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The map label for this gene is 146338925

Identifier: 146338925

GI number: 146338925

Start: 1990740

End: 1991165

Strand: Direct

Name: 146338925

Synonym: BRADO1865

Alternate gene names: NA

Gene position: 1990740-1991165 (Clockwise)

Preceding gene: 146338923

Following gene: 146338926

Centisome position: 26.7

GC content: 65.96

Gene sequence:

>426_bases
TTGCGGAGCAGCGCGAGGGCGGGCGGCAGCATCGAGATCTGCTCGCGCCTGACGAGCTGCTTCACCCACCACATCGGGTC
ATGCGGGCGACGGTCCGGCCGAGGCCTCGCGCAGATCATCGAGAAGCTGTCGCTGTACCTGAAGGGATGGCGCGGCTACT
TCGGGTTCTGCGAGACGCCGTCGGTGTTGCGCAAGCTGGATGAGTGGATCAGACGGCGGTTGCGCGCTGTCGTCTGGACC
CAATGGAAGCACGGTCGCACTCGCTTCGACGAACTGCAACGCCGCGGCGTTGGCCGGGAGCTGGCACTCAAGACAGCCGG
CAACCCACGTGGCCCTTGGCGGCTCGCGAACAGTGCCGGGCTGACCATGGCTCTGCCGAACATCTTCTTCGCCTCACGCG
GCTTGCCTTACCTCGCAACCCGCTAA

Upstream 100 bases:

>100_bases
CGCGTTGGCCTTGGCGATCTCCGAATTGAGGCCCGCAACCTCGCGCCGGACCGCGGCCTCGTCCGGGAGGGTCTCGATCG
CCGCCACCTGCTTCTCGACC

Downstream 100 bases:

>100_bases
ACCGCTCAATCTGTCGAACCGCCGTATAAGTGACCCGTACGTACGGTGGTGTGGGAGGGGAGGAGTCGCGAGACTCCCCC
CTATCCCGATTCAGCCGAGG

Product: putative recombinase

Products: NA

Alternate protein names: Recombinase; Reverse Transcriptase/Maturase Family Protein; Reverse Transcriptase/Maturase; Group II Intron-Encoding Maturase; Group II Intron Maturase-Specific Domain Protein; Group II Intron Maturase-Specific Domain-Containing Protein; Group II Intron-Encoding Maturase Variant; Transposase; Retron-Type Reverse Transcriptase; Ecombinase For Bh.Int; Group II Intron-Encoded Maturase; Integron/Retron-Type RNA-Directed DNA Polymerase; Group II Intron Maturase; Group II Intron-Encoded Protein; Reverse Transcriptasematurase Protein; Na-Directed DNA Polymerase

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MRSSARAGGSIEICSRLTSCFTHHIGSCGRRSGRGLAQIIEKLSLYLKGWRGYFGFCETPSVLRKLDEWIRRRLRAVVWT
QWKHGRTRFDELQRRGVGRELALKTAGNPRGPWRLANSAGLTMALPNIFFASRGLPYLATR

Sequences:

>Translated_141_residues
MRSSARAGGSIEICSRLTSCFTHHIGSCGRRSGRGLAQIIEKLSLYLKGWRGYFGFCETPSVLRKLDEWIRRRLRAVVWT
QWKHGRTRFDELQRRGVGRELALKTAGNPRGPWRLANSAGLTMALPNIFFASRGLPYLATR
>Mature_141_residues
MRSSARAGGSIEICSRLTSCFTHHIGSCGRRSGRGLAQIIEKLSLYLKGWRGYFGFCETPSVLRKLDEWIRRRLRAVVWT
QWKHGRTRFDELQRRGVGRELALKTAGNPRGPWRLANSAGLTMALPNIFFASRGLPYLATR

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16007; Mature: 16007

Theoretical pI: Translated: 12.03; Mature: 12.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSARAGGSIEICSRLTSCFTHHIGSCGRRSGRGLAQIIEKLSLYLKGWRGYFGFCETP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
SVLRKLDEWIRRRLRAVVWTQWKHGRTRFDELQRRGVGRELALKTAGNPRGPWRLANSAG
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHEEEECCCCCCCCCEECCCCC
LTMALPNIFFASRGLPYLATR
CHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MRSSARAGGSIEICSRLTSCFTHHIGSCGRRSGRGLAQIIEKLSLYLKGWRGYFGFCETP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
SVLRKLDEWIRRRLRAVVWTQWKHGRTRFDELQRRGVGRELALKTAGNPRGPWRLANSAG
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHEEEECCCCCCCCCEECCCCC
LTMALPNIFFASRGLPYLATR
CHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA