| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yhjE [C]
Identifier: 146338784
GI number: 146338784
Start: 1835680
End: 1836987
Strand: Reverse
Name: yhjE [C]
Synonym: BRADO1718
Alternate gene names: 146338784
Gene position: 1836987-1835680 (Counterclockwise)
Preceding gene: 146338792
Following gene: 146338771
Centisome position: 24.64
GC content: 65.9
Gene sequence:
>1308_bases ATGACACAGGCAGCGGCCATGGACGGCGAGACCGATCTCTCCCGCAGGCATGAAGCGAACCCGGGCGAGATCGCGATCGG GGTCATCATCGGGCGTACGTCGGAGTTCTTCGACTTCTTCGTCTACGCCATCGCCTCCGTGATCGTGTTTCCGCGCCTGG TGTTCCCGTTCGCCGACGAGCTGACGCAGACGCTGTATTCCTTCGGCCTGTTCGCCCTCGCCTTCATTGCGCGCCCGTTC GGCAGCGTCATCTTCATGGCGATCGACCGCCGCTACGGCAAGAGCGCCAAGCTGATCATCGCGCTTTTCCTGCTCGGCAC CTCCACCGTCGCGATCGCCTTCCTGCCGAGCTACTACACCGTCGGCGCCGGAGCGATCTGGCTGCTGGCGCTGGCGCGCA TCGGCCAGGGCCTCGCCTGGGGCGGCGCCTGGGACGGGTTGGCGTCGCTGCTCGCGATGAACGCGCCGGAGCATCAGCGC GGGTGGTATGCGATGATCCCGCAACTCGGCGCGCCGCTCGGTCTGATCGTCGCCAGCACGCTGTTCGCCTTCTTCGTCGG CCATCTCTCGGCGGCGGACTTCTTCGACTGGGGCTGGCGCTATCCGTTCTTCGTGGCATTTGCCATCAATGTGGTGGCGC TGTTCGCGCGGCTGCGCATGGTGGTCACCCCCGAATATGACGAGCTGTTCCAGTCGCGTGAATTGCAGCCGGCCAGCGTC GCCAACACCATCCGCCACGAGGGCCGCAACATCGTGATCGGCGCCTTCGCCCCGCTGGCGAGCTTCGCCCTCTTCCACAT GGTGACGGTGTTTCCGCTGTCCTGGGTGTTCCTGTTCACCAAGGAGACGCCGGCACGCTTCCTGATCATCGAGGCCGTCG GCGCCGTATTCGGCGTGATCGCGATCGTCGCCTCGGGCATGCTCGCCGACCGCATCGGCCGCAAGTCGCTGCTGATCGGC TCGGCAATTGCGATCGCCGTATTCTCCGGCTTCGCGCCGCAGCTGCTCGACGCCGGCCCGGTCGGCGAGACCATCTACAT GGTCCTCGGCTTCATCCTGCTCGGCCTGTCGTTCGGCCAGTCGTCAGGTGCGATCGCCGCCAACTTCGCCCGCACCTATC GCTACACGGCGTCCGCACTGACGGCCGATTTGGCGTGGCTGTTCGGCGCAGGATTTGCGCCACTCGCGGCGCTGCTGCTG GCGTCTTATTTCGGCCTGCTGTCGGCCGGCGGCTATCTGCTGTCAGGCGCGGTGTGCACGTTGCTGGCGCTGTGGCTGAG TGCACCAAGGCAGTTGGAGCAGACGTAA
Upstream 100 bases:
>100_bases GGAGGTCACGCCCAACATTGGACAATTTGTCCAATACCGGACCGACGCCCGGCCAGACATCTACGGTTCGAGATAGAGTG CGAGAGGACTGCGAGCAGCG
Downstream 100 bases:
>100_bases AGACGCGAGCGGTTCACGAGCCGCGCCACTTCCGCTCCGCCTCGTCCCACGCCGCCAGCGGCTGCAGGTCCGGCACCCAC GCAAGTCCCGTCTTGGCATC
Product: major facilitator superfamily sugar transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MTQAAAMDGETDLSRRHEANPGEIAIGVIIGRTSEFFDFFVYAIASVIVFPRLVFPFADELTQTLYSFGLFALAFIARPF GSVIFMAIDRRYGKSAKLIIALFLLGTSTVAIAFLPSYYTVGAGAIWLLALARIGQGLAWGGAWDGLASLLAMNAPEHQR GWYAMIPQLGAPLGLIVASTLFAFFVGHLSAADFFDWGWRYPFFVAFAINVVALFARLRMVVTPEYDELFQSRELQPASV ANTIRHEGRNIVIGAFAPLASFALFHMVTVFPLSWVFLFTKETPARFLIIEAVGAVFGVIAIVASGMLADRIGRKSLLIG SAIAIAVFSGFAPQLLDAGPVGETIYMVLGFILLGLSFGQSSGAIAANFARTYRYTASALTADLAWLFGAGFAPLAALLL ASYFGLLSAGGYLLSGAVCTLLALWLSAPRQLEQT
Sequences:
>Translated_435_residues MTQAAAMDGETDLSRRHEANPGEIAIGVIIGRTSEFFDFFVYAIASVIVFPRLVFPFADELTQTLYSFGLFALAFIARPF GSVIFMAIDRRYGKSAKLIIALFLLGTSTVAIAFLPSYYTVGAGAIWLLALARIGQGLAWGGAWDGLASLLAMNAPEHQR GWYAMIPQLGAPLGLIVASTLFAFFVGHLSAADFFDWGWRYPFFVAFAINVVALFARLRMVVTPEYDELFQSRELQPASV ANTIRHEGRNIVIGAFAPLASFALFHMVTVFPLSWVFLFTKETPARFLIIEAVGAVFGVIAIVASGMLADRIGRKSLLIG SAIAIAVFSGFAPQLLDAGPVGETIYMVLGFILLGLSFGQSSGAIAANFARTYRYTASALTADLAWLFGAGFAPLAALLL ASYFGLLSAGGYLLSGAVCTLLALWLSAPRQLEQT >Mature_434_residues TQAAAMDGETDLSRRHEANPGEIAIGVIIGRTSEFFDFFVYAIASVIVFPRLVFPFADELTQTLYSFGLFALAFIARPFG SVIFMAIDRRYGKSAKLIIALFLLGTSTVAIAFLPSYYTVGAGAIWLLALARIGQGLAWGGAWDGLASLLAMNAPEHQRG WYAMIPQLGAPLGLIVASTLFAFFVGHLSAADFFDWGWRYPFFVAFAINVVALFARLRMVVTPEYDELFQSRELQPASVA NTIRHEGRNIVIGAFAPLASFALFHMVTVFPLSWVFLFTKETPARFLIIEAVGAVFGVIAIVASGMLADRIGRKSLLIGS AIAIAVFSGFAPQLLDAGPVGETIYMVLGFILLGLSFGQSSGAIAANFARTYRYTASALTADLAWLFGAGFAPLAALLLA SYFGLLSAGGYLLSGAVCTLLALWLSAPRQLEQT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1789941, Length=432, Percent_Identity=35.4166666666667, Blast_Score=196, Evalue=3e-51, Organism=Escherichia coli, GI1788292, Length=435, Percent_Identity=28.2758620689655, Blast_Score=141, Evalue=8e-35, Organism=Escherichia coli, GI1790550, Length=411, Percent_Identity=27.4939172749392, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI1788942, Length=303, Percent_Identity=29.7029702970297, Blast_Score=99, Evalue=8e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 46789; Mature: 46658
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQAAAMDGETDLSRRHEANPGEIAIGVIIGRTSEFFDFFVYAIASVIVFPRLVFPFADE CCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LTQTLYSFGLFALAFIARPFGSVIFMAIDRRYGKSAKLIIALFLLGTSTVAIAFLPSYYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VGAGAIWLLALARIGQGLAWGGAWDGLASLLAMNAPEHQRGWYAMIPQLGAPLGLIVAST HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHCCHHHCCHHHCCCHHHHHHHH LFAFFVGHLSAADFFDWGWRYPFFVAFAINVVALFARLRMVVTPEYDELFQSRELQPASV HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHH ANTIRHEGRNIVIGAFAPLASFALFHMVTVFPLSWVFLFTKETPARFLIIEAVGAVFGVI HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHH AIVASGMLADRIGRKSLLIGSAIAIAVFSGFAPQLLDAGPVGETIYMVLGFILLGLSFGQ HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCC SSGAIAANFARTYRYTASALTADLAWLFGAGFAPLAALLLASYFGLLSAGGYLLSGAVCT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LLALWLSAPRQLEQT HHHHHHHCCHHHCCC >Mature Secondary Structure TQAAAMDGETDLSRRHEANPGEIAIGVIIGRTSEFFDFFVYAIASVIVFPRLVFPFADE CCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH LTQTLYSFGLFALAFIARPFGSVIFMAIDRRYGKSAKLIIALFLLGTSTVAIAFLPSYYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VGAGAIWLLALARIGQGLAWGGAWDGLASLLAMNAPEHQRGWYAMIPQLGAPLGLIVAST HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHCCHHHCCHHHCCCHHHHHHHH LFAFFVGHLSAADFFDWGWRYPFFVAFAINVVALFARLRMVVTPEYDELFQSRELQPASV HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHH ANTIRHEGRNIVIGAFAPLASFALFHMVTVFPLSWVFLFTKETPARFLIIEAVGAVFGVI HHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHH AIVASGMLADRIGRKSLLIGSAIAIAVFSGFAPQLLDAGPVGETIYMVLGFILLGLSFGQ HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCC SSGAIAANFARTYRYTASALTADLAWLFGAGFAPLAALLLASYFGLLSAGGYLLSGAVCT CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LLALWLSAPRQLEQT HHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]