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The map label for this gene is cspA [C]

Identifier: 146338511

GI number: 146338511

Start: 1528318

End: 1528518

Strand: Reverse

Name: cspA [C]

Synonym: BRADO1429

Alternate gene names: 146338511

Gene position: 1528518-1528318 (Counterclockwise)

Preceding gene: 146338512

Following gene: 146338510

Centisome position: 20.5

GC content: 57.71

Gene sequence:

>201_bases
ATGGCTAAAGGTACGGTCAAGTGGTTCAACCCGACCAAGGGCTACGGCTTCATTCAGCCGGCGGCCGGGGGCAAAGACAT
TTTCGTCCATATTTCTGCAGTTCAGAAGGCCGGGCTCGCGACCCTCAACGAGGGTCAGACGATCGAATACGAGGAGATCG
CCAATCGCGGCAGAAGCTCCGCCGAGAACCTGAAGGTGTAG

Upstream 100 bases:

>100_bases
GCTATCAAGCCTGCCGCAACCGCAGTATTCTCATTTTCCGGGGCCGCATGGTTTGCGGGGACCTAAGGCCCGAACTGGAT
TGATCCCGCGGAGGCAACGT

Downstream 100 bases:

>100_bases
CCAACGCCGTTCCGCGCCATTCCGCCTCGCGGCTTTTCGGCGTTCATCGTTTCGCTCACCGGGCCAGCGAGACACGAGGC
ACCAAGATTTCAAACAGGAG

Product: DNA binding cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MAKGTVKWFNPTKGYGFIQPAAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIANRGRSSAENLKV

Sequences:

>Translated_66_residues
MAKGTVKWFNPTKGYGFIQPAAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIANRGRSSAENLKV
>Mature_65_residues
AKGTVKWFNPTKGYGFIQPAAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIANRGRSSAENLKV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=49, Percent_Identity=63.265306122449, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1786841, Length=49, Percent_Identity=61.2244897959184, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787107, Length=51, Percent_Identity=54.9019607843137, Blast_Score=66, Evalue=4e-13,
Organism=Escherichia coli, GI1787834, Length=47, Percent_Identity=57.4468085106383, Blast_Score=65, Evalue=6e-13,
Organism=Escherichia coli, GI2367114, Length=59, Percent_Identity=50.8474576271186, Blast_Score=65, Evalue=8e-13,
Organism=Escherichia coli, GI1789979, Length=47, Percent_Identity=55.3191489361702, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787839, Length=48, Percent_Identity=54.1666666666667, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7110; Mature: 6979

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGTVKWFNPTKGYGFIQPAAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIANRGRSS
CCCCCEEECCCCCCCEEEECCCCCCEEEEEEECCCCCCCEECCCCCEECHHHHHCCCCCC
AENLKV
CCCCCC
>Mature Secondary Structure 
AKGTVKWFNPTKGYGFIQPAAGGKDIFVHISAVQKAGLATLNEGQTIEYEEIANRGRSS
CCCCEEECCCCCCCEEEECCCCCCEEEEEEECCCCCCCEECCCCCEECHHHHHCCCCCC
AENLKV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]