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The map label for this gene is yfdC [H]

Identifier: 146338769

GI number: 146338769

Start: 1818502

End: 1819362

Strand: Reverse

Name: yfdC [H]

Synonym: BRADO1703

Alternate gene names: 146338769

Gene position: 1819362-1818502 (Counterclockwise)

Preceding gene: 146338770

Following gene: 146338761

Centisome position: 24.4

GC content: 64.58

Gene sequence:

>861_bases
GTGAGCAGCAAGGCCACCGCGCCGACATTCAGCCCCGCCGCTGACATCGAGGGCGTTTCCGACCAGCAGCGGCGCGAAAT
CCAGGCGCAGAGCCGGCCCAACGCCGCGCTGATTCACGAGACCATTCGCGCCGAAGGCGAGAGCGAACTTGAGCGGCGCT
GGTGGGCGATCCTGCTGTCGGGTTTCGCCGCAGGCCTCTCCATCAGCCTGTCGTTGATCGTGCAGGGCGAATTCCACGCC
TTCGTATCCGACGAGGCGGCACGACGCCTGTTCGCGCCGCTCGGCTATACCGCAGGCTTCCTGGTGGTGGTACTCGGCCG
GCAGCAGCTCTTCACCGAGAATACGCTGACGCCGATCCTGCCCCTGCTGCATCATCGCGACTTGAGGACTCTCGGCAATG
TCGCTCGGCTATGGAGCCTCGTGTTGATTGCAAACGTCGCGGGGACTTGGGCCGCGGCGGCGGCGCTGGTCCATACCGAT
GTGTTCGAGCCGCGCATCATCGACGCCTTCGCCGAGATCAGCCGCCACACCGTCGAGGGGCCGTTCTTGACGACATTCAT
GCGTGCGATCTTTGCAGGCTGGCTGATCGCGCTGATGGCCTGGCTGTTGCCTGCCGTCCGCGGCGCCCGCGCCCATATCG
TGATCATCATGACCTATCTGGTCGCGCTGGGACAATTCGCGCACATCGTTGCCGGGTCGGTCGAATGTGCCTTCCTGGTG
ATGAAGGGCCAGGCCTCGCTCGGCGACTACGCCGGAGCCTTCTTCCTCCCCACGCTGCTTGGTAATGTCGTTGGAGGCAC
GACGCTGGTCGCGCTGCTCAACTATGGACAGGTTGCAGCCGAGCTCGATCAGGAGTCCTGA

Upstream 100 bases:

>100_bases
CAGGAACTTTGCCGGCCGCTTGCACGTTCAGGCCGCAGAGAGAGCCCGGCTCTTTTGTCAGCGTCGGCAACCGCCCGCGC
CAGCCGACGGATCACCCGAC

Downstream 100 bases:

>100_bases
GGCGCGGAGCGTCAGGCTGCGGGCAGAGTGAACGAGAACGTCGCGCCGCCTTCTGACTCGTTGCTGGCAGCGAGTTCGCC
ACCATGCTCGCGTACGATTC

Product: putative transport protein, yfdC-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSSKATAPTFSPAADIEGVSDQQRREIQAQSRPNAALIHETIRAEGESELERRWWAILLSGFAAGLSISLSLIVQGEFHA
FVSDEAARRLFAPLGYTAGFLVVVLGRQQLFTENTLTPILPLLHHRDLRTLGNVARLWSLVLIANVAGTWAAAAALVHTD
VFEPRIIDAFAEISRHTVEGPFLTTFMRAIFAGWLIALMAWLLPAVRGARAHIVIIMTYLVALGQFAHIVAGSVECAFLV
MKGQASLGDYAGAFFLPTLLGNVVGGTTLVALLNYGQVAAELDQES

Sequences:

>Translated_286_residues
MSSKATAPTFSPAADIEGVSDQQRREIQAQSRPNAALIHETIRAEGESELERRWWAILLSGFAAGLSISLSLIVQGEFHA
FVSDEAARRLFAPLGYTAGFLVVVLGRQQLFTENTLTPILPLLHHRDLRTLGNVARLWSLVLIANVAGTWAAAAALVHTD
VFEPRIIDAFAEISRHTVEGPFLTTFMRAIFAGWLIALMAWLLPAVRGARAHIVIIMTYLVALGQFAHIVAGSVECAFLV
MKGQASLGDYAGAFFLPTLLGNVVGGTTLVALLNYGQVAAELDQES
>Mature_285_residues
SSKATAPTFSPAADIEGVSDQQRREIQAQSRPNAALIHETIRAEGESELERRWWAILLSGFAAGLSISLSLIVQGEFHAF
VSDEAARRLFAPLGYTAGFLVVVLGRQQLFTENTLTPILPLLHHRDLRTLGNVARLWSLVLIANVAGTWAAAAALVHTDV
FEPRIIDAFAEISRHTVEGPFLTTFMRAIFAGWLIALMAWLLPAVRGARAHIVIIMTYLVALGQFAHIVAGSVECAFLVM
KGQASLGDYAGAFFLPTLLGNVVGGTTLVALLNYGQVAAELDQES

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=264, Percent_Identity=40.9090909090909, Blast_Score=204, Evalue=8e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 30904; Mature: 30773

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKATAPTFSPAADIEGVSDQQRREIQAQSRPNAALIHETIRAEGESELERRWWAILLS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
GFAAGLSISLSLIVQGEFHAFVSDEAARRLFAPLGYTAGFLVVVLGRQQLFTENTLTPIL
HHHHHHHEEEEEEEECCHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH
PLLHHRDLRTLGNVARLWSLVLIANVAGTWAAAAALVHTDVFEPRIIDAFAEISRHTVEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
PFLTTFMRAIFAGWLIALMAWLLPAVRGARAHIVIIMTYLVALGQFAHIVAGSVECAFLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
MKGQASLGDYAGAFFLPTLLGNVVGGTTLVALLNYGQVAAELDQES
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSKATAPTFSPAADIEGVSDQQRREIQAQSRPNAALIHETIRAEGESELERRWWAILLS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
GFAAGLSISLSLIVQGEFHAFVSDEAARRLFAPLGYTAGFLVVVLGRQQLFTENTLTPIL
HHHHHHHEEEEEEEECCHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHH
PLLHHRDLRTLGNVARLWSLVLIANVAGTWAAAAALVHTDVFEPRIIDAFAEISRHTVEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
PFLTTFMRAIFAGWLIALMAWLLPAVRGARAHIVIIMTYLVALGQFAHIVAGSVECAFLV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
MKGQASLGDYAGAFFLPTLLGNVVGGTTLVALLNYGQVAAELDQES
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]