| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is aroB [H]
Identifier: 146337737
GI number: 146337737
Start: 633392
End: 635194
Strand: Direct
Name: aroB [H]
Synonym: BRADO0609
Alternate gene names: 146337737
Gene position: 633392-635194 (Clockwise)
Preceding gene: 146337730
Following gene: 146337738
Centisome position: 8.49
GC content: 69.27
Gene sequence:
>1803_bases ATGACCGAACTGACGCAACCCGCATCCGGCCCAGGCGCTCCGGAGGCCGCGATCCTCGCGGGCCTCGGCAAGCGGCTGAT CGTGCTGGTCGGCATGATGGGCGTCGGCAAGTCGACGGTCGGCCGGCGGCTCGCGGCGCGGCTGCGGCTGCCCTTCGTCG ACGCGGACACCGAGATCGAGACCGCGGCCGGCATGAGCATACCGGAGATCTTCGAATCGCGCGGCGAAGACTATTTCCGC AACGGCGAGGCACGGGTGATCGCCCGCCTGCTCGAAAGCGGGCCGGCGGTGCTGGCCACCGGCGGCGGCGCCTTCATGCG CGAGGAGACCCGCCGCCGCATCCACGAGAAGGCGGTCTCGGTGTGGCTGAAGGCCGATGCCGAGGTGATCATGCGCCGCG TCCGGCGCCGCGCCGACCGGCCGCTGCTGCAGACTGCCGACCCCGAAGGCACGGTGACGCGGCTCCTGAGCGAGCGCGAG CCGGTCTACGGGCTCGCCGATCTCAAGATCTGCTCGCGCGACGTGCCGCATGACAGGGTCGTGGAGGACTGCCTGCAGGA GCTGCAGACGTTCCTGTCCCCGGCCATGGCCGCGGCTCCGGCGGCGGAGCCGCAGCCCCATTCCCTCTCCTCCGATTCCG TACAGGGCGTTTCGATGACGGCACCATTGAAGTCTTCCGATCCGATCATCGTCGACGTCGCGCTCGGCGAGCGCGCCTAT GACATCGTCATCGGCCGCGGCGTGCTGGACACGCTGGGCCGGCGCATCGCAGCGCTGCGGCCGGGCGTGCGCACCGCCAT CGTCACCGACCGCACCGTCGCTGCGCATTGGCTCAAGCCGACCGAGGCGATTCTGGCGGAGGCGGGGATCCCGTCATCCA CCATCGTGGTTGAGGAGGGGGAGGGCTCCAAGACCTATGCCGGCCTCGAAAAGGTCAGCGAGGCGCTTATCTCGGCAAAG ATCGAGCGCAACGATCTCGTCATCGCGCTCGGCGGCGGCGTGGTCGGCGATCTCGCCGGCTTTGCGGCTTCGATCCTGCG CCGCGGCGTCGATTTCGTGCAGGTGCCGACCTCGCTGCTGGCGCAGGTCGATTCCTCCGTCGGCGGCAAAACGGGGATCA ACTCGCCGCAGGGCAAGAACCTGCTCGGCGCCTTCCACCAGCCGGTGCTGGTGATCGCCGACACCGCGGTGCTCGACACC TTGTCGCCGCGCCAGTTCCGCGCCGGCTATGCCGAGGTCGCCAAATACGGCCTGCTCGGCGACGCCGGCTTCTTCGCCTG GCTCGAGGCCAACCAAGCCGAGATCGTCACGGGCGGCGCCGCGCGCGAGCATGCGGTCGCGACCTCCTGCCGCGCCAAGG CCGCGATCGTCGCCCGCGACGAGCGCGAGACCGGCGACCGCGCGCTGCTCAATCTCGGCCACACCTTCGGGCATGCGCTC GAGGCCATCACCGGCTTCTCCGACCGGCTGTTCCATGGCGAGGGCGTCTCGGTCGGCATGGTGCTGGCGGCGCAGTTTTC GGCTGAGCTCGGCATGCTGCCGCCCGGCGACGTCACCAGGATCGAGCGTCACCTTGCCGCAGTGGGCCTGCCGACCCATC TGCAGGACATCGCCGGCTTCGCCCAGGAAGGGATCGGCGACGCCGAACGGCTTTTGGCCTTGATGGCGCAGGACAAGAAG GTCAAGCGCGGCAAGCTCACCTTCATCCTGATGGAAGCGATCGGCCGCGCGGTCATTGCGAATGACGTCGACCCGGCAAG GGTCCGTGACTTCCTGCAGGCCAAATTGGACAGAAGCGGCTGA
Upstream 100 bases:
>100_bases CGGGCTCGCGCGGCGCGCGCCCTGGAATGACGGCGGTGGGGCGGCCGAAGCGGAACAGGATGCCTTTGAAAGCAGCAGGG CCTGGGTTAGAAGCCCGGAT
Downstream 100 bases:
>100_bases TCCCAGGTGCTTTACGCCGCGTTGAGCAGTAGCGGCGCATGATCGGCGGCTTCCCTCGAGAGTGATATGGCGTCATGGAC TGGCTCACACTCACCATCGT
Product: bifunctional shikimate kinase/dehydroquinate synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 600; Mature: 599
Protein sequence:
>600_residues MTELTQPASGPGAPEAAILAGLGKRLIVLVGMMGVGKSTVGRRLAARLRLPFVDADTEIETAAGMSIPEIFESRGEDYFR NGEARVIARLLESGPAVLATGGGAFMREETRRRIHEKAVSVWLKADAEVIMRRVRRRADRPLLQTADPEGTVTRLLSERE PVYGLADLKICSRDVPHDRVVEDCLQELQTFLSPAMAAAPAAEPQPHSLSSDSVQGVSMTAPLKSSDPIIVDVALGERAY DIVIGRGVLDTLGRRIAALRPGVRTAIVTDRTVAAHWLKPTEAILAEAGIPSSTIVVEEGEGSKTYAGLEKVSEALISAK IERNDLVIALGGGVVGDLAGFAASILRRGVDFVQVPTSLLAQVDSSVGGKTGINSPQGKNLLGAFHQPVLVIADTAVLDT LSPRQFRAGYAEVAKYGLLGDAGFFAWLEANQAEIVTGGAAREHAVATSCRAKAAIVARDERETGDRALLNLGHTFGHAL EAITGFSDRLFHGEGVSVGMVLAAQFSAELGMLPPGDVTRIERHLAAVGLPTHLQDIAGFAQEGIGDAERLLALMAQDKK VKRGKLTFILMEAIGRAVIANDVDPARVRDFLQAKLDRSG
Sequences:
>Translated_600_residues MTELTQPASGPGAPEAAILAGLGKRLIVLVGMMGVGKSTVGRRLAARLRLPFVDADTEIETAAGMSIPEIFESRGEDYFR NGEARVIARLLESGPAVLATGGGAFMREETRRRIHEKAVSVWLKADAEVIMRRVRRRADRPLLQTADPEGTVTRLLSERE PVYGLADLKICSRDVPHDRVVEDCLQELQTFLSPAMAAAPAAEPQPHSLSSDSVQGVSMTAPLKSSDPIIVDVALGERAY DIVIGRGVLDTLGRRIAALRPGVRTAIVTDRTVAAHWLKPTEAILAEAGIPSSTIVVEEGEGSKTYAGLEKVSEALISAK IERNDLVIALGGGVVGDLAGFAASILRRGVDFVQVPTSLLAQVDSSVGGKTGINSPQGKNLLGAFHQPVLVIADTAVLDT LSPRQFRAGYAEVAKYGLLGDAGFFAWLEANQAEIVTGGAAREHAVATSCRAKAAIVARDERETGDRALLNLGHTFGHAL EAITGFSDRLFHGEGVSVGMVLAAQFSAELGMLPPGDVTRIERHLAAVGLPTHLQDIAGFAQEGIGDAERLLALMAQDKK VKRGKLTFILMEAIGRAVIANDVDPARVRDFLQAKLDRSG >Mature_599_residues TELTQPASGPGAPEAAILAGLGKRLIVLVGMMGVGKSTVGRRLAARLRLPFVDADTEIETAAGMSIPEIFESRGEDYFRN GEARVIARLLESGPAVLATGGGAFMREETRRRIHEKAVSVWLKADAEVIMRRVRRRADRPLLQTADPEGTVTRLLSEREP VYGLADLKICSRDVPHDRVVEDCLQELQTFLSPAMAAAPAAEPQPHSLSSDSVQGVSMTAPLKSSDPIIVDVALGERAYD IVIGRGVLDTLGRRIAALRPGVRTAIVTDRTVAAHWLKPTEAILAEAGIPSSTIVVEEGEGSKTYAGLEKVSEALISAKI ERNDLVIALGGGVVGDLAGFAASILRRGVDFVQVPTSLLAQVDSSVGGKTGINSPQGKNLLGAFHQPVLVIADTAVLDTL SPRQFRAGYAEVAKYGLLGDAGFFAWLEANQAEIVTGGAAREHAVATSCRAKAAIVARDERETGDRALLNLGHTFGHALE AITGFSDRLFHGEGVSVGMVLAAQFSAELGMLPPGDVTRIERHLAAVGLPTHLQDIAGFAQEGIGDAERLLALMAQDKKV KRGKLTFILMEAIGRAVIANDVDPARVRDFLQAKLDRSG
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; second step. [C]
COG id: COG0337
COG function: function code E; 3-dehydroquinate synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the dehydroquinate synthase family [H]
Homologues:
Organism=Escherichia coli, GI1789791, Length=352, Percent_Identity=44.6022727272727, Blast_Score=258, Evalue=1e-69, Organism=Escherichia coli, GI87082255, Length=153, Percent_Identity=43.1372549019608, Blast_Score=111, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6320332, Length=373, Percent_Identity=36.1930294906166, Blast_Score=202, Evalue=1e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016303 - InterPro: IPR002658 - InterPro: IPR016037 [H]
Pfam domain/function: PF01761 DHQ_synthase [H]
EC number: =4.2.3.4 [H]
Molecular weight: Translated: 63683; Mature: 63552
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS01128 SHIKIMATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTELTQPASGPGAPEAAILAGLGKRLIVLVGMMGVGKSTVGRRLAARLRLPFVDADTEIE CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCCHH TAAGMSIPEIFESRGEDYFRNGEARVIARLLESGPAVLATGGGAFMREETRRRIHEKAVS HHCCCCHHHHHHHCCCHHHHCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH VWLKADAEVIMRRVRRRADRPLLQTADPEGTVTRLLSEREPVYGLADLKICSRDVPHDRV HHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHH VEDCLQELQTFLSPAMAAAPAAEPQPHSLSSDSVQGVSMTAPLKSSDPIIVDVALGERAY HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEE DIVIGRGVLDTLGRRIAALRPGVRTAIVTDRTVAAHWLKPTEAILAEAGIPSSTIVVEEG EEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCHHHHHHHHCCCCCCEEEEECC EGSKTYAGLEKVSEALISAKIERNDLVIALGGGVVGDLAGFAASILRRGVDFVQVPTSLL CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHH AQVDSSVGGKTGINSPQGKNLLGAFHQPVLVIADTAVLDTLSPRQFRAGYAEVAKYGLLG HHHHHCCCCCCCCCCCCCCCHHHHHCCCEEEEECHHHHHCCCCHHHHCCHHHHHHHCCCC DAGFFAWLEANQAEIVTGGAAREHAVATSCRAKAAIVARDERETGDRALLNLGHTFGHAL CCCEEEEEECCCCEEEECCCCHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHHHHH EAITGFSDRLFHGEGVSVGMVLAAQFSAELGMLPPGDVTRIERHLAAVGLPTHLQDIAGF HHHHCCHHHEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH AQEGIGDAERLLALMAQDKKVKRGKLTFILMEAIGRAVIANDVDPARVRDFLQAKLDRSG HHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure TELTQPASGPGAPEAAILAGLGKRLIVLVGMMGVGKSTVGRRLAARLRLPFVDADTEIE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCCHH TAAGMSIPEIFESRGEDYFRNGEARVIARLLESGPAVLATGGGAFMREETRRRIHEKAVS HHCCCCHHHHHHHCCCHHHHCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH VWLKADAEVIMRRVRRRADRPLLQTADPEGTVTRLLSEREPVYGLADLKICSRDVPHDRV HHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHH VEDCLQELQTFLSPAMAAAPAAEPQPHSLSSDSVQGVSMTAPLKSSDPIIVDVALGERAY HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEE DIVIGRGVLDTLGRRIAALRPGVRTAIVTDRTVAAHWLKPTEAILAEAGIPSSTIVVEEG EEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCHHHHHHHHCCCCCCEEEEECC EGSKTYAGLEKVSEALISAKIERNDLVIALGGGVVGDLAGFAASILRRGVDFVQVPTSLL CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHH AQVDSSVGGKTGINSPQGKNLLGAFHQPVLVIADTAVLDTLSPRQFRAGYAEVAKYGLLG HHHHHCCCCCCCCCCCCCCCHHHHHCCCEEEEECHHHHHCCCCHHHHCCHHHHHHHCCCC DAGFFAWLEANQAEIVTGGAAREHAVATSCRAKAAIVARDERETGDRALLNLGHTFGHAL CCCEEEEEECCCCEEEECCCCHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHHHHH EAITGFSDRLFHGEGVSVGMVLAAQFSAELGMLPPGDVTRIERHLAAVGLPTHLQDIAGF HHHHCCHHHEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH AQEGIGDAERLLALMAQDKKVKRGKLTFILMEAIGRAVIANDVDPARVRDFLQAKLDRSG HHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA