Definition Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession NC_009441
Length 6,096,872

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The map label for this gene is 146301693

Identifier: 146301693

GI number: 146301693

Start: 4726165

End: 4726767

Strand: Direct

Name: 146301693

Synonym: Fjoh_3955

Alternate gene names: NA

Gene position: 4726165-4726767 (Clockwise)

Preceding gene: 146301678

Following gene: 146301694

Centisome position: 77.52

GC content: 33.5

Gene sequence:

>603_bases
ATGATTTCATTGATAATTTTAAATAACTTTGAAATTCCTATGCAGTTAAAATTCCGCGAACATATTGAAAAAATTGTACC
CCTGACAGATGAAGAATTTTCATTTGTAAGTCAGCACTTTTCAGTAAAAAAATTCAAAAAACATCAGTTTTTAATTCAAA
AAGGAGATAAATCCGTTTATTCCTTTTTTATAGTTTCAGGTCTTTTAAAATTGGTTTACACCGATGATTCCGAAAAAGAA
CATATTGTTTCCTTTGCCATGGAAGACTGGTGGGAAAGCGATTATTATGCTTTCTTTACCCAGACCGAAGCAACAATGTC
GTTAGAATGTCTGGAAGATACCGAAGTACTTTGTTTTTCATTTGAAGATTATAAAAACTTATGCAGCGGTCTGCAGAAAA
TGGAACGCTTTTTTCTGGAAAAAGCCACTTTTGGATTCCTTAGTTCGCAGCGCCGTATTATTTCCTCAATGGCTTTCAGT
TCAAAAGAGCGTTACGAGCAGTTTCTTAAACAATATCCTTCACTAATCCAGCGAATTCCGAAAAGTTTAATTGCTTCTTA
TTTAGGTGTTTCTAGAGAAACTCTAAGCAGATTATCTTCTTGA

Upstream 100 bases:

>100_bases
AGCAGTTCGAGGCGGATATAAATTTGTTCTTACCTTATAGTCAATAAGGATTTTAGCATACAAAAATAAAAAAAATGAAT
TTTATAATCTTTAAAAAAAT

Downstream 100 bases:

>100_bases
TGTGATAAACCTCACATTTTATTCGTGAGAAATGTCAAGACCTGATTCCGTTTCTTATTTACAATTTTGCAGTATAAATT
TTAAATAAAAAAGGAATGGA

Product: cyclic nucleotide-binding protein

Products: NA

Alternate protein names: Catabolite Gene Activator Protein

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MISLIILNNFEIPMQLKFREHIEKIVPLTDEEFSFVSQHFSVKKFKKHQFLIQKGDKSVYSFFIVSGLLKLVYTDDSEKE
HIVSFAMEDWWESDYYAFFTQTEATMSLECLEDTEVLCFSFEDYKNLCSGLQKMERFFLEKATFGFLSSQRRIISSMAFS
SKERYEQFLKQYPSLIQRIPKSLIASYLGVSRETLSRLSS

Sequences:

>Translated_200_residues
MISLIILNNFEIPMQLKFREHIEKIVPLTDEEFSFVSQHFSVKKFKKHQFLIQKGDKSVYSFFIVSGLLKLVYTDDSEKE
HIVSFAMEDWWESDYYAFFTQTEATMSLECLEDTEVLCFSFEDYKNLCSGLQKMERFFLEKATFGFLSSQRRIISSMAFS
SKERYEQFLKQYPSLIQRIPKSLIASYLGVSRETLSRLSS
>Mature_200_residues
MISLIILNNFEIPMQLKFREHIEKIVPLTDEEFSFVSQHFSVKKFKKHQFLIQKGDKSVYSFFIVSGLLKLVYTDDSEKE
HIVSFAMEDWWESDYYAFFTQTEATMSLECLEDTEVLCFSFEDYKNLCSGLQKMERFFLEKATFGFLSSQRRIISSMAFS
SKERYEQFLKQYPSLIQRIPKSLIASYLGVSRETLSRLSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23608; Mature: 23608

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLIILNNFEIPMQLKFREHIEKIVPLTDEEFSFVSQHFSVKKFKKHQFLIQKGDKSVY
CEEEEEEECCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SFFIVSGLLKLVYTDDSEKEHIVSFAMEDWWESDYYAFFTQTEATMSLECLEDTEVLCFS
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEE
FEDYKNLCSGLQKMERFFLEKATFGFLSSQRRIISSMAFSSKERYEQFLKQYPSLIQRIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
KSLIASYLGVSRETLSRLSS
HHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MISLIILNNFEIPMQLKFREHIEKIVPLTDEEFSFVSQHFSVKKFKKHQFLIQKGDKSVY
CEEEEEEECCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
SFFIVSGLLKLVYTDDSEKEHIVSFAMEDWWESDYYAFFTQTEATMSLECLEDTEVLCFS
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCEEEEE
FEDYKNLCSGLQKMERFFLEKATFGFLSSQRRIISSMAFSSKERYEQFLKQYPSLIQRIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
KSLIASYLGVSRETLSRLSS
HHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA