| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301708
Identifier: 146301708
GI number: 146301708
Start: 4742841
End: 4745222
Strand: Direct
Name: 146301708
Synonym: Fjoh_3970
Alternate gene names: NA
Gene position: 4742841-4745222 (Clockwise)
Preceding gene: 146301703
Following gene: 146301709
Centisome position: 77.79
GC content: 32.49
Gene sequence:
>2382_bases ATGAAAAAAATTATTCTTTTAGTATTTGTTCTTCTGTTTAAAATCAATTCTTTCGGTCAGCAATTTGAACTGAAAGGAAA AGTAGTAAATCAAAATAAAACTGCTGTCGAGTTTGTAATTGCCAGTTTATTAAAAGACAATAAAATACTTGTATCTGTTT CTACCGACAGCTTAGGGAATTTTGAAATGAAAGCTGCAAAAGGAACTTACAAACTGTTACTGGAACAATTTGGAACAGAA TACCTCAACAAAGAAATTATACTTGACCAAAACATGGATTTTGGATTGATTGAAATTAAAGAAACGGTGCAGCTTGAAAG TGTGACGATACAATCAAGAAAAAAACTGGTTGAACAAAAGGTTGACCGACTTGTTTTTAATGTAGAAAACTCGGTAACAG CTGCCGGCGGAACTGCATTAGACGCACTAAAAGCAACTCCAACGGTTCGCGTGCAAAATGAAGTTATTTCAATTGTGGGT AAGGGAGAAATCCTGGTTATGATTGACGATCGTTTACAAAAAATGCCTCAGGAAGATTTGGCTGCATTTCTTAAATCTAT TCCGTCAGATAATATCAAAAGTATTGAAGTGATTACAACACCTCCGGCAAAATATGATGCTGAAGGCAACAGCGGATTAA TTAATATTAAACTGAAAACGGCAAAAGCAAATTCATGGAATGCTAATATTGGAAGTGCGTACACACAAAAAACATACGCA GGCGGCAACCTTAACGGATTATTTACTTATAATCAAGATAGACTTTCTCTACAGACTTCTGTAAGCAAAGGAACAGGAAA GCTTTTAAGAACTTCTGAAAGTAAAATTTATTACCCAAATGAAGTATGGAAACAGCAAACAGCCAATAAAACTAAAAACG ATTTATTGAGTTTAAGTCTTGGAATAGATTATAAACTAAGTACTAAATGGTCTGCAGGAATGAGCTATCTGGGCAGTTTT AATAATAGAGTTTCTGCTAATAATCCGTTTACGACTATATATACTGATGATGCTGTAAACTCTTATATCGCATCTGATGT AAAAGCTGAAAATGCTCCAAAAATGAATTCTGTAAATCTTCATAATACTTTTGTTTTGGATAGTTTAGGAAAAAATATTT CGGTTGATCTTGATTATTTTAATTATCAAAAAGACGATTACCGCTTTTTTTTCGGCAATGAATTAGATGCTGATAAGAAT GTTATTTCTAACAGTTTTTTTTCTTCTACAAACAGCAATCTTAATAAAATAAACAATTATTCAGCCGCTGTCGATTTTAC CTTTCCTGCTGTCTGGGCCAATCTTAGTTTTGGTGCAAAGGCTTTTCATACCAACACAAATAACAATCTTGTGGTGTATG ATAATGAAACGGGAAATCCAGTTTTAAATACCAATCAGTCGAATGTGTTTAATTATAAAGAATACAATCAGGCTTTGTAT TTTTCCGGAAGTAAAAAAATAAATCCTAAATGGGAAACGCAGATTGGTCTGCGATTTGAAGCTACGCAGACAAAAGGTTT CTCAGAAAATTTAAACCAAACGAATACCAATAATTACATTAAACTATTTCCAACGGCTTACGTGACGTATGTACCGAATG AAAACAATACTTTTTCGTTGAATTACAGCCGAAGAATCCGCAGACCTGATTTTGATTATCTAAATCCGTTTGTTATTAAA ACAAGTCCGTATTATTATTCAGAGGGAAATCCGTATTTGAAACCTTCTATTATTGATAATTTCGAGTTTTCATTTATTCG AAACCAAAAATGGGTGAATTCTGTTTATTTTTCTCAGGTTTCAGATTTCGGACAGGAATTATCAATTATCGATCCCGTTA CAAACGTTACGAGAAGTACGCCTTTAAATTATGCTGATACATATCAAATTGGATTTTCGACTTCATATAATTTCAACAAA TGGTCTTGGTGGAACAGTTTTACAGGTTTTAATCTGAACTATCAAAATGTAAAATCTAAAACTGATTTTATAAATTCAAT TGAAGGTTATAACGGGTATTTTTATACCAATAATGATTTTACGATAAACCATACCAAAACTTTGTTTTTGGGTGTGAATT ATGGGTTGCAGCTTCCGGGACGTTATCAGATTTTTAATATTTCGACTTTACATATTTTAGATGTTTCGGTTAAAGTTCTC ACTTTAAATAAAAAACTGGCGCTTACCATTGTTGGCGAAGATCTTTTAAATGCACAAAAACCATTAATTAGTTACCAATC AAACGGCATTAAAACCAATGCAAAAAGCTACAGCGATACAAGAGGTTTTAGAATTTCGTTAAGCTATAAATTTGGAAACC AAAAAATTCAGTCTAAACAAAGCAATTTCGGAAATGAAGAAGAAAGAAACAGGGCAAATTAA
Upstream 100 bases:
>100_bases GCCCAAAACAGGGTTTGTAGATTATTCGCGGGGGTTTGTCGATAAAAGTAGTTTTCAGCCTTTTTTCGATACAGTTTTGC AGGGTAATTAATTTAAAACC
Downstream 100 bases:
>100_bases TTTTGCCCTTATTTTTTTATCAAAATTGATTTTCTGCCCAAAATACAGTGTTTCAAAACAAAAAAATGGTTGCATTTTAT AACTTGAAACATCTAAATAA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor Plug; Nb-Dependent Receptor; NB-Dependent Receptor Exported Protein; NB Dependent Receptor; NB-Dependent Receptor Domain-Containing Protein; NB Dependent/Ligand-Gated Channel; Outer Membrane Receptor Family Transporter; Protein Containing nB-Dependent Receptor Plug Domain; Nb-Dependent Outer Membrane Receptor; Outer Membrane Receptor For Ferrienterochelin And Colicin; NB-Dependent Receptor Plug Domain-Containing Protein; Outer Membrane Receptor Protein Mostly Fe Transport
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MKKIILLVFVLLFKINSFGQQFELKGKVVNQNKTAVEFVIASLLKDNKILVSVSTDSLGNFEMKAAKGTYKLLLEQFGTE YLNKEIILDQNMDFGLIEIKETVQLESVTIQSRKKLVEQKVDRLVFNVENSVTAAGGTALDALKATPTVRVQNEVISIVG KGEILVMIDDRLQKMPQEDLAAFLKSIPSDNIKSIEVITTPPAKYDAEGNSGLINIKLKTAKANSWNANIGSAYTQKTYA GGNLNGLFTYNQDRLSLQTSVSKGTGKLLRTSESKIYYPNEVWKQQTANKTKNDLLSLSLGIDYKLSTKWSAGMSYLGSF NNRVSANNPFTTIYTDDAVNSYIASDVKAENAPKMNSVNLHNTFVLDSLGKNISVDLDYFNYQKDDYRFFFGNELDADKN VISNSFFSSTNSNLNKINNYSAAVDFTFPAVWANLSFGAKAFHTNTNNNLVVYDNETGNPVLNTNQSNVFNYKEYNQALY FSGSKKINPKWETQIGLRFEATQTKGFSENLNQTNTNNYIKLFPTAYVTYVPNENNTFSLNYSRRIRRPDFDYLNPFVIK TSPYYYSEGNPYLKPSIIDNFEFSFIRNQKWVNSVYFSQVSDFGQELSIIDPVTNVTRSTPLNYADTYQIGFSTSYNFNK WSWWNSFTGFNLNYQNVKSKTDFINSIEGYNGYFYTNNDFTINHTKTLFLGVNYGLQLPGRYQIFNISTLHILDVSVKVL TLNKKLALTIVGEDLLNAQKPLISYQSNGIKTNAKSYSDTRGFRISLSYKFGNQKIQSKQSNFGNEEERNRAN
Sequences:
>Translated_793_residues MKKIILLVFVLLFKINSFGQQFELKGKVVNQNKTAVEFVIASLLKDNKILVSVSTDSLGNFEMKAAKGTYKLLLEQFGTE YLNKEIILDQNMDFGLIEIKETVQLESVTIQSRKKLVEQKVDRLVFNVENSVTAAGGTALDALKATPTVRVQNEVISIVG KGEILVMIDDRLQKMPQEDLAAFLKSIPSDNIKSIEVITTPPAKYDAEGNSGLINIKLKTAKANSWNANIGSAYTQKTYA GGNLNGLFTYNQDRLSLQTSVSKGTGKLLRTSESKIYYPNEVWKQQTANKTKNDLLSLSLGIDYKLSTKWSAGMSYLGSF NNRVSANNPFTTIYTDDAVNSYIASDVKAENAPKMNSVNLHNTFVLDSLGKNISVDLDYFNYQKDDYRFFFGNELDADKN VISNSFFSSTNSNLNKINNYSAAVDFTFPAVWANLSFGAKAFHTNTNNNLVVYDNETGNPVLNTNQSNVFNYKEYNQALY FSGSKKINPKWETQIGLRFEATQTKGFSENLNQTNTNNYIKLFPTAYVTYVPNENNTFSLNYSRRIRRPDFDYLNPFVIK TSPYYYSEGNPYLKPSIIDNFEFSFIRNQKWVNSVYFSQVSDFGQELSIIDPVTNVTRSTPLNYADTYQIGFSTSYNFNK WSWWNSFTGFNLNYQNVKSKTDFINSIEGYNGYFYTNNDFTINHTKTLFLGVNYGLQLPGRYQIFNISTLHILDVSVKVL TLNKKLALTIVGEDLLNAQKPLISYQSNGIKTNAKSYSDTRGFRISLSYKFGNQKIQSKQSNFGNEEERNRAN >Mature_793_residues MKKIILLVFVLLFKINSFGQQFELKGKVVNQNKTAVEFVIASLLKDNKILVSVSTDSLGNFEMKAAKGTYKLLLEQFGTE YLNKEIILDQNMDFGLIEIKETVQLESVTIQSRKKLVEQKVDRLVFNVENSVTAAGGTALDALKATPTVRVQNEVISIVG KGEILVMIDDRLQKMPQEDLAAFLKSIPSDNIKSIEVITTPPAKYDAEGNSGLINIKLKTAKANSWNANIGSAYTQKTYA GGNLNGLFTYNQDRLSLQTSVSKGTGKLLRTSESKIYYPNEVWKQQTANKTKNDLLSLSLGIDYKLSTKWSAGMSYLGSF NNRVSANNPFTTIYTDDAVNSYIASDVKAENAPKMNSVNLHNTFVLDSLGKNISVDLDYFNYQKDDYRFFFGNELDADKN VISNSFFSSTNSNLNKINNYSAAVDFTFPAVWANLSFGAKAFHTNTNNNLVVYDNETGNPVLNTNQSNVFNYKEYNQALY FSGSKKINPKWETQIGLRFEATQTKGFSENLNQTNTNNYIKLFPTAYVTYVPNENNTFSLNYSRRIRRPDFDYLNPFVIK TSPYYYSEGNPYLKPSIIDNFEFSFIRNQKWVNSVYFSQVSDFGQELSIIDPVTNVTRSTPLNYADTYQIGFSTSYNFNK WSWWNSFTGFNLNYQNVKSKTDFINSIEGYNGYFYTNNDFTINHTKTLFLGVNYGLQLPGRYQIFNISTLHILDVSVKVL TLNKKLALTIVGEDLLNAQKPLISYQSNGIKTNAKSYSDTRGFRISLSYKFGNQKIQSKQSNFGNEEERNRAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89811; Mature: 89811
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIILLVFVLLFKINSFGQQFELKGKVVNQNKTAVEFVIASLLKDNKILVSVSTDSLGN CHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCC FEMKAAKGTYKLLLEQFGTEYLNKEIILDQNMDFGLIEIKETVQLESVTIQSRKKLVEQK EEEEECCCHHHHHHHHHCHHHCCCEEEEECCCCCCEEEEECCEEEEEEEHHHHHHHHHHH VDRLVFNVENSVTAAGGTALDALKATPTVRVQNEVISIVGKGEILVMIDDRLQKMPQEDL HHHEEEECCCCEEECCCCHHHHHCCCCCEEEECEEEEEEECCEEEEEECHHHHHCCHHHH AAFLKSIPSDNIKSIEVITTPPAKYDAEGNSGLINIKLKTAKANSWNANIGSAYTQKTYA HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEC GGNLNGLFTYNQDRLSLQTSVSKGTGKLLRTSESKIYYPNEVWKQQTANKTKNDLLSLSL CCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCEEECCHHHHHHHHCCCCCCCEEEEEE GIDYKLSTKWSAGMSYLGSFNNRVSANNPFTTIYTDDAVNSYIASDVKAENAPKMNSVNL CCCEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCEEC HNTFVLDSLGKNISVDLDYFNYQKDDYRFFFGNELDADKNVISNSFFSSTNSNLNKINNY CCEEEEHHCCCCEEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCHHHCCCC SAAVDFTFPAVWANLSFGAKAFHTNTNNNLVVYDNETGNPVLNTNQSNVFNYKEYNQALY EEEEEEECHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCEECCHHHCCEEE FSGSKKINPKWETQIGLRFEATQTKGFSENLNQTNTNNYIKLFPTAYVTYVPNENNTFSL EECCCCCCCCCCCEEEEEEEECCCCCCHHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE NYSRRIRRPDFDYLNPFVIKTSPYYYSEGNPYLKPSIIDNFEFSFIRNQKWVNSVYFSQV EHHHCCCCCCCCCCCCEEEEECCEEECCCCCEECCCEECCCEEEEECCCHHHHHHHHHHH SDFGQELSIIDPVTNVTRSTPLNYADTYQIGFSTSYNFNKWSWWNSFTGFNLNYQNVKSK HHHCCCEEEECCHHHHHCCCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCHHHCCCH TDFINSIEGYNGYFYTNNDFTINHTKTLFLGVNYGLQLPGRYQIFNISTLHILDVSVKVL HHHHHCCCCCCCEEEECCCEEEECCEEEEEEECCCEECCCCEEEEEEEEEEEEEEEEEEE TLNKKLALTIVGEDLLNAQKPLISYQSNGIKTNAKSYSDTRGFRISLSYKFGNQKIQSKQ EECCEEEEEEECHHHHCCCCCEEEECCCCEECCCCCCCCCCCEEEEEEEECCCCHHHHHH SNFGNEEERNRAN HCCCCHHHHCCCC >Mature Secondary Structure MKKIILLVFVLLFKINSFGQQFELKGKVVNQNKTAVEFVIASLLKDNKILVSVSTDSLGN CHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCC FEMKAAKGTYKLLLEQFGTEYLNKEIILDQNMDFGLIEIKETVQLESVTIQSRKKLVEQK EEEEECCCHHHHHHHHHCHHHCCCEEEEECCCCCCEEEEECCEEEEEEEHHHHHHHHHHH VDRLVFNVENSVTAAGGTALDALKATPTVRVQNEVISIVGKGEILVMIDDRLQKMPQEDL HHHEEEECCCCEEECCCCHHHHHCCCCCEEEECEEEEEEECCEEEEEECHHHHHCCHHHH AAFLKSIPSDNIKSIEVITTPPAKYDAEGNSGLINIKLKTAKANSWNANIGSAYTQKTYA HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEC GGNLNGLFTYNQDRLSLQTSVSKGTGKLLRTSESKIYYPNEVWKQQTANKTKNDLLSLSL CCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCEEECCHHHHHHHHCCCCCCCEEEEEE GIDYKLSTKWSAGMSYLGSFNNRVSANNPFTTIYTDDAVNSYIASDVKAENAPKMNSVNL CCCEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCEEC HNTFVLDSLGKNISVDLDYFNYQKDDYRFFFGNELDADKNVISNSFFSSTNSNLNKINNY CCEEEEHHCCCCEEEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCHHHCCCC SAAVDFTFPAVWANLSFGAKAFHTNTNNNLVVYDNETGNPVLNTNQSNVFNYKEYNQALY EEEEEEECHHHHCCCCCCCEEEEECCCCCEEEEECCCCCCEEECCCCCEECCHHHCCEEE FSGSKKINPKWETQIGLRFEATQTKGFSENLNQTNTNNYIKLFPTAYVTYVPNENNTFSL EECCCCCCCCCCCEEEEEEEECCCCCCHHCCCCCCCCCEEEEEEEEEEEEECCCCCEEEE NYSRRIRRPDFDYLNPFVIKTSPYYYSEGNPYLKPSIIDNFEFSFIRNQKWVNSVYFSQV EHHHCCCCCCCCCCCCEEEEECCEEECCCCCEECCCEECCCEEEEECCCHHHHHHHHHHH SDFGQELSIIDPVTNVTRSTPLNYADTYQIGFSTSYNFNKWSWWNSFTGFNLNYQNVKSK HHHCCCEEEECCHHHHHCCCCCCCCEEEEEEEEECCCCCCEECCCCCCCCCCCHHHCCCH TDFINSIEGYNGYFYTNNDFTINHTKTLFLGVNYGLQLPGRYQIFNISTLHILDVSVKVL HHHHHCCCCCCCEEEECCCEEEECCEEEEEEECCCEECCCCEEEEEEEEEEEEEEEEEEE TLNKKLALTIVGEDLLNAQKPLISYQSNGIKTNAKSYSDTRGFRISLSYKFGNQKIQSKQ EECCEEEEEEECHHHHCCCCCEEEECCCCEECCCCCCCCCCCEEEEEEEECCCCHHHHHH SNFGNEEERNRAN HCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA