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The map label for this gene is ihfB

Identifier: 146337267

GI number: 146337267

Start: 109930

End: 110247

Strand: Reverse

Name: ihfB

Synonym: BRADO0094

Alternate gene names: 146337267

Gene position: 110247-109930 (Counterclockwise)

Preceding gene: 146337268

Following gene: 146337266

Centisome position: 1.48

GC content: 63.52

Gene sequence:

>318_bases
ATGATCAAATCCGAGCTTGTTCAGCGTATCGCCGAGCACAACCCGCACCTCTACCAGCGGGATGTCGAGAACATCGTCAA
CGCGATCCTCGATGAGATCGTCGCCGCGCTCGCGCGGGGTGATCGCGTCGAGCTGCGTGGCTTCGGCGCTTTTTCCGTCA
AGCACCGGCCCGCTCGGGCCGGGCGCAATCCGCGGACGGGCGCTCATGTCCCGGTGGATCAGAAGAGCGTGCCGTTCTTC
AAGACCGGCAAGGAAATGCGAGAGCGGCTGAACCGGGATAATCCCGAGGGTGCAGCTGCCGACGACGCGGACGATTGA

Upstream 100 bases:

>100_bases
TCACGCAAGCCGATTCCTGGGCCCGATGAATGATTTAGCGTCTTGACAGTCCTGCATATTTTCACGGAAATGGGACTGTC
TCCCCGGGTACATTTTCTCG

Downstream 100 bases:

>100_bases
GGCAGCGCGCTGTCCGCCGTGCTAATCGTCTGCGCCTGATTTCGAGGCGAATTCGGCCAGACTGCTACGAGCGAGCGCAT
GCGCAAATTCCTCACCGTTG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARAGRNPRTGAHVPVDQKSVPFF
KTGKEMRERLNRDNPEGAAADDADD

Sequences:

>Translated_105_residues
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARAGRNPRTGAHVPVDQKSVPFF
KTGKEMRERLNRDNPEGAAADDADD
>Mature_105_residues
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARAGRNPRTGAHVPVDQKSVPFF
KTGKEMRERLNRDNPEGAAADDADD

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=47.2527472527472, Blast_Score=97, Evalue=3e-22,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=37.3626373626374, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=37.5, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1788005, Length=80, Percent_Identity=35, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_BRASO (A4YJI9)

Other databases:

- EMBL:   CU234118
- RefSeq:   YP_001202315.1
- ProteinModelPortal:   A4YJI9
- SMR:   A4YJI9
- STRING:   A4YJI9
- GeneID:   5121462
- GenomeReviews:   CU234118_GR
- KEGG:   bra:BRADO0094
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- ProtClustDB:   PRK00199
- BioCyc:   BSP376:BRADO0094-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11740; Mature: 11740

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHC
GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDNPEGAAADDADD
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHC
GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDNPEGAAADDADD
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA