
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA