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The map label for this gene is ycfQ [H]

Identifier: 146338953

GI number: 146338953

Start: 2019957

End: 2020514

Strand: Direct

Name: ycfQ [H]

Synonym: BRADO1896

Alternate gene names: 146338953

Gene position: 2019957-2020514 (Clockwise)

Preceding gene: 146338952

Following gene: 146338954

Centisome position: 27.09

GC content: 67.74

Gene sequence:

>558_bases
ATGGACACCGCCCTGGGCAAGGCGCTGGTGGTCTTCAGCGAGCGTGGTTATCACGCGGCGTCCCTGGCTGAATTGCGCGC
CGCCATGAAGCTTGCCACCGGCAGTCTCTACAAGGCGTTCGCGGACAAGCGCGCGATCTTCCTGGCGACGCTCGATTACT
ACATCGCCCGCCGCGACCGGCAGTTGCGCGAGCGGCTCGACGCGCAGGCGAGCGGCCGCTCCAAGCTGGAGGCGCTGCTG
CAGTTCTACGCCGAATCCGCCAGCGACAGCGAAGGCCGGCGCGGCTGCCTCGTGGTCACCAGCGCGACCGAGCTCGCTAC
CCTGGATGCGGAGGCCGCAGCCAAGGTACGCGCGGCGTTGCGCCGGGTCGAGACCCTGCTGCGCGACCTGCTCAGGCTGG
GCCAGGCCGACGGATCGATCCGCAAAGAGCTGGACCCCGACGCCGTCGCGGGCGCTCTTTTCTGCATCATCCAGGGCTTG
CGGGTGGTCGGGAAAACGGGGCGGCCAAAGAGCGAGATGACAAGCATCTCGAAGCAAGCCGCGTCCATGTTCACGTGA

Upstream 100 bases:

>100_bases
TCTTGATTTGGAAACGATCATTTCCTAAATAGATCACATGATGAAGTCGCAAACAAATCTATCCGAGCGGCGCGGGCCGG
GCCGTCCGCGCGAGTTCGAT

Downstream 100 bases:

>100_bases
CGCCGTGTCAAAATAGGAAACGAATGTTCTATAATTTGGAGAATGAACCATGAGCGAGTTGACGGACACCCTCTATGACC
AAACGCCGTCGCAGCTGGTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MDTALGKALVVFSERGYHAASLAELRAAMKLATGSLYKAFADKRAIFLATLDYYIARRDRQLRERLDAQASGRSKLEALL
QFYAESASDSEGRRGCLVVTSATELATLDAEAAAKVRAALRRVETLLRDLLRLGQADGSIRKELDPDAVAGALFCIIQGL
RVVGKTGRPKSEMTSISKQAASMFT

Sequences:

>Translated_185_residues
MDTALGKALVVFSERGYHAASLAELRAAMKLATGSLYKAFADKRAIFLATLDYYIARRDRQLRERLDAQASGRSKLEALL
QFYAESASDSEGRRGCLVVTSATELATLDAEAAAKVRAALRRVETLLRDLLRLGQADGSIRKELDPDAVAGALFCIIQGL
RVVGKTGRPKSEMTSISKQAASMFT
>Mature_185_residues
MDTALGKALVVFSERGYHAASLAELRAAMKLATGSLYKAFADKRAIFLATLDYYIARRDRQLRERLDAQASGRSKLEALL
QFYAESASDSEGRRGCLVVTSATELATLDAEAAAKVRAALRRVETLLRDLLRLGQADGSIRKELDPDAVAGALFCIIQGL
RVVGKTGRPKSEMTSISKQAASMFT

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=170, Percent_Identity=30.5882352941176, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20073; Mature: 20073

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTALGKALVVFSERGYHAASLAELRAAMKLATGSLYKAFADKRAIFLATLDYYIARRDR
CCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
QLRERLDAQASGRSKLEALLQFYAESASDSEGRRGCLVVTSATELATLDAEAAAKVRAAL
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
RRVETLLRDLLRLGQADGSIRKELDPDAVAGALFCIIQGLRVVGKTGRPKSEMTSISKQA
HHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ASMFT
HHHCC
>Mature Secondary Structure
MDTALGKALVVFSERGYHAASLAELRAAMKLATGSLYKAFADKRAIFLATLDYYIARRDR
CCCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
QLRERLDAQASGRSKLEALLQFYAESASDSEGRRGCLVVTSATELATLDAEAAAKVRAAL
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
RRVETLLRDLLRLGQADGSIRKELDPDAVAGALFCIIQGLRVVGKTGRPKSEMTSISKQA
HHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
ASMFT
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]