| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is gsiB [H]
Identifier: 146337750
GI number: 146337750
Start: 648693
End: 650111
Strand: Direct
Name: gsiB [H]
Synonym: BRADO0624
Alternate gene names: 146337750
Gene position: 648693-650111 (Clockwise)
Preceding gene: 146337749
Following gene: 146337751
Centisome position: 8.7
GC content: 61.66
Gene sequence:
>1419_bases ATGGTCCAGAACGGTCCGACCCAGATGGTGTCCGGCAACATTTTCGAAGGTCTGCTGCGCTACAGCCCGAAGCTCGAGCC GCTGCCCGGCCTCGCCGAGAGCTGGACGATCAGCCCCGACGCCAAGGCCTATACGTTCAAGCTGAAGCCCGGCGTGACCT GGCACGACGGCAAGCCGTTCACCTCGGCCGACGTGCTGTTCTCGATCGAGATGCTGAAGCAGACGCATGCGCGCGCCCGC AACAACCTGGTCATGGTCGAGAAGGTCGAGGCGCCCGATGATCTCACCGTGGTGTTCACCTTGAAGGAGCCGTTCGGTCC GTTCATCGGCATCTTCGAGGTCGGCTCGCTGCCGATGGTGCCGAAGCATCTCTACGAGGGCACCGACTACAAGACCAATC CGAACAACAACGCGCCCATCGGTACCGGCCCCTTCATGTTCAAGGAATGGCAGAAGGGCTCGTTCATCCGCATGGTGAAA AACCCGAACTACCATGAGAAGGGAAAGCCCTATCTCGACGAGGTCTACTGGCAGATCATTCCAGATGCGGCAGCGCGCGC CGTGGCCTTCGAGACCGGCAAGGTCGACGTGCTGCCCGGCGGCTCGATCGAGAATTTCGACGTGCCGCGCGTCTCCAAGC TGCCGGGCGCATGCGTCACCGGCGCTGGCTGGGAATTTTTCTCGCCGCTCTCCTGGATGTGGTTGAACCTGCGCAACCCG ATTCTCGCCAACAAGAAAGTCCGGCAGGCGATCATGTACGCCATCGATCGCGACTTCGCCAAGGACGTGATCTGGAACGG GCTCGGCAAGGTGGCGACAGGCCCGTCGGCCTCGACCATCAAGTTCTACACCGATGACGTACCGAAGTACTCCTATGATC CCGCCAAGGCCAAGGCGCTGCTGAAGGAGGCCGGCTACAAGGGCGAGAAGATCCGCATGCTGCCGCTGGCCTATGGCGAG ACTTGGCAGCGCTGGGGCGAGGCCGTGAAGCAGAACCTCCAGGACGTCGGCATGACGATCGAGACGATCGCCACCGACGT GCCCGGCGGCAATCAGAAGATCATGGAGTGGGACTACGACCTCGCCTTCACCTATCTCTATCAGTATGGTGATCCCGCGC TCGGTGTCTCGCGCAACTACATCACCTCGGCCATCGCCAAGGGCCAGCTGTTCAACAATGTCGAGGGCTATTCGAACCCC GAGGTCGACAAGCTGTTCGCCGAAGGCGCGACGGCACCGACCGATGCCAAGCGCAAGGAGGCCTACGACAAGGTGCAGAA GATCCTCGTCGAGGACGTGCCGGTGGCCTGGCTGTTGGAGCTGCAGTTCCCGACCATCACCAAATGCAAGGTCAAGAACC TGATCACGACCGGCGTCGGCGTCAACGACGGCTTCCGCGACGCCTGGCTCGACAAATGA
Upstream 100 bases:
>100_bases CATCGGCTGCGGATTGTCCGCAGCTCATGCGGAGGAGCCGAAGATCGGCGGCGTCGTGAACGCCGTCATCCAGCCGGAGC CGCCGGGGTTGATGCTGGCA
Downstream 100 bases:
>100_bases TGGCAGGATTCGGAGCGCATCCGGGACGCTTGTGTATTGACGTATTGGGCTGTCGCGGCATGCCATCCGGCCAGTTTGTT ACTCCGTCATGCCCGGGCTT
Product: putative dipeptide ABC transporter substrate binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MVQNGPTQMVSGNIFEGLLRYSPKLEPLPGLAESWTISPDAKAYTFKLKPGVTWHDGKPFTSADVLFSIEMLKQTHARAR NNLVMVEKVEAPDDLTVVFTLKEPFGPFIGIFEVGSLPMVPKHLYEGTDYKTNPNNNAPIGTGPFMFKEWQKGSFIRMVK NPNYHEKGKPYLDEVYWQIIPDAAARAVAFETGKVDVLPGGSIENFDVPRVSKLPGACVTGAGWEFFSPLSWMWLNLRNP ILANKKVRQAIMYAIDRDFAKDVIWNGLGKVATGPSASTIKFYTDDVPKYSYDPAKAKALLKEAGYKGEKIRMLPLAYGE TWQRWGEAVKQNLQDVGMTIETIATDVPGGNQKIMEWDYDLAFTYLYQYGDPALGVSRNYITSAIAKGQLFNNVEGYSNP EVDKLFAEGATAPTDAKRKEAYDKVQKILVEDVPVAWLLELQFPTITKCKVKNLITTGVGVNDGFRDAWLDK
Sequences:
>Translated_472_residues MVQNGPTQMVSGNIFEGLLRYSPKLEPLPGLAESWTISPDAKAYTFKLKPGVTWHDGKPFTSADVLFSIEMLKQTHARAR NNLVMVEKVEAPDDLTVVFTLKEPFGPFIGIFEVGSLPMVPKHLYEGTDYKTNPNNNAPIGTGPFMFKEWQKGSFIRMVK NPNYHEKGKPYLDEVYWQIIPDAAARAVAFETGKVDVLPGGSIENFDVPRVSKLPGACVTGAGWEFFSPLSWMWLNLRNP ILANKKVRQAIMYAIDRDFAKDVIWNGLGKVATGPSASTIKFYTDDVPKYSYDPAKAKALLKEAGYKGEKIRMLPLAYGE TWQRWGEAVKQNLQDVGMTIETIATDVPGGNQKIMEWDYDLAFTYLYQYGDPALGVSRNYITSAIAKGQLFNNVEGYSNP EVDKLFAEGATAPTDAKRKEAYDKVQKILVEDVPVAWLLELQFPTITKCKVKNLITTGVGVNDGFRDAWLDK >Mature_472_residues MVQNGPTQMVSGNIFEGLLRYSPKLEPLPGLAESWTISPDAKAYTFKLKPGVTWHDGKPFTSADVLFSIEMLKQTHARAR NNLVMVEKVEAPDDLTVVFTLKEPFGPFIGIFEVGSLPMVPKHLYEGTDYKTNPNNNAPIGTGPFMFKEWQKGSFIRMVK NPNYHEKGKPYLDEVYWQIIPDAAARAVAFETGKVDVLPGGSIENFDVPRVSKLPGACVTGAGWEFFSPLSWMWLNLRNP ILANKKVRQAIMYAIDRDFAKDVIWNGLGKVATGPSASTIKFYTDDVPKYSYDPAKAKALLKEAGYKGEKIRMLPLAYGE TWQRWGEAVKQNLQDVGMTIETIATDVPGGNQKIMEWDYDLAFTYLYQYGDPALGVSRNYITSAIAKGQLFNNVEGYSNP EVDKLFAEGATAPTDAKRKEAYDKVQKILVEDVPVAWLLELQFPTITKCKVKNLITTGVGVNDGFRDAWLDK
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1789966, Length=357, Percent_Identity=31.3725490196078, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1787762, Length=435, Percent_Identity=27.3563218390805, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1787052, Length=471, Percent_Identity=26.7515923566879, Blast_Score=136, Evalue=4e-33, Organism=Escherichia coli, GI1789887, Length=323, Percent_Identity=30.6501547987616, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1787551, Length=496, Percent_Identity=21.9758064516129, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787495, Length=479, Percent_Identity=23.3820459290188, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1789397, Length=484, Percent_Identity=25, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI87081878, Length=473, Percent_Identity=24.3128964059197, Blast_Score=90, Evalue=3e-19,
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 52725; Mature: 52725
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQNGPTQMVSGNIFEGLLRYSPKLEPLPGLAESWTISPDAKAYTFKLKPGVTWHDGKPF CCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCEECCCCCC TSADVLFSIEMLKQTHARARNNLVMVEKVEAPDDLTVVFTLKEPFGPFIGIFEVGSLPMV CCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEECCCCCCEEEHEECCCCCCC PKHLYEGTDYKTNPNNNAPIGTGPFMFKEWQKGSFIRMVKNPNYHEKGKPYLDEVYWQII HHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHC PDAAARAVAFETGKVDVLPGGSIENFDVPRVSKLPGACVTGAGWEFFSPLSWMWLNLRNP CHHHHHEEEEECCCEEECCCCCCCCCCCCCHHHCCCCEEECCCCHHHCCHHHHHHHCCCC ILANKKVRQAIMYAIDRDFAKDVIWNGLGKVATGPSASTIKFYTDDVPKYSYDPAKAKAL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHH LKEAGYKGEKIRMLPLAYGETWQRWGEAVKQNLQDVGMTIETIATDVPGGNQKIMEWDYD HHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEECCH LAFTYLYQYGDPALGVSRNYITSAIAKGQLFNNVEGYSNPEVDKLFAEGATAPTDAKRKE HEEEEHHHCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHH AYDKVQKILVEDVPVAWLLELQFPTITKCKVKNLITTGVGVNDGFRDAWLDK HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHEECCCCCCCCCHHCCCC >Mature Secondary Structure MVQNGPTQMVSGNIFEGLLRYSPKLEPLPGLAESWTISPDAKAYTFKLKPGVTWHDGKPF CCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCEEEEEECCCCEECCCCCC TSADVLFSIEMLKQTHARARNNLVMVEKVEAPDDLTVVFTLKEPFGPFIGIFEVGSLPMV CCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEECCCCCCEEEHEECCCCCCC PKHLYEGTDYKTNPNNNAPIGTGPFMFKEWQKGSFIRMVKNPNYHEKGKPYLDEVYWQII HHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHC PDAAARAVAFETGKVDVLPGGSIENFDVPRVSKLPGACVTGAGWEFFSPLSWMWLNLRNP CHHHHHEEEEECCCEEECCCCCCCCCCCCCHHHCCCCEEECCCCHHHCCHHHHHHHCCCC ILANKKVRQAIMYAIDRDFAKDVIWNGLGKVATGPSASTIKFYTDDVPKYSYDPAKAKAL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHH LKEAGYKGEKIRMLPLAYGETWQRWGEAVKQNLQDVGMTIETIATDVPGGNQKIMEWDYD HHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEECCH LAFTYLYQYGDPALGVSRNYITSAIAKGQLFNNVEGYSNPEVDKLFAEGATAPTDAKRKE HEEEEHHHCCCCCCCCCHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHCCCCCCCCHHHHH AYDKVQKILVEDVPVAWLLELQFPTITKCKVKNLITTGVGVNDGFRDAWLDK HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHEECCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA