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The map label for this gene is ycaN [H]

Identifier: 146337241

GI number: 146337241

Start: 76847

End: 77791

Strand: Reverse

Name: ycaN [H]

Synonym: BRADO0067

Alternate gene names: 146337241

Gene position: 77791-76847 (Counterclockwise)

Preceding gene: 146337243

Following gene: 146337239

Centisome position: 1.04

GC content: 70.37

Gene sequence:

>945_bases
ATGAGCGATCCGGACCTGCGCGATCTCCAGGCTTTCGTGGCGGTGGCCCGCACCGGCAATTTTCGCCGGGCCGCCCGCGA
GCAGGGCGTTGCCGTGTCGAGCCTGAGCCAGCGGCTGAAGGAACTCGAGCAGCGGCTCGGGCTGCGACTGCTCAACAGGA
CGACCCGCAGTCTCGGGCTGACCCAGGCAGGCGAGGCGTTGCTGGCGCGGCTGGAGCCGGCGCTCCTCGAGATCGAGGCG
GCCATCGACCAGGTGCGCGGCCAGCAGCAGGTCGCAGCGGGCCGTCTGCGCATCAACGCGCCGCCGCCCGCGGTCGATCT
CGTGCTGGCGCCGATGGTCGCGCCGTTTCTCGCGGCCTATCCGCGGGTCGAGCTCGAGATCGCCGCCGAGAGCGGCTTCG
TCGACATCGTGCAGGCCGGCTTCGACGCCGGCGTGCGCTACGGCGAGCATCTGGCGCAGGACATGATCGCGGTGCCGCTC
GGCGAGCCGCAGCGCTACGCCATCGTCGCATCCCCCGAGCACGTTGAGCGACATGGCCGTCCCTCGCACCCCCGCGATCT
GCTGCAGCACGCCTGCATCCGCGCCCGTCTGTCCTCGGGCGCGATGCTGGATTGGGAGTTCGAAAAGGACGGTCAGGTCA
TTCGGATCGCGCCGCCGCCGAAGCTGATCGCGGTCCAGCTCGGCTTGGCGTTTCGCGCGGCGTGCGATGGCGTCGGCTAC
TGGATGGCGTTCGAAGGCCATGTGCGCCAGGCGCTGGCGGACGGCCGCCTGGTCAGCGTGCTCGACGATTGGTGTCCACC
GTTTCGAGGACCGTATCTCTACTATCCGAGCCGGCGACAGCCGCCGCCTGCCCTGGCCGCCTTCGTGGCGTTCGTCGGCG
AGTGGCGCAGGCGAGCAGGCGCATCGCAATCCGCTGTCGTCCCGGCCTCGAGCCGGGATCCATAG

Upstream 100 bases:

>100_bases
TGAGGCGGCCTGCGTGGACGCCTGACAACGCGGATATCGGCCCAATTCCGCAATTCGATAAGCTGGACAATTCAGAATAG
GCTGTTCAGAATAACGAACA

Downstream 100 bases:

>100_bases
CCACCGGCATGAGTGGGACGATCACGTCCAGCCGCGTTCCTTGCGGAGATCACGCGGTATGGGTCACGGCTCAGGCCGGG
ACGCCACCGATCGCGTAGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSDPDLRDLQAFVAVARTGNFRRAAREQGVAVSSLSQRLKELEQRLGLRLLNRTTRSLGLTQAGEALLARLEPALLEIEA
AIDQVRGQQQVAAGRLRINAPPPAVDLVLAPMVAPFLAAYPRVELEIAAESGFVDIVQAGFDAGVRYGEHLAQDMIAVPL
GEPQRYAIVASPEHVERHGRPSHPRDLLQHACIRARLSSGAMLDWEFEKDGQVIRIAPPPKLIAVQLGLAFRAACDGVGY
WMAFEGHVRQALADGRLVSVLDDWCPPFRGPYLYYPSRRQPPPALAAFVAFVGEWRRRAGASQSAVVPASSRDP

Sequences:

>Translated_314_residues
MSDPDLRDLQAFVAVARTGNFRRAAREQGVAVSSLSQRLKELEQRLGLRLLNRTTRSLGLTQAGEALLARLEPALLEIEA
AIDQVRGQQQVAAGRLRINAPPPAVDLVLAPMVAPFLAAYPRVELEIAAESGFVDIVQAGFDAGVRYGEHLAQDMIAVPL
GEPQRYAIVASPEHVERHGRPSHPRDLLQHACIRARLSSGAMLDWEFEKDGQVIRIAPPPKLIAVQLGLAFRAACDGVGY
WMAFEGHVRQALADGRLVSVLDDWCPPFRGPYLYYPSRRQPPPALAAFVAFVGEWRRRAGASQSAVVPASSRDP
>Mature_313_residues
SDPDLRDLQAFVAVARTGNFRRAAREQGVAVSSLSQRLKELEQRLGLRLLNRTTRSLGLTQAGEALLARLEPALLEIEAA
IDQVRGQQQVAAGRLRINAPPPAVDLVLAPMVAPFLAAYPRVELEIAAESGFVDIVQAGFDAGVRYGEHLAQDMIAVPLG
EPQRYAIVASPEHVERHGRPSHPRDLLQHACIRARLSSGAMLDWEFEKDGQVIRIAPPPKLIAVQLGLAFRAACDGVGYW
MAFEGHVRQALADGRLVSVLDDWCPPFRGPYLYYPSRRQPPPALAAFVAFVGEWRRRAGASQSAVVPASSRDP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=38.1944444444444, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=36.2068965517241, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=31.4189189189189, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=30.8474576271186, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI145693193, Length=273, Percent_Identity=31.5018315018315, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789639, Length=222, Percent_Identity=28.3783783783784, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=26.7123287671233, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789440, Length=297, Percent_Identity=23.5690235690236, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=23.3333333333333, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI157672245, Length=171, Percent_Identity=30.4093567251462, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786713, Length=186, Percent_Identity=33.8709677419355, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789173, Length=295, Percent_Identity=25.7627118644068, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI145693105, Length=222, Percent_Identity=23.8738738738739, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790399, Length=122, Percent_Identity=34.4262295081967, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787879, Length=146, Percent_Identity=34.2465753424658, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34327; Mature: 34196

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPDLRDLQAFVAVARTGNFRRAAREQGVAVSSLSQRLKELEQRLGLRLLNRTTRSLGL
CCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TQAGEALLARLEPALLEIEAAIDQVRGQQQVAAGRLRINAPPPAVDLVLAPMVAPFLAAY
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHC
PRVELEIAAESGFVDIVQAGFDAGVRYGEHLAQDMIAVPLGEPQRYAIVASPEHVERHGR
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHCCC
PSHPRDLLQHACIRARLSSGAMLDWEFEKDGQVIRIAPPPKLIAVQLGLAFRAACDGVGY
CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCEEEEHHHHHHHHHHCCCCE
WMAFEGHVRQALADGRLVSVLDDWCPPFRGPYLYYPSRRQPPPALAAFVAFVGEWRRRAG
EEEEHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
ASQSAVVPASSRDP
CCCCEECCCCCCCC
>Mature Secondary Structure 
SDPDLRDLQAFVAVARTGNFRRAAREQGVAVSSLSQRLKELEQRLGLRLLNRTTRSLGL
CCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TQAGEALLARLEPALLEIEAAIDQVRGQQQVAAGRLRINAPPPAVDLVLAPMVAPFLAAY
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHC
PRVELEIAAESGFVDIVQAGFDAGVRYGEHLAQDMIAVPLGEPQRYAIVASPEHVERHGR
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHCCC
PSHPRDLLQHACIRARLSSGAMLDWEFEKDGQVIRIAPPPKLIAVQLGLAFRAACDGVGY
CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCCEEEEHHHHHHHHHHCCCCE
WMAFEGHVRQALADGRLVSVLDDWCPPFRGPYLYYPSRRQPPPALAAFVAFVGEWRRRAG
EEEEHHHHHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
ASQSAVVPASSRDP
CCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]