Definition Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession NC_009445
Length 7,456,587

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The map label for this gene is gra-orf6 [H]

Identifier: 146337777

GI number: 146337777

Start: 679036

End: 679818

Strand: Direct

Name: gra-orf6 [H]

Synonym: BRADO0654

Alternate gene names: 146337777

Gene position: 679036-679818 (Clockwise)

Preceding gene: 146337773

Following gene: 146337781

Centisome position: 9.11

GC content: 68.45

Gene sequence:

>783_bases
ATGGCGGTGGAAGGTCTGTGCGCGATCGTGACGGGTTCGGCGTCCGGCCTGGGCGCCGCGACGGCGCAGCTGCTGGCCAA
GGCCGGCATGCGCATCGTCGTCAACTATTCGAACAGCAAAGCCGAAGCCGAGCAGACCGCCGATCTCTGCCGAAAGGAAG
GCGTCGAGGTGATCGTCGTGCAGGGGGACGTGTCCCGCGACGAGGATTGCAGGAAGATCGTCGCGGCGGCCGCTCCCTGG
GGGCGGCTCGACGTGCTGATCAACAATGCCGGCACCACCAAGCATGTGCCGCATGATCAGCTCGACGGCCTCTCGGCGGA
GGATTTTCAGCGCATCTTCGGCGTCAACACGATCGGACCATTCCAGATGATCCGCGCCGCGCGGCCGCTGCTCGAAGCCG
CCGCCCAGGCGGCCGCGCGCGCCTCGGCCGTCGTCAACGTCTCCTCAGTCGCGGGCATCAGCGGCATCGGCTCGTCGGTC
GCCTATGCGGCGAGCAAGGGCGCGCTCAACACGATGACCCTGTCGCTGTCGCGCGCGCTGGCGCCGTCGATCCGCGTCAA
CACCGTCTGCCCCGGCTATATCGACACGCCCTGGTTCACCAAGGGGCGCGGCGAAGCCGGTGCCAAGCAGGTCCGCGATG
CCGTCGTGGCCCGCGTGCCGCTGCGCACGGCGTCGACGGCCGAGGACATCGCGCAGCTCGTCGTCTTCCTGGCAAGCCCC
GCATCGGGCCAGATGACCGGTGAGGTCGTGCGCATGGATGCGGGGATGCATCTATTGGGCTGA

Upstream 100 bases:

>100_bases
TTCCGCAGCGCGGAGATTGCCTGGATTTTGCAGTCGCGCTGATCTTCGCTAAGAAGCAATCATCGGAGAACGACAAGCCG
GCAAACAGGGAGAAGGGTCA

Downstream 100 bases:

>100_bases
GACCGGCGTCGCTGCGATCAGGCGCTGACGCGGTCTACACGTTTTGCGTGGCCCTGGATTATTCGCTGCGCTCGCAATGA
CGGGGTGGGTTTGGTGAAAG

Product: putative short-chain dehydrogenase/reductase (SDR) family protein 3-oxoacyl-[acyl-carrier-protein] reductase

Products: NA

Alternate protein names: ORF6 [H]

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MAVEGLCAIVTGSASGLGAATAQLLAKAGMRIVVNYSNSKAEAEQTADLCRKEGVEVIVVQGDVSRDEDCRKIVAAAAPW
GRLDVLINNAGTTKHVPHDQLDGLSAEDFQRIFGVNTIGPFQMIRAARPLLEAAAQAAARASAVVNVSSVAGISGIGSSV
AYAASKGALNTMTLSLSRALAPSIRVNTVCPGYIDTPWFTKGRGEAGAKQVRDAVVARVPLRTASTAEDIAQLVVFLASP
ASGQMTGEVVRMDAGMHLLG

Sequences:

>Translated_260_residues
MAVEGLCAIVTGSASGLGAATAQLLAKAGMRIVVNYSNSKAEAEQTADLCRKEGVEVIVVQGDVSRDEDCRKIVAAAAPW
GRLDVLINNAGTTKHVPHDQLDGLSAEDFQRIFGVNTIGPFQMIRAARPLLEAAAQAAARASAVVNVSSVAGISGIGSSV
AYAASKGALNTMTLSLSRALAPSIRVNTVCPGYIDTPWFTKGRGEAGAKQVRDAVVARVPLRTASTAEDIAQLVVFLASP
ASGQMTGEVVRMDAGMHLLG
>Mature_259_residues
AVEGLCAIVTGSASGLGAATAQLLAKAGMRIVVNYSNSKAEAEQTADLCRKEGVEVIVVQGDVSRDEDCRKIVAAAAPWG
RLDVLINNAGTTKHVPHDQLDGLSAEDFQRIFGVNTIGPFQMIRAARPLLEAAAQAAARASAVVNVSSVAGISGIGSSVA
YAASKGALNTMTLSLSRALAPSIRVNTVCPGYIDTPWFTKGRGEAGAKQVRDAVVARVPLRTASTAEDIAQLVVFLASPA
SGQMTGEVVRMDAGMHLLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4758504, Length=268, Percent_Identity=32.8358208955224, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI83715985, Length=267, Percent_Identity=31.0861423220974, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI40254992, Length=265, Percent_Identity=29.4339622641509, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=30.5882352941176, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=31.9672131147541, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=25.9541984732824, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=31.4176245210728, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI59889578, Length=189, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI66933014, Length=180, Percent_Identity=31.6666666666667, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=28.8, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=34.1836734693878, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI210032110, Length=206, Percent_Identity=30.0970873786408, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI31542939, Length=201, Percent_Identity=25.8706467661692, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=27.5590551181102, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=35.8267716535433, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787335, Length=261, Percent_Identity=29.8850574712644, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=31.1284046692607, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788459, Length=254, Percent_Identity=31.1023622047244, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=28.4046692607004, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790717, Length=259, Percent_Identity=27.7992277992278, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787905, Length=260, Percent_Identity=24.6153846153846, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786812, Length=265, Percent_Identity=29.811320754717, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789208, Length=264, Percent_Identity=28.7878787878788, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=30.5343511450382, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367365, Length=258, Percent_Identity=27.906976744186, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787545, Length=262, Percent_Identity=26.3358778625954, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=206, Percent_Identity=36.8932038834951, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=31.8352059925094, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=260, Percent_Identity=31.5384615384615, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=32.1033210332103, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=34.6613545816733, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=29.368029739777, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=31.7829457364341, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=29.9242424242424, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=270, Percent_Identity=31.4814814814815, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=30.5882352941176, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=29.2592592592593, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=261, Percent_Identity=27.9693486590038, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=29.2592592592593, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=29.8507462686567, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=27.5590551181102, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=29.368029739777, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=27.7153558052434, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=30.188679245283, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=271, Percent_Identity=27.6752767527675, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=275, Percent_Identity=30.5454545454545, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=274, Percent_Identity=30.2919708029197, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=274, Percent_Identity=29.1970802919708, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=27.4436090225564, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=201, Percent_Identity=32.8358208955224, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=277, Percent_Identity=28.158844765343, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=27.1375464684015, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17559962, Length=206, Percent_Identity=32.5242718446602, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=204, Percent_Identity=30.3921568627451, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=202, Percent_Identity=30.6930693069307, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=237, Percent_Identity=27.0042194092827, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=31.4432989690722, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=263, Percent_Identity=24.3346007604563, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI17737361, Length=266, Percent_Identity=31.203007518797, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=32.0158102766798, Blast_Score=100, Evalue=7e-22,
Organism=Drosophila melanogaster, GI23397609, Length=264, Percent_Identity=31.8181818181818, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=33.201581027668, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=32.295719844358, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24639444, Length=264, Percent_Identity=32.1969696969697, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24644339, Length=262, Percent_Identity=28.2442748091603, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=28.7937743190661, Blast_Score=84, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26829; Mature: 26698

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MAVEGLCAIVTGSASGLGAATAQLLAKAGMRIVVNYSNSKAEAEQTADLCRKEGVEVIVV
CCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE
QGDVSRDEDCRKIVAAAAPWGRLDVLINNAGTTKHVPHDQLDGLSAEDFQRIFGVNTIGP
ECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCH
FQMIRAARPLLEAAAQAAARASAVVNVSSVAGISGIGSSVAYAASKGALNTMTLSLSRAL
HHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
APSIRVNTVCPGYIDTPWFTKGRGEAGAKQVRDAVVARVPLRTASTAEDIAQLVVFLASP
CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
ASGQMTGEVVRMDAGMHLLG
CCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
AVEGLCAIVTGSASGLGAATAQLLAKAGMRIVVNYSNSKAEAEQTADLCRKEGVEVIVV
CCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE
QGDVSRDEDCRKIVAAAAPWGRLDVLINNAGTTKHVPHDQLDGLSAEDFQRIFGVNTIGP
ECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHCCCCCCH
FQMIRAARPLLEAAAQAAARASAVVNVSSVAGISGIGSSVAYAASKGALNTMTLSLSRAL
HHHHHHHHHHHHHHHHHHHHHHHHEEHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
APSIRVNTVCPGYIDTPWFTKGRGEAGAKQVRDAVVARVPLRTASTAEDIAQLVVFLASP
CCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
ASGQMTGEVVRMDAGMHLLG
CCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2583128; 9831526 [H]