| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301629
Identifier: 146301629
GI number: 146301629
Start: 4636710
End: 4637690
Strand: Direct
Name: 146301629
Synonym: Fjoh_3890
Alternate gene names: NA
Gene position: 4636710-4637690 (Clockwise)
Preceding gene: 146301626
Following gene: 146301630
Centisome position: 76.05
GC content: 35.37
Gene sequence:
>981_bases ATGAGAAAAGGACTTATGATCTTAGCAGTTTTACTGTTTGTATTTACTGTTTTGCAGTTTTGGAAACCCAAAGAAATCCA ATACAGCTCACCTGCAAAAAATTTAACGAACGTTCCTTCAGAGGTAAATACTATTTTAAGAAATTCTTGTTTTGACTGCC ATTCTAACTCTGTAAATCTTGCATGGTTTGATAAAATAACACCTGCAAATTTTATAGTCGATTCGCATATTAAAGATGGC CGAAAAGCATTGAATTTTTCTAATTGGGATACATTAGACAAGCAAAAACAGAGTGCTGTTATGTTTTATTCTTTCAATAA GATTCTATTAGGCGAAATGCCTCTTTTAAGTTACACAGCCCTTCATCCTTCAGCAAAATTAGACAGCCGCTCCATAACGG TTTTAAAAAATTATGTAAAAACCCTGGCAGCCCGAAAAACAAATCCAGAAGTATCATCTGTTTCTATATCAAAAGCAGAT GCAGTACATCATCCAGATAAAAAAATAACTGACTACAAGAAAGTAAAACCGTCATTAAATAAAATTTCATACATCCCAGA TTTTAGAAGCTGGAAAGCTATTAGTACAACTGACCGTTTTGACAATGGCAGCATGCGAATTATATACGGAAATAAAACCG CTGTAAAAGCGATTGCAGAACATCAAACAAATCCGTGGCCAGATGGTGCTATTTTCGCCAAAACTGCCTGGAAGCAAAAA ACAGAAGCTGATGGAAGTGTATCTCCCGGCGAATTCATTCAGGTCGAATTCATGATAAAGGATTCAAAAAAATATGAGTC TTCAAAAGGCTGGGGCTGGGCAAGATGGAAAGGAAAAGATTTAAAGCCGTATGGCGACAGCGTCAGCTTTGATCAGGAAT GTATTTCCTGTCATAGTCCTGTTAAAAACAATGATTATGTTTTTACATCACCCCTGCATCTTGATATCAATAAATTTAAT ATTTACAGCAAAAACCAATAA
Upstream 100 bases:
>100_bases AAGGTCCAAAATTTCCCTTTGAGCTTATTAAACCTTTTAAATACTGGCATTAAGCCTAATTTTGATTTGATTATTTATTC TAACTAAAAAAAATAAAACA
Downstream 100 bases:
>100_bases TTATGAAACCAATTCACTCCATCATAACAGCTCTTATAATTACACTTTACGGATGCAACACAAATAAAGACAATGTGAAT GAAAAAGCTTCTGTATCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: Cytochrome C; Signal Peptide
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MRKGLMILAVLLFVFTVLQFWKPKEIQYSSPAKNLTNVPSEVNTILRNSCFDCHSNSVNLAWFDKITPANFIVDSHIKDG RKALNFSNWDTLDKQKQSAVMFYSFNKILLGEMPLLSYTALHPSAKLDSRSITVLKNYVKTLAARKTNPEVSSVSISKAD AVHHPDKKITDYKKVKPSLNKISYIPDFRSWKAISTTDRFDNGSMRIIYGNKTAVKAIAEHQTNPWPDGAIFAKTAWKQK TEADGSVSPGEFIQVEFMIKDSKKYESSKGWGWARWKGKDLKPYGDSVSFDQECISCHSPVKNNDYVFTSPLHLDINKFN IYSKNQ
Sequences:
>Translated_326_residues MRKGLMILAVLLFVFTVLQFWKPKEIQYSSPAKNLTNVPSEVNTILRNSCFDCHSNSVNLAWFDKITPANFIVDSHIKDG RKALNFSNWDTLDKQKQSAVMFYSFNKILLGEMPLLSYTALHPSAKLDSRSITVLKNYVKTLAARKTNPEVSSVSISKAD AVHHPDKKITDYKKVKPSLNKISYIPDFRSWKAISTTDRFDNGSMRIIYGNKTAVKAIAEHQTNPWPDGAIFAKTAWKQK TEADGSVSPGEFIQVEFMIKDSKKYESSKGWGWARWKGKDLKPYGDSVSFDQECISCHSPVKNNDYVFTSPLHLDINKFN IYSKNQ >Mature_326_residues MRKGLMILAVLLFVFTVLQFWKPKEIQYSSPAKNLTNVPSEVNTILRNSCFDCHSNSVNLAWFDKITPANFIVDSHIKDG RKALNFSNWDTLDKQKQSAVMFYSFNKILLGEMPLLSYTALHPSAKLDSRSITVLKNYVKTLAARKTNPEVSSVSISKAD AVHHPDKKITDYKKVKPSLNKISYIPDFRSWKAISTTDRFDNGSMRIIYGNKTAVKAIAEHQTNPWPDGAIFAKTAWKQK TEADGSVSPGEFIQVEFMIKDSKKYESSKGWGWARWKGKDLKPYGDSVSFDQECISCHSPVKNNDYVFTSPLHLDINKFN IYSKNQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37066; Mature: 37066
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKGLMILAVLLFVFTVLQFWKPKEIQYSSPAKNLTNVPSEVNTILRNSCFDCHSNSVNL CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCEEE AWFDKITPANFIVDSHIKDGRKALNFSNWDTLDKQKQSAVMFYSFNKILLGEMPLLSYTA EEECCCCCCCEEEECCHHCHHHHCCCCCCCCHHHHHHCEEEEEECCCCEECCCCHHEEEE LHPSAKLDSRSITVLKNYVKTLAARKTNPEVSSVSISKADAVHHPDKKITDYKKVKPSLN CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHCHHHHHCCCHH KISYIPDFRSWKAISTTDRFDNGSMRIIYGNKTAVKAIAEHQTNPWPDGAIFAKTAWKQK HEECCCCCCCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEEHHHHCCC TEADGSVSPGEFIQVEFMIKDSKKYESSKGWGWARWKGKDLKPYGDSVSFDQECISCHSP CCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCC VKNNDYVFTSPLHLDINKFNIYSKNQ CCCCCEEEECCEEEEEEEEEEEECCC >Mature Secondary Structure MRKGLMILAVLLFVFTVLQFWKPKEIQYSSPAKNLTNVPSEVNTILRNSCFDCHSNSVNL CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCEEE AWFDKITPANFIVDSHIKDGRKALNFSNWDTLDKQKQSAVMFYSFNKILLGEMPLLSYTA EEECCCCCCCEEEECCHHCHHHHCCCCCCCCHHHHHHCEEEEEECCCCEECCCCHHEEEE LHPSAKLDSRSITVLKNYVKTLAARKTNPEVSSVSISKADAVHHPDKKITDYKKVKPSLN CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHCHHHHHCCCHH KISYIPDFRSWKAISTTDRFDNGSMRIIYGNKTAVKAIAEHQTNPWPDGAIFAKTAWKQK HEECCCCCCCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEEHHHHCCC TEADGSVSPGEFIQVEFMIKDSKKYESSKGWGWARWKGKDLKPYGDSVSFDQECISCHSP CCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHCCC VKNNDYVFTSPLHLDINKFNIYSKNQ CCCCCEEEECCEEEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA