Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is 146338585
Identifier: 146338585
GI number: 146338585
Start: 1615206
End: 1617431
Strand: Reverse
Name: 146338585
Synonym: BRADO1509
Alternate gene names: NA
Gene position: 1617431-1615206 (Counterclockwise)
Preceding gene: 146338587
Following gene: 146338583
Centisome position: 21.69
GC content: 67.88
Gene sequence:
>2226_bases TTGAGCACCGTCGGTTCGCGCGCCTTCCAGAAGGCACGGCAGGAAAAGAAGCAGAAGAAGCTGATCGAGACGCAGCTGAC GGTGGCATTCAGGGCCTTCCAGGCGGGACGCCAGGCGGAAGCGCAGGCGCAATGCGCGAAGCTGCTGCAGGAAGTGCCGG ACTGTTTCGACGCCATGCACCTGCTCGGCGTGTCCCTGGTGTCATCCGCCCGCTTCGCCGAGGCGGCGACCTTCCTGGCG CAGGCCGTGGCGCTCGAGCCGAACTCGGCGGACGCGCATTCCAATCTCGGCTGGGCGCTGGTGAATTGCGAACGCTACGA GGAGGCGCGCGCGTCGCTGGAGCGATCGCTGGCGCTGCGGCCCAACGCGCCGATCACGCTGCGCAACCTGACGATCGCCC TGCTGCGGCTCAAGAAGGGCGAGGCGGCTCTGGCGAACGCAGTGCGGGCGCTGGAGCTGAAGCCGGATGACGTCGACTCC TGGAGCAACCGTGCCGTCGCCGAATTGATGCTGCGGCACTGGGACGCCGCGGCGGCCAGCGCCGAGCAAGCGCTGACGTT CAACCCGACCCATTTCGAGGCCATGGTCAACAAGGGTCTCGCCCATCTCGAGCTGCATCATTTCGAGCTCGCGGAGGCGA TCTTCAACGCAGCTCTCGCCGCGCGGCCGATGCATGCCGAACTGCTGGCGCATCGCGGCCGGCTCTACATGCTGTCGGGA CACACCGACGCCGCGGAGGCCGATTTCGATGCCGCCGTGCGGCTGGATCCGCAGCTGCAACTGGGATGGCAGGGCAAGGC GCAGATCTCGATTCTCAAGGGCAACATCGCCGCGGCCATGGCGGCCTGCCGGCGCGTGCTCGACGCCAACCCCGCCGCCC AGACCGCCCTCACTCTGCTCGGCGCCTGCCTCGGCCGTCTCGGCGACGTCGCCGGTGCGGTCGCGCGATTCGATCAGGCG CTGGCCGTACAGCCGGACTATGACGAGGCGATCACCAAGAAGATCTTCTATCTCGACTTCCTCTCCGGCGCCGATTTCGC CGTGCAGCAGGCGACGCGGAAATATTGGTGGGTGGCGGTCGGCTCCAAATTCCCGCGCCGCACGCTCGCGCCGCGCTCGC TCGATCCCAACCGGCGCATCGTGGTCGGCTACGTCTCGGCCGATTTCCGCATGCACTCGGCGGCCTTCGCCTTCCTGCCG GTGCTGCGCGGGCACGACAAGTCGCAGCTGCAGGTCAACTGTTACTCGGCCTCGCCGCGGCACGACGATTTCACCGCGCA GTTCAAGGCGATCGCCGACGTCTGGGTCGAGGCCGCCAACCTCTCCGACGACGAGCTCGCCGACCGCATCCAGGCCGACG GCGTCGACATCCTCGTCGATCTCTCCGGCTACACCACCGGCACCCGCATGCCGGTGTTCGCGCGCAAGCCGGCGCCGATC CAGGTCACGGCCTGGGGCAGCGGCACCGGCACGGGCCTCGAGACGATGGACTACTTTTTCGCCGATCCGGTCACGGTGCC GGAGAACGTCCGGCCGCTGTTCGCCGAGCACGTCCACGATCTGCCCTCGGTGATCACGATCGATCCGCTGCTCGACATCC GGCCCTCGCCGCTGCCGATGCTGCAGAACGGCCATGTCACCTTCGGTGTCTACAACCGCATCGACAAGATTTCCGACGAG GCGATCGCGCTGTGGGCCCGGCTGCTGGCCGAGGTGCCGGATGCCGATCTCGTCATCAAGCATCTCGCGCTCAACGATCC CATGGTGCGCGACGGGTTGATCAGCCGCTTCGTCAGCCGCGGGGTGCCGGAGGCGCGCCTGGTCTGCCTCGGTGCCAGCG AGCGCAGCGAGCATCTGCGCTCGTATGACCGCATCGACATCTCGCTGGATCCGTTCCCGCAGAATGGCGGCATCTCGACG TTCGAGTCGCTGTATATGGGCGTGCCGGTGGTGGCGAAGCTCGGCCTCGGCGCGGCCTCGCGCGCGGCCGGCGGCATTCT CACCGCGGCCGGACTGCCCGACTGGGTCGCCGCTGATGATGACGGCTACATCCGCATCGCCAAGACCTTCGCTGCCCAGC CGGAGCTGCTGGCGAAGCTGCGCGCCGAACTGCCCGGCATGGTCGCACGCTCGCCGGCCGGCGACGTCGCCAACTACACG CGCTGCGTCGAGGCAGGCTATCGGCAGTTCTGGCAGACCTATTGCGCGACAGGGGGTAAACGCTGA
Upstream 100 bases:
>100_bases GCCGACGGGCATGGCGGCGGCCCCGGCGACGGCGCGAAGCGCAGGCGACGGCGGCCGTTCGGCCGCAACGCTTGTCCTGC CCGTCCGGAGACATGATCCC
Downstream 100 bases:
>100_bases TCGCGTTGGGCCAAATCGTATCGGCGCATGAGCGAGGACGAGACCAAGGCGCTGTTCGAGCCGTTCCGCGACTGGATGAA ACGGGAGGGCGGCCAGCCAG
Product: O-linked N-acetylglucosamine transferase
Products: NA
Alternate protein names: O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Tetratricopeptide Repeat Family; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; TPR Repeat Protein; Tetratricopeptide Repeat Domain Protein; TPR Domain Protein; Methyltransferase Type; Tetratricopeptide Repeat-Containing Protein; SPY Protein; Glycosyltransferase TPR Domain Protein; Glycosyl Transferase Family Protein; FkbM Family Methyltransferase; Tpr Repeat-Containing Protein; Porphyrin Biosynthesis Protein; Transferase; Tetratricopeptide Repeat Family Protein; SEC-C Motif Domain Protein; Sulfotransferase; TPR Domain/SEC-C Motif Domain Protein; TPR Repeat; O-Linked N-Acetylglucosamine TransferaNDLY Family; Tetratricopeptide Repeat Protein; O-Linked Acetylglucosamine Transferase; Methyltransferase Regulatory Domain; Tetratricopeptide Domain Protein; TPR Repeat Domain-Containing Protein; TPR Repeat-Containing Glycosyl Transferase; O-Linked GLCNAC Transferase; Glycosyl Transferase TPR Repeat Protein; Glycosyl Transferase
Number of amino acids: Translated: 741; Mature: 740
Protein sequence:
>741_residues MSTVGSRAFQKARQEKKQKKLIETQLTVAFRAFQAGRQAEAQAQCAKLLQEVPDCFDAMHLLGVSLVSSARFAEAATFLA QAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKKGEAALANAVRALELKPDDVDS WSNRAVAELMLRHWDAAAASAEQALTFNPTHFEAMVNKGLAHLELHHFELAEAIFNAALAARPMHAELLAHRGRLYMLSG HTDAAEADFDAAVRLDPQLQLGWQGKAQISILKGNIAAAMAACRRVLDANPAAQTALTLLGACLGRLGDVAGAVARFDQA LAVQPDYDEAITKKIFYLDFLSGADFAVQQATRKYWWVAVGSKFPRRTLAPRSLDPNRRIVVGYVSADFRMHSAAFAFLP VLRGHDKSQLQVNCYSASPRHDDFTAQFKAIADVWVEAANLSDDELADRIQADGVDILVDLSGYTTGTRMPVFARKPAPI QVTAWGSGTGTGLETMDYFFADPVTVPENVRPLFAEHVHDLPSVITIDPLLDIRPSPLPMLQNGHVTFGVYNRIDKISDE AIALWARLLAEVPDADLVIKHLALNDPMVRDGLISRFVSRGVPEARLVCLGASERSEHLRSYDRIDISLDPFPQNGGIST FESLYMGVPVVAKLGLGAASRAAGGILTAAGLPDWVAADDDGYIRIAKTFAAQPELLAKLRAELPGMVARSPAGDVANYT RCVEAGYRQFWQTYCATGGKR
Sequences:
>Translated_741_residues MSTVGSRAFQKARQEKKQKKLIETQLTVAFRAFQAGRQAEAQAQCAKLLQEVPDCFDAMHLLGVSLVSSARFAEAATFLA QAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKKGEAALANAVRALELKPDDVDS WSNRAVAELMLRHWDAAAASAEQALTFNPTHFEAMVNKGLAHLELHHFELAEAIFNAALAARPMHAELLAHRGRLYMLSG HTDAAEADFDAAVRLDPQLQLGWQGKAQISILKGNIAAAMAACRRVLDANPAAQTALTLLGACLGRLGDVAGAVARFDQA LAVQPDYDEAITKKIFYLDFLSGADFAVQQATRKYWWVAVGSKFPRRTLAPRSLDPNRRIVVGYVSADFRMHSAAFAFLP VLRGHDKSQLQVNCYSASPRHDDFTAQFKAIADVWVEAANLSDDELADRIQADGVDILVDLSGYTTGTRMPVFARKPAPI QVTAWGSGTGTGLETMDYFFADPVTVPENVRPLFAEHVHDLPSVITIDPLLDIRPSPLPMLQNGHVTFGVYNRIDKISDE AIALWARLLAEVPDADLVIKHLALNDPMVRDGLISRFVSRGVPEARLVCLGASERSEHLRSYDRIDISLDPFPQNGGIST FESLYMGVPVVAKLGLGAASRAAGGILTAAGLPDWVAADDDGYIRIAKTFAAQPELLAKLRAELPGMVARSPAGDVANYT RCVEAGYRQFWQTYCATGGKR >Mature_740_residues STVGSRAFQKARQEKKQKKLIETQLTVAFRAFQAGRQAEAQAQCAKLLQEVPDCFDAMHLLGVSLVSSARFAEAATFLAQ AVALEPNSADAHSNLGWALVNCERYEEARASLERSLALRPNAPITLRNLTIALLRLKKGEAALANAVRALELKPDDVDSW SNRAVAELMLRHWDAAAASAEQALTFNPTHFEAMVNKGLAHLELHHFELAEAIFNAALAARPMHAELLAHRGRLYMLSGH TDAAEADFDAAVRLDPQLQLGWQGKAQISILKGNIAAAMAACRRVLDANPAAQTALTLLGACLGRLGDVAGAVARFDQAL AVQPDYDEAITKKIFYLDFLSGADFAVQQATRKYWWVAVGSKFPRRTLAPRSLDPNRRIVVGYVSADFRMHSAAFAFLPV LRGHDKSQLQVNCYSASPRHDDFTAQFKAIADVWVEAANLSDDELADRIQADGVDILVDLSGYTTGTRMPVFARKPAPIQ VTAWGSGTGTGLETMDYFFADPVTVPENVRPLFAEHVHDLPSVITIDPLLDIRPSPLPMLQNGHVTFGVYNRIDKISDEA IALWARLLAEVPDADLVIKHLALNDPMVRDGLISRFVSRGVPEARLVCLGASERSEHLRSYDRIDISLDPFPQNGGISTF ESLYMGVPVVAKLGLGAASRAAGGILTAAGLPDWVAADDDGYIRIAKTFAAQPELLAKLRAELPGMVARSPAGDVANYTR CVEAGYRQFWQTYCATGGKR
Specific function: Unknown
COG id: COG3914
COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307150, Length=626, Percent_Identity=25.0798722044728, Blast_Score=144, Evalue=4e-34, Organism=Homo sapiens, GI32307148, Length=626, Percent_Identity=25.0798722044728, Blast_Score=143, Evalue=5e-34, Organism=Homo sapiens, GI301336134, Length=305, Percent_Identity=25.9016393442623, Blast_Score=70, Evalue=9e-12, Organism=Homo sapiens, GI83415184, Length=305, Percent_Identity=25.9016393442623, Blast_Score=69, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115532690, Length=542, Percent_Identity=25.0922509225092, Blast_Score=138, Evalue=1e-32, Organism=Caenorhabditis elegans, GI115532692, Length=542, Percent_Identity=25.0922509225092, Blast_Score=138, Evalue=1e-32, Organism=Caenorhabditis elegans, GI25147174, Length=206, Percent_Identity=29.6116504854369, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI17647755, Length=536, Percent_Identity=24.8134328358209, Blast_Score=140, Evalue=2e-33, Organism=Drosophila melanogaster, GI24585827, Length=536, Percent_Identity=24.8134328358209, Blast_Score=140, Evalue=2e-33, Organism=Drosophila melanogaster, GI24585829, Length=536, Percent_Identity=24.8134328358209, Blast_Score=140, Evalue=2e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80681; Mature: 80550
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTVGSRAFQKARQEKKQKKLIETQLTVAFRAFQAGRQAEAQAQCAKLLQEVPDCFDAMH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LLGVSLVSSARFAEAATFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHEEEC PNAPITLRNLTIALLRLKKGEAALANAVRALELKPDDVDSWSNRAVAELMLRHWDAAAAS CCCCEEEHHHHEEEHHCCCCCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHC AEQALTFNPTHFEAMVNKGLAHLELHHFELAEAIFNAALAARPMHAELLAHRGRLYMLSG CCCCEEECCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEC HTDAAEADFDAAVRLDPQLQLGWQGKAQISILKGNIAAAMAACRRVLDANPAAQTALTLL CCCCCCCCCCCEEEECCCEEECCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHH GACLGRLGDVAGAVARFDQALAVQPDYDEAITKKIFYLDFLSGADFAVQQATRKYWWVAV HHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHEEEEEE GSKFPRRTLAPRSLDPNRRIVVGYVSADFRMHSAAFAFLPVLRGHDKSQLQVNCYSASPR CCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC HDDFTAQFKAIADVWVEAANLSDDELADRIQADGVDILVDLSGYTTGTRMPVFARKPAPI CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCCE QVTAWGSGTGTGLETMDYFFADPVTVPENVRPLFAEHVHDLPSVITIDPLLDIRPSPLPM EEEECCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHCCCCCCCCC LQNGHVTFGVYNRIDKISDEAIALWARLLAEVPDADLVIKHLALNDPMVRDGLISRFVSR CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHC GVPEARLVCLGASERSEHLRSYDRIDISLDPFPQNGGISTFESLYMGVPVVAKLGLGAAS CCCCCEEEEECCCHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHCCHHHHHHCCCCHH RAAGGILTAAGLPDWVAADDDGYIRIAKTFAAQPELLAKLRAELPGMVARSPAGDVANYT HHCCCEEEECCCCCCEECCCCCEEEEEHHHCCCHHHHHHHHHHCCCCEECCCCCCHHHHH RCVEAGYRQFWQTYCATGGKR HHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure STVGSRAFQKARQEKKQKKLIETQLTVAFRAFQAGRQAEAQAQCAKLLQEVPDCFDAMH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LLGVSLVSSARFAEAATFLAQAVALEPNSADAHSNLGWALVNCERYEEARASLERSLALR HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHEEEC PNAPITLRNLTIALLRLKKGEAALANAVRALELKPDDVDSWSNRAVAELMLRHWDAAAAS CCCCEEEHHHHEEEHHCCCCCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHC AEQALTFNPTHFEAMVNKGLAHLELHHFELAEAIFNAALAARPMHAELLAHRGRLYMLSG CCCCEEECCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEC HTDAAEADFDAAVRLDPQLQLGWQGKAQISILKGNIAAAMAACRRVLDANPAAQTALTLL CCCCCCCCCCCEEEECCCEEECCCCCEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHH GACLGRLGDVAGAVARFDQALAVQPDYDEAITKKIFYLDFLSGADFAVQQATRKYWWVAV HHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHEEEEEE GSKFPRRTLAPRSLDPNRRIVVGYVSADFRMHSAAFAFLPVLRGHDKSQLQVNCYSASPR CCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC HDDFTAQFKAIADVWVEAANLSDDELADRIQADGVDILVDLSGYTTGTRMPVFARKPAPI CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCCE QVTAWGSGTGTGLETMDYFFADPVTVPENVRPLFAEHVHDLPSVITIDPLLDIRPSPLPM EEEECCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHCCCCCCCCC LQNGHVTFGVYNRIDKISDEAIALWARLLAEVPDADLVIKHLALNDPMVRDGLISRFVSR CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHC GVPEARLVCLGASERSEHLRSYDRIDISLDPFPQNGGISTFESLYMGVPVVAKLGLGAAS CCCCCEEEEECCCHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHCCHHHHHHCCCCHH RAAGGILTAAGLPDWVAADDDGYIRIAKTFAAQPELLAKLRAELPGMVARSPAGDVANYT HHCCCEEEECCCCCCEECCCCCEEEEEHHHCCCHHHHHHHHHHCCCCEECCCCCCHHHHH RCVEAGYRQFWQTYCATGGKR HHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA