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The map label for this gene is xerD [H]

Identifier: 146337735

GI number: 146337735

Start: 631787

End: 632713

Strand: Reverse

Name: xerD [H]

Synonym: BRADO0607

Alternate gene names: 146337735

Gene position: 632713-631787 (Counterclockwise)

Preceding gene: 146337736

Following gene: 146337734

Centisome position: 8.49

GC content: 67.42

Gene sequence:

>927_bases
ATGAGCCTGTTCCTGGACATGATGGCTGCCGAGCAGGGCGCCGGCCAGAACACGCTCGACGCCTATCGCCGCGATCTCAT
CGATCTCTCCGAATTTCTCACCCGCAAAGGCAACGGCTTCGCCGCGGCCGACACGCAGGCGCTGCGGGACTATCTGGCGA
ATCTCGATCTCAGGGGTTTCAAGTCCTCCAGCGTGGCGCGGCGGCTGTCGGCGATGCGGCACCTGTTCCGCTTCCTGTTG
AGCGAGCGCATCCGCAGCGACGATCCCGCCGCCATCCTGTCCGGCCCGAAGCGCGGCCGCGCTCTGCCGAAAGTGCTCTC
GATCGGCGACGTCGACCGCATGCTGACCAAGGCCAAGGAGCTCTCGGAAGTCGCCGACGCCTCGCTGTCGCAGCGGCTCC
GCGCGCTCAGGCTGTATTGCCTGCTCGAGGTACTCTACGCCACCGGCCTGCGCGTCTCCGAGCTGGTGGCGCTGCCGCGC
ACGGCGGCGCGTAACGATGCCCGCATGATCGTGGTGCGAGGCAAGGGCAACAAGGAGCGGCTGGTGCCGCTCAATCAAGC
CTCGCGCCAGGCCATGGCCGACTATCTGGCGATGCTGGACAGGCAGAAGCCGCACGCGAAGGCCAGCGCCACCTTCGGCA
AATGGCTGTTTCCCTCGTTCGGCGAGAGCGGGCATTTGACCCGGCAGCACTTCGCCCGCGACCTCAAGGAGCTCGCGGCG
GCGAGCGGCCTGCCGGCGCGGCTGGTGTCGCCGCACGTGCTGCGCCACGCCTTTGCCAGCCATTTGCTGCACAATGGCGC
CGACCTGCGCATCGTGCAGACCCTGCTCGGCCACACCGATATCTCGACCACCCAGATCTACACTCACGTGGTCGAGGAGC
GGCTGAAGAGCCTCGTGCGCGACCTGCACCCCCTGGCCGAGACCTGA

Upstream 100 bases:

>100_bases
CACCGCTCGACACACCGGCGCAAGCTTCTCGTCCTGATTCGATCGCCCGGGTCTCAGCGGATTTCACCACATGAAGGTCA
AGGCTTCCGACGACCGGCTG

Downstream 100 bases:

>100_bases
GCGCGCCCCATACCTTCCCGCAACCAAATCCGCGGGTCTGACGCGCGGCCCGCTTGACTTCGCGCCCGTCTGCGCTGAAA
GAGCGCCATCCTGCCCGCGA

Product: site-specific tyrosine recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSLFLDMMAAEQGAGQNTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGFKSSSVARRLSAMRHLFRFLL
SERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKELSEVADASLSQRLRALRLYCLLEVLYATGLRVSELVALPR
TAARNDARMIVVRGKGNKERLVPLNQASRQAMADYLAMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAA
ASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAET

Sequences:

>Translated_308_residues
MSLFLDMMAAEQGAGQNTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGFKSSSVARRLSAMRHLFRFLL
SERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKELSEVADASLSQRLRALRLYCLLEVLYATGLRVSELVALPR
TAARNDARMIVVRGKGNKERLVPLNQASRQAMADYLAMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAA
ASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAET
>Mature_307_residues
SLFLDMMAAEQGAGQNTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGFKSSSVARRLSAMRHLFRFLLS
ERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKELSEVADASLSQRLRALRLYCLLEVLYATGLRVSELVALPRT
AARNDARMIVVRGKGNKERLVPLNQASRQAMADYLAMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAAA
SGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLHPLAET

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=305, Percent_Identity=46.2295081967213, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1790244, Length=311, Percent_Identity=32.475884244373, Blast_Score=137, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34241; Mature: 34110

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFLDMMAAEQGAGQNTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGF
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
KSSSVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHH
LSEVADASLSQRLRALRLYCLLEVLYATGLRVSELVALPRTAARNDARMIVVRGKGNKER
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCEEEEEECCCCCCC
LVPLNQASRQAMADYLAMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAA
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVR
HCCCCHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
DLHPLAET
HHHHHCCC
>Mature Secondary Structure 
SLFLDMMAAEQGAGQNTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGF
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
KSSSVARRLSAMRHLFRFLLSERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKE
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHH
LSEVADASLSQRLRALRLYCLLEVLYATGLRVSELVALPRTAARNDARMIVVRGKGNKER
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCEEEEEECCCCCCC
LVPLNQASRQAMADYLAMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAA
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
ASGLPARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVR
HCCCCHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
DLHPLAET
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]