| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yaeT [H]
Identifier: 146337393
GI number: 146337393
Start: 241580
End: 244084
Strand: Direct
Name: yaeT [H]
Synonym: BRADO0226
Alternate gene names: 146337393
Gene position: 241580-244084 (Clockwise)
Preceding gene: 146337389
Following gene: 146337395
Centisome position: 3.24
GC content: 64.91
Gene sequence:
>2505_bases ATGATGCGTCTGAGACTGCCGGGCGTGCTTGCCCTGATGCTGCTGGCCATGCCCGTTTCGTCGCTGCCCCGCATGGCGGT GGCGGCACCTGCTGTTGCGGCGACGTCGATCACCGTCGAGGGCAACCGCCGCATCGAGGCCGATACCATCCGCTCCTACT TCAAGCCGGGCCCGTCCGGCGCGCTCGATGCCGGCCAGGTGGACGACGGCCTGAAGGCGCTGATCGAGACCGGCCTGTTC GCCGACGTGAAGATCGACCGTCAGGGCGGCCGGCTCATCGTGCGGGTGGTCGAAAATCCGGTGATCGGCCGCGTCGCCTT CGAGGGCAACAAGAAAGTCAAGGACGAGCAGCTCAGCGCCGAGGTGCAGTCGAAGCCGCGCGGCACGCTGTCGCGGCCGA TGGTGCAGTCGGACGCGCAGCGCATAGCCGAAATCTACCGCCGCTCCGGCCGCTATGACGTCCGCGTCACGCCGGAGATC ATCGAGCAGCCGAACAATCGGGTCGATCTCGTCTTCACCGTGGTCGAGGGCGTCAAGACCAGCGTGAAATCGGTCGACTT CGTCGGCAACAAAGCCTTTTCCGCCACGCGCCTGCGCGACATCATCAAGACCCGCGCCACCAACTGGCTCAGCTTCCTCG CCAGCAACGACATCTACGATCCCGACCGCGTCGAGGCCGACCGCGATCTCATCCGCCGCTTCTACCTGAAGAACGGCTAT GCGGACGTTCAGGTCGTCGCCGCGCTCACTGAATATGATCCGGAACAGAAGGGCTTCCTGGTCACTTTCCAGATCGAGGA GGGCCAGCAATACCGCGTCGGCTCGGTCCAGTTCCAATCGACCATCGCAGCCCTCGACGGCAACACCTTGCGCGGCTACT CGCGCGTCAATGTCGGAGCGCTGTACAACGTCGAGCAGCTCGAGAAATCGGTCGAGGAGATGCAGATCGAGGCCTCGCGC CGCGGCTTCGCCTTCGCCGTGGTGCGCCCGCGCGGCGACCGCAATCTCGAGGCCCATACGGTCGCGATCGTGTTCTCCGT CGACGAGGGCCCGCGCACCTATATCGAGCGCATCTCGATCCGCGGCAACACCCGCACCCGGGACTATGTGATCCGGCGCG AGTTCGATATCTCCGAGGGCGACGCCTACAACCGCGCGCTGGTCGACCGCGCCGAGCGGCGGTTGAAGAACCTCGACTTC TTCAAGGACGTCAAGATCGCGACCGAGCCGGGCTCGTCGAGCGATCGCGTGATCCTCGTGGTCAATCTCGAGGAGAAGTC GACCGGCGACTTCTCGATCTCCGGCGGCTATTCGACCACCGACGGTGCGCTCGCCGAAGTGTCGATCTCCGAGCGCAACT TCCTCGGCCGCGGCCTGTTCGCCAAGGCGTCGGTGACGTACGGCCAGTATGCGCGCGGCGTGTCGCTGTCCTTCGTCGAG CCCTATCTCCTCGACTACCGCGTCGCGCTCGGCCTCGACGTCTCCTACCGCCAGCAGCTCGCCAACAGCTACACCAGCTA TGGCACCCGCACCGTGGGCTTCAGCCCGCGGCTCGGCTTCCAGCTCCGCGAGGACCTGTCTCTGCAGCTGCGCTACTCGC TATATCGGCAGGAGATCACCCTGCCGTCCTATCTGGCGAACTGCAACAACAACGCGGCAAACGGCCTGCTCGCCTTCAAT CCGACACCGGCCTATATCCAGAGCGTGCTCGGCGGCGTCGACCCGACCAACTCGACCACGTCAGGCGTCTATGGCTACGG CTGCTACGGCGACGGCGAATCGAGCCTGGCGGTGCGCAAGGAGCTGAACCAAGGCGCCTCGTTGACCTCGGCGCTCGGCT ATACGTTGACCTACAACACGCTCGACAACACCAAGAACCCGACCGAAGGCCTCCTGATCGACTGGCGCCAGGATTTCGCC GGCGTCGGCGGCAATGTGAGCTATCTGAAATCGGCGGTCGACGCCAAATATTTCACGCTGCTGGTCTCCGAGATCGTCAG CGTCATCCATCTGCAGGGCGGCGTGCTCGAGAAGATCGGCGACAAGGACCTGCGCATGCTCGATCATTACCAGATGGGTC CGACGCTGGTCCGCGGCTTCGCCGCCAACGGCATCGGCCCGCGCGACATCACCTATCGCAGCTTCGGCGCGACGGGCGAC GCGCTCGGTGGCACTAAATATTGGGGCGCCTCCGCCGAGTTGCAGATGCCGTTCTGGTTCTTGCCGAAGGAGATCGGCCT GAAAGGCTCGGTCTACGCCGACGCCGGTTCGCTGTGGGGCTACCAGGGCCCGACGTCATGGGCCGCCACCGGCGAGGTCA ACACGTCCGCATGCAAATGCGCGATGCAATATGACGACAGCAAGGTCGTCCGCTCCTCCGTCGGCGTCGGCCTGATCTGG GCCTCCCCGTTCGGCCCGCTCCGCTTCGACTATGCGGTGCCGCTGACCAAGGGCAAATACGACGTCGTGCAGGAATTCCG GTTCGGCGGCGGCACGTCGTTCTGA
Upstream 100 bases:
>100_bases GATTGGCGCATCACGACCATCTTTGACGGGCATCAGCGATTCCCATGGGCGTGCCGACACTCGCAAGGTGCGCCGGGGAC TTCCTTTCGAAAGAGCGTCG
Downstream 100 bases:
>100_bases GGCGGGTGAAGGACGACGCTTGTAAAGGCGGCTAGAGCCCCCACTGCCGATCAGTTGGACGGTGCACTTCCCTCCCCGCA AGGGGGAGGGGAGCCGACCT
Product: putative outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 834; Mature: 834
Protein sequence:
>834_residues MMRLRLPGVLALMLLAMPVSSLPRMAVAAPAVAATSITVEGNRRIEADTIRSYFKPGPSGALDAGQVDDGLKALIETGLF ADVKIDRQGGRLIVRVVENPVIGRVAFEGNKKVKDEQLSAEVQSKPRGTLSRPMVQSDAQRIAEIYRRSGRYDVRVTPEI IEQPNNRVDLVFTVVEGVKTSVKSVDFVGNKAFSATRLRDIIKTRATNWLSFLASNDIYDPDRVEADRDLIRRFYLKNGY ADVQVVAALTEYDPEQKGFLVTFQIEEGQQYRVGSVQFQSTIAALDGNTLRGYSRVNVGALYNVEQLEKSVEEMQIEASR RGFAFAVVRPRGDRNLEAHTVAIVFSVDEGPRTYIERISIRGNTRTRDYVIRREFDISEGDAYNRALVDRAERRLKNLDF FKDVKIATEPGSSSDRVILVVNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQYARGVSLSFVE PYLLDYRVALGLDVSYRQQLANSYTSYGTRTVGFSPRLGFQLREDLSLQLRYSLYRQEITLPSYLANCNNNAANGLLAFN PTPAYIQSVLGGVDPTNSTTSGVYGYGCYGDGESSLAVRKELNQGASLTSALGYTLTYNTLDNTKNPTEGLLIDWRQDFA GVGGNVSYLKSAVDAKYFTLLVSEIVSVIHLQGGVLEKIGDKDLRMLDHYQMGPTLVRGFAANGIGPRDITYRSFGATGD ALGGTKYWGASAELQMPFWFLPKEIGLKGSVYADAGSLWGYQGPTSWAATGEVNTSACKCAMQYDDSKVVRSSVGVGLIW ASPFGPLRFDYAVPLTKGKYDVVQEFRFGGGTSF
Sequences:
>Translated_834_residues MMRLRLPGVLALMLLAMPVSSLPRMAVAAPAVAATSITVEGNRRIEADTIRSYFKPGPSGALDAGQVDDGLKALIETGLF ADVKIDRQGGRLIVRVVENPVIGRVAFEGNKKVKDEQLSAEVQSKPRGTLSRPMVQSDAQRIAEIYRRSGRYDVRVTPEI IEQPNNRVDLVFTVVEGVKTSVKSVDFVGNKAFSATRLRDIIKTRATNWLSFLASNDIYDPDRVEADRDLIRRFYLKNGY ADVQVVAALTEYDPEQKGFLVTFQIEEGQQYRVGSVQFQSTIAALDGNTLRGYSRVNVGALYNVEQLEKSVEEMQIEASR RGFAFAVVRPRGDRNLEAHTVAIVFSVDEGPRTYIERISIRGNTRTRDYVIRREFDISEGDAYNRALVDRAERRLKNLDF FKDVKIATEPGSSSDRVILVVNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQYARGVSLSFVE PYLLDYRVALGLDVSYRQQLANSYTSYGTRTVGFSPRLGFQLREDLSLQLRYSLYRQEITLPSYLANCNNNAANGLLAFN PTPAYIQSVLGGVDPTNSTTSGVYGYGCYGDGESSLAVRKELNQGASLTSALGYTLTYNTLDNTKNPTEGLLIDWRQDFA GVGGNVSYLKSAVDAKYFTLLVSEIVSVIHLQGGVLEKIGDKDLRMLDHYQMGPTLVRGFAANGIGPRDITYRSFGATGD ALGGTKYWGASAELQMPFWFLPKEIGLKGSVYADAGSLWGYQGPTSWAATGEVNTSACKCAMQYDDSKVVRSSVGVGLIW ASPFGPLRFDYAVPLTKGKYDVVQEFRFGGGTSF >Mature_834_residues MMRLRLPGVLALMLLAMPVSSLPRMAVAAPAVAATSITVEGNRRIEADTIRSYFKPGPSGALDAGQVDDGLKALIETGLF ADVKIDRQGGRLIVRVVENPVIGRVAFEGNKKVKDEQLSAEVQSKPRGTLSRPMVQSDAQRIAEIYRRSGRYDVRVTPEI IEQPNNRVDLVFTVVEGVKTSVKSVDFVGNKAFSATRLRDIIKTRATNWLSFLASNDIYDPDRVEADRDLIRRFYLKNGY ADVQVVAALTEYDPEQKGFLVTFQIEEGQQYRVGSVQFQSTIAALDGNTLRGYSRVNVGALYNVEQLEKSVEEMQIEASR RGFAFAVVRPRGDRNLEAHTVAIVFSVDEGPRTYIERISIRGNTRTRDYVIRREFDISEGDAYNRALVDRAERRLKNLDF FKDVKIATEPGSSSDRVILVVNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQYARGVSLSFVE PYLLDYRVALGLDVSYRQQLANSYTSYGTRTVGFSPRLGFQLREDLSLQLRYSLYRQEITLPSYLANCNNNAANGLLAFN PTPAYIQSVLGGVDPTNSTTSGVYGYGCYGDGESSLAVRKELNQGASLTSALGYTLTYNTLDNTKNPTEGLLIDWRQDFA GVGGNVSYLKSAVDAKYFTLLVSEIVSVIHLQGGVLEKIGDKDLRMLDHYQMGPTLVRGFAANGIGPRDITYRSFGATGD ALGGTKYWGASAELQMPFWFLPKEIGLKGSVYADAGSLWGYQGPTSWAATGEVNTSACKCAMQYDDSKVVRSSVGVGLIW ASPFGPLRFDYAVPLTKGKYDVVQEFRFGGGTSF
Specific function: Involved in the assembly of outer membrane proteins. Does not play a direct role in the export of outer membrane lipids [H]
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Homo sapiens, GI225543166, Length=249, Percent_Identity=28.5140562248996, Blast_Score=85, Evalue=3e-16, Organism=Escherichia coli, GI1786374, Length=802, Percent_Identity=26.4339152119701, Blast_Score=265, Evalue=7e-72,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 91722; Mature: 91722
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: PS00539 PYROKININ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRLRLPGVLALMLLAMPVSSLPRMAVAAPAVAATSITVEGNRRIEADTIRSYFKPGPSG CCEECCHHHHHHHHHHCCHHHCCCHHHHCCCEEEEEEEECCCCEECHHHHHHHHCCCCCC ALDAGQVDDGLKALIETGLFADVKIDRQGGRLIVRVVENPVIGRVAFEGNKKVKDEQLSA CCCCCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHH EVQSKPRGTLSRPMVQSDAQRIAEIYRRSGRYDVRVTPEIIEQPNNRVDLVFTVVEGVKT HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCCEEEEEEEHHHHHH SVKSVDFVGNKAFSATRLRDIIKTRATNWLSFLASNDIYDPDRVEADRDLIRRFYLKNGY HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC ADVQVVAALTEYDPEQKGFLVTFQIEEGQQYRVGSVQFQSTIAALDGNTLRGYSRVNVGA CCHHEEEHHHHCCCCCCCEEEEEEECCCCEEEECCEEEHHHHHHCCCCCCCCCCEECCCE LYNVEQLEKSVEEMQIEASRRGFAFAVVRPRGDRNLEAHTVAIVFSVDEGPRTYIERISI EECHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCCHHHHHEEEE RGNTRTRDYVIRREFDISEGDAYNRALVDRAERRLKNLDFFKDVKIATEPGSSSDRVILV CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCEEEE VNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQYARGVSLSFVE EEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHCCCEEECCC PYLLDYRVALGLDVSYRQQLANSYTSYGTRTVGFSPRLGFQLREDLSLQLRYSLYRQEIT HHHHHEEHEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCCCHHHHHHHHHHHCC LPSYLANCNNNAANGLLAFNPTPAYIQSVLGGVDPTNSTTSGVYGYGCYGDGESSLAVRK CHHHHHCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHH ELNQGASLTSALGYTLTYNTLDNTKNPTEGLLIDWRQDFAGVGGNVSYLKSAVDAKYFTL HHCCCCCHHHHCCEEEEEECCCCCCCCCCCEEEEECHHHCCCCCCHHHHHHHHHHHHHHH LVSEIVSVIHLQGGVLEKIGDKDLRMLDHYQMGPTLVRGFAANGIGPRDITYRSFGATGD HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEECCCCCC ALGGTKYWGASAELQMPFWFLPKEIGLKGSVYADAGSLWGYQGPTSWAATGEVNTSACKC CCCCCCCCCCCCEEECCEEECCHHHCCCCEEEECCCCCCCCCCCCCCEECCCCCHHHHEE AMQYDDSKVVRSSVGVGLIWASPFGPLRFDYAVPLTKGKYDVVQEFRFGGGTSF EEECCCHHHHHHHCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MMRLRLPGVLALMLLAMPVSSLPRMAVAAPAVAATSITVEGNRRIEADTIRSYFKPGPSG CCEECCHHHHHHHHHHCCHHHCCCHHHHCCCEEEEEEEECCCCEECHHHHHHHHCCCCCC ALDAGQVDDGLKALIETGLFADVKIDRQGGRLIVRVVENPVIGRVAFEGNKKVKDEQLSA CCCCCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHH EVQSKPRGTLSRPMVQSDAQRIAEIYRRSGRYDVRVTPEIIEQPNNRVDLVFTVVEGVKT HHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHCCCCCEEEEEEEHHHHHH SVKSVDFVGNKAFSATRLRDIIKTRATNWLSFLASNDIYDPDRVEADRDLIRRFYLKNGY HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC ADVQVVAALTEYDPEQKGFLVTFQIEEGQQYRVGSVQFQSTIAALDGNTLRGYSRVNVGA CCHHEEEHHHHCCCCCCCEEEEEEECCCCEEEECCEEEHHHHHHCCCCCCCCCCEECCCE LYNVEQLEKSVEEMQIEASRRGFAFAVVRPRGDRNLEAHTVAIVFSVDEGPRTYIERISI EECHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEEEECCCCHHHHHEEEE RGNTRTRDYVIRREFDISEGDAYNRALVDRAERRLKNLDFFKDVKIATEPGSSSDRVILV CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCEEEE VNLEEKSTGDFSISGGYSTTDGALAEVSISERNFLGRGLFAKASVTYGQYARGVSLSFVE EEECCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHCCCEEECCC PYLLDYRVALGLDVSYRQQLANSYTSYGTRTVGFSPRLGFQLREDLSLQLRYSLYRQEIT HHHHHEEHEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCCCHHHHHHHHHHHCC LPSYLANCNNNAANGLLAFNPTPAYIQSVLGGVDPTNSTTSGVYGYGCYGDGESSLAVRK CHHHHHCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHH ELNQGASLTSALGYTLTYNTLDNTKNPTEGLLIDWRQDFAGVGGNVSYLKSAVDAKYFTL HHCCCCCHHHHCCEEEEEECCCCCCCCCCCEEEEECHHHCCCCCCHHHHHHHHHHHHHHH LVSEIVSVIHLQGGVLEKIGDKDLRMLDHYQMGPTLVRGFAANGIGPRDITYRSFGATGD HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEECCCCCC ALGGTKYWGASAELQMPFWFLPKEIGLKGSVYADAGSLWGYQGPTSWAATGEVNTSACKC CCCCCCCCCCCCEEECCEEECCHHHCCCCEEEECCCCCCCCCCCCCCEECCCCCHHHHEE AMQYDDSKVVRSSVGVGLIWASPFGPLRFDYAVPLTKGKYDVVQEFRFGGGTSF EEECCCHHHHHHHCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA