Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
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Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is 146337821
Identifier: 146337821
GI number: 146337821
Start: 740116
End: 741117
Strand: Direct
Name: 146337821
Synonym: BRADO0702
Alternate gene names: NA
Gene position: 740116-741117 (Clockwise)
Preceding gene: 146337814
Following gene: 146337822
Centisome position: 9.93
GC content: 62.67
Gene sequence:
>1002_bases ATGGCGGCATGGCTGGTCATCGGCGGGGCCCTGGGCGGGACGGTTGCGGCTGCGCAGGCCCAGACCCTCGACAAGGTCTC GTTCGGCACCAATTGGGTGGCCGAGGCCGAGCATGGCGGCTTCTTCCAGGCGGTCGCCGACGGCACCTACAAGCGCTACG GGCTGGACGTGACGATCGTGCCGGGCGGCCCGAACGAGAACAACCGGATGCTGCTGATTTCCGGCAAGATCGAGTTCTTC ATGGCCGCCAACACGCTGATGGCGTTCGACGCGGTCGCCAACAACGTGCCGGTGGTGTCGATCGCGGCGATGTTCCAGAA GGATCCGCAGGTGTTCCTGACGCACCCGGAGTCCAAGGTCACCAAGCTCGAGGAGCTGAAGCCGCTGACCCTGTTCGTCT CGAAGGAAGGCGTCTCCAGCTACTATCAATGGCTGAAGTCGGAATACGGCTTCTCCGAGAAGAACGTCCGTCCCTACACC TTCAATCCGCAGCCCTTCATCGCCACGCCGCAGAGCGCGATGCAAGGCTATGTCACGTCCGAGCCGTTCGCGGTCGAGCG CGCCGCCGGCTTCAAGCCCGGCGTGATCCTGCTCGCCGACAACGGCTTCAACACCTACTCGACCCTGATCGAGACGCGGC GTGACCTGGTCGAGAGCAAGCCGGACCTGGTGCAGCGCTTCGTCGATGCCTCGATCATCGGCTGGTACACCTACATCTAT GGCGACAATTCCGCCGGCAATGCGCTGATCAAGAAGATGAACCCGGAAATGACCGACGATCTGCTGGCCTATTCCGTCGC CAAGATGAAGGAATTCGGCATCGTCGATTCCGGCGACAGCGTCACCAAGGGCATCGGCGCGATGACGGATGAGCGCATCA CCAGCTTCTTCGACAAGATGGTGCGCGCCGGCGTCGTCAAGCCGACCATCGACTATCGCAAGTCCTACACGCTGCGCTTC GTCAACAAGGGCGTCGGCGTCGATCTCCGGCCGAAGCAGTAG
Upstream 100 bases:
>100_bases CCGTCGGGCAGGGTAGTTATCACCAGACGATCTTAACATGTTCAGCCAGAAAGAATCGGGGAGACTAGAGATGAGGCAAT CGCTTCTGTCGCGAACGTTA
Downstream 100 bases:
>100_bases GCCGCGTGAGCGCACCCTCCCGCAGATGAGCTCGGTCCCTCCGTCCGCGCGCGCCGACGGCGGCGCGGTGCGCCTGCGCG GCGTCACCAAGGTCTACGAT
Product: ABC transporter periplasmic-binding protein
Products: NA
Alternate protein names: NMT1/THI5 Like Domain Protein; Diguanylate Cyclase; Histidine Kinase; NMT1/THI5 Like Domain-Containing Protein; NMT1/THI5 Like Family; Permease Protein Of ABC Transporter; Secreted Protein; GGDEF Domain-Containing Protein; Twin-Arginine Translocation Pathway Signal; Nitrate/Sulfonate/Bicarbonate ABC Transporter; PAS Sensor Protein; ABC Transporter Periplasmic Components; Nitrate/Sulfonate/Bicarbonate ABC Transporter Permease; Diguanylate Cyclase With PAS/PAC Sensor; ABC Transporter Permease; PAS/PAC Sensor Signal Transduction Histidine Kinase; Two-Component Sensor Histidine Kinase; Diguanylate Cyclase With Extracellular Sensor; PasGgdef; PAS/PAC Sensor Hybrid Histidine Kinase; Two Domain Sensory Box Histidine Kinase; PAS/PAC Sensor-Containg Diguanylate Cyclase; NMT1/THI5-Ike Domain-Containing Protein; Membrane Lipoprotein Lipid Attachment Site; PAS/PAC Sensor-Containing Diguanylate Cyclase; Lipoprotein; Exported Protein; Multi-Sensor Signal Transduction Histidine Kinase
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MAAWLVIGGALGGTVAAAQAQTLDKVSFGTNWVAEAEHGGFFQAVADGTYKRYGLDVTIVPGGPNENNRMLLISGKIEFF MAANTLMAFDAVANNVPVVSIAAMFQKDPQVFLTHPESKVTKLEELKPLTLFVSKEGVSSYYQWLKSEYGFSEKNVRPYT FNPQPFIATPQSAMQGYVTSEPFAVERAAGFKPGVILLADNGFNTYSTLIETRRDLVESKPDLVQRFVDASIIGWYTYIY GDNSAGNALIKKMNPEMTDDLLAYSVAKMKEFGIVDSGDSVTKGIGAMTDERITSFFDKMVRAGVVKPTIDYRKSYTLRF VNKGVGVDLRPKQ
Sequences:
>Translated_333_residues MAAWLVIGGALGGTVAAAQAQTLDKVSFGTNWVAEAEHGGFFQAVADGTYKRYGLDVTIVPGGPNENNRMLLISGKIEFF MAANTLMAFDAVANNVPVVSIAAMFQKDPQVFLTHPESKVTKLEELKPLTLFVSKEGVSSYYQWLKSEYGFSEKNVRPYT FNPQPFIATPQSAMQGYVTSEPFAVERAAGFKPGVILLADNGFNTYSTLIETRRDLVESKPDLVQRFVDASIIGWYTYIY GDNSAGNALIKKMNPEMTDDLLAYSVAKMKEFGIVDSGDSVTKGIGAMTDERITSFFDKMVRAGVVKPTIDYRKSYTLRF VNKGVGVDLRPKQ >Mature_332_residues AAWLVIGGALGGTVAAAQAQTLDKVSFGTNWVAEAEHGGFFQAVADGTYKRYGLDVTIVPGGPNENNRMLLISGKIEFFM AANTLMAFDAVANNVPVVSIAAMFQKDPQVFLTHPESKVTKLEELKPLTLFVSKEGVSSYYQWLKSEYGFSEKNVRPYTF NPQPFIATPQSAMQGYVTSEPFAVERAAGFKPGVILLADNGFNTYSTLIETRRDLVESKPDLVQRFVDASIIGWYTYIYG DNSAGNALIKKMNPEMTDDLLAYSVAKMKEFGIVDSGDSVTKGIGAMTDERITSFFDKMVRAGVVKPTIDYRKSYTLRFV NKGVGVDLRPKQ
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36597; Mature: 36466
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAWLVIGGALGGTVAAAQAQTLDKVSFGTNWVAEAEHGGFFQAVADGTYKRYGLDVTIV CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHCCCEEEECCEEEEE PGGPNENNRMLLISGKIEFFMAANTLMAFDAVANNVPVVSIAAMFQKDPQVFLTHPESKV CCCCCCCCEEEEEECCEEEEEEHHHHHHHHHHHCCCCCEEEEHHHCCCCCEEEECCHHHH TKLEELKPLTLFVSKEGVSSYYQWLKSEYGFSEKNVRPYTFNPQPFIATPQSAMQGYVTS HHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCHHHHCCCCCC EPFAVERAAGFKPGVILLADNGFNTYSTLIETRRDLVESKPDLVQRFVDASIIGWYTYIY CCCEEHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEEE GDNSAGNALIKKMNPEMTDDLLAYSVAKMKEFGIVDSGDSVTKGIGAMTDERITSFFDKM ECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHH VRAGVVKPTIDYRKSYTLRFVNKGVGVDLRPKQ HHCCCCCCCHHHCCCEEEEEECCCCCEECCCCC >Mature Secondary Structure AAWLVIGGALGGTVAAAQAQTLDKVSFGTNWVAEAEHGGFFQAVADGTYKRYGLDVTIV EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHCCCEEEECCEEEEE PGGPNENNRMLLISGKIEFFMAANTLMAFDAVANNVPVVSIAAMFQKDPQVFLTHPESKV CCCCCCCCEEEEEECCEEEEEEHHHHHHHHHHHCCCCCEEEEHHHCCCCCEEEECCHHHH TKLEELKPLTLFVSKEGVSSYYQWLKSEYGFSEKNVRPYTFNPQPFIATPQSAMQGYVTS HHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCHHHHCCCCCC EPFAVERAAGFKPGVILLADNGFNTYSTLIETRRDLVESKPDLVQRFVDASIIGWYTYIY CCCEEHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEEE GDNSAGNALIKKMNPEMTDDLLAYSVAKMKEFGIVDSGDSVTKGIGAMTDERITSFFDKM ECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHH VRAGVVKPTIDYRKSYTLRFVNKGVGVDLRPKQ HHCCCCCCCHHHCCCEEEEEECCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA