| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is cbg-1 [H]
Identifier: 146301622
GI number: 146301622
Start: 4628317
End: 4630944
Strand: Direct
Name: cbg-1 [H]
Synonym: Fjoh_3883
Alternate gene names: 146301622
Gene position: 4628317-4630944 (Clockwise)
Preceding gene: 146301608
Following gene: 146301626
Centisome position: 75.91
GC content: 36.91
Gene sequence:
>2628_bases ATGAAGATGAAAAAAACGATATACTGCCTCATATTTTTAATTTGCTTTTATTCCTATTCACAAGACAAAAAGTATGATTT TCAATTTCAAAATCCGTCACTGAGTTTTGAACAGAGAGTTGATGATCTTGTGAGTCGTTTAACATTAGAAGAAAAAGTTT CTCAAATGCTAAATTCGTCACCTGAAATTGCAAGATTAGGTATTCCTGCTTATGACTGGTGGAACGAAACTTTGCATGGA GTTGCGAGAACTCCATTTAAAACAACGGTTTATCCTCAAGCTATTGGAATGGCGGCAACTTTCGATAAAAATTCACTCTT TACAATGGCCGACTACTCAGCTCTTGAAGGCAGGGCCATATACAATAAAGCGGTTGAACTTAAAAGAACCAACGAACGTT ATTTGGGACTCACCTACTGGACTCCAAATATCAATATTTTTCGTGATCCTCGCTGGGGACGCGGACAGGAAACCTATGGA GAAGATCCTTACTTAACAGCTGTCTTAGGTGATGCTTTTGTAAAAGGCCTACAGGGAGATGATCCTAAATACCTAAAAGC GGCCGCTTGTGCTAAACATTATGCTGTTCACAGCGGTCCGGAATCGCTAAGACATACTTTTGATGTTGATGTAACGCCTT ATGAACTTTGGGACACTTATCTTCCTGCTTTTAGAAAATTAATAACCGAATCGAATGTAGCCGGTGTTATGTGTGCTTAC AATGCATTTAGAACACAGCCTTGTTGTGCAAGTGACATTTTAATGAATGATATTCTGAGAAAAGAATGGAAATTTGACGG TTATGTTACTTCAGACTGCTGGGCGATTGACGATTTTTTTAAGAATCATAAAACACATCCCGATGCTGAATCTGCTGCTG CCGATGCCGTTTTTCATGGCACTGATATTGATTGCGGCACCGATGCTTATAAAGCACTTGTTCAGGCTGTTAAAAATGGA AAAATCAGCGAAAAACAGATTGATATTTCTGTAAAACGTCTTTTTATGATTCGTTTCAGACTTGGAATGTTTGATCCAGT ATCAATGGTCAAATATGCCCAAACCCCATCTTCTGTTTTAGAAAGCAAAGAACATCAGTTACATGCCTTAAAAATGGCAA GACAGTCGATCGTTTTACTTAAAAATGAAAAAAATATTCTTCCTTTAAATAAGAACCTAAAAAAGATTGTGGTTCTGGGA CCAAACGCCGACAATGCTATTTCAATATTGGGAAATTATAACGGAACTCCGTCTAAACTGACTACAGTTTTGCAGGGTAT TAAAGAGAAAGTGAGTCCTGATACAGAAGTTATTTATGAGAAAGCAGTTAACTTTACAAATGATACTTTACTGGTTTACA AAGACTTGAAGAATCAATACTCATACGAAGGCAAACAAGGTTTCAAAGCTGAATATTACAATAATACTACTCTTTCAGGA CAGCCTGAAGCGGTTAGAAGCGAATCAGAAATCAATAATTTCTGGCAGGAAGGAGAAGTTGTAATTCAAAACATCAAAGC AAATCATTTCTCTGCGCGTTATACTACAAACTTTACAGCAGATCAGGACGGTTCTGTTACTTTTGAACTTAAAGCCGATG ACGGTTATCGTTTTATAATAAACGGAAAAGAAGTTGTAAATGCCTGGCAGAAGAATAGATGGGGAGAAAAAACTTTTAAA CTTGAAACCAAAAAAAATACAGTTTATAAAATAGTATTGGAATATTGGCAGGGAGAAGGAAAAGCAGAAGTATCGCTGCA GACCGGAAATTTTGTAAAAACCAATTTTGCAGATTTAATTGAACATCATAAAAATGCTGACGCTTTTATTTTTGCCGGCG GTATTTCGCCACAGCTGGAAGGAGAAGAAATGCCTGTCGATTTTCCCGGATTTAAAGGAGGTGACCGCACCTCTATCCTG TTTCCGGAGGTGCAGACCAAACTTTTAAAAGCGCTTCAGTCTTCTGGAAAACCAGTAGTTTTTGCCATGATGACGGGAAG CGCAATAGCCATTCCGTGGGAAGCAGAAAATATTCCGGCAATATTAAATATCTGGTACGGCGGACAATCGGCAGGAACCG CAGCAGCCGATGTAATTTTTGGAGATTATAACCCGGCAGGAAGACTTCCTGTTACTTTTTACAAAAACGATTCAGATTTA CCTTCTTTTGTAGATTATAAAATGGATAATAAAACGTATCGTTATTTTAAAGGAACGCCGCTATACGGCTTTGGATACGG ACTGAGTTATACTTCATTTAAATACAGTGATTTAAAAACACCAGTTAAAATTAAAAAAGGACAGTCAGTTTCTATTTTGG TTAAAGTAGCAAATACCGGAAAAACAGAAGGCGAAGAAGTGGCGCAGCTGTACTTAATTAATCAGGATACAGCAATAAAA ACACCTTTGAAAAGTTTAAAAGGATTTGAACGATTCAATTTAAAACCTGGTGAAAATAAAACAATTACTTTTAATCTTTC TCCTGAAGATCTTTCGTATGTTACACCAGAAGGCAGTTTAAAGCAATATGAAGGCAAAATCAAAATTTCAATTGGAGGAA GTCAGCCAGATGAAAAACTGCTGACAAAAAGCAATGTTGTTTCTAAAATTATGCAATTAGAAAACTAA
Upstream 100 bases:
>100_bases TAATAATATCTAATTGGAAAAAATTTATTTTATTTACACAATCGGTTGCAATCACCTTTACTATCTAACCTTAATTCTTT TACACCAAAAAAATAATTCC
Downstream 100 bases:
>100_bases AAAACAACTGCAATAAAAAAGGTTTTAAGAATACTCAAAACCTTTTTTATTTAAGAATTTGTAGTTAAATCTAATCCGTG CATGAAATTATAATTTCAAG
Product: glycoside hydrolase family 3 protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 875; Mature: 875
Protein sequence:
>875_residues MKMKKTIYCLIFLICFYSYSQDKKYDFQFQNPSLSFEQRVDDLVSRLTLEEKVSQMLNSSPEIARLGIPAYDWWNETLHG VARTPFKTTVYPQAIGMAATFDKNSLFTMADYSALEGRAIYNKAVELKRTNERYLGLTYWTPNINIFRDPRWGRGQETYG EDPYLTAVLGDAFVKGLQGDDPKYLKAAACAKHYAVHSGPESLRHTFDVDVTPYELWDTYLPAFRKLITESNVAGVMCAY NAFRTQPCCASDILMNDILRKEWKFDGYVTSDCWAIDDFFKNHKTHPDAESAAADAVFHGTDIDCGTDAYKALVQAVKNG KISEKQIDISVKRLFMIRFRLGMFDPVSMVKYAQTPSSVLESKEHQLHALKMARQSIVLLKNEKNILPLNKNLKKIVVLG PNADNAISILGNYNGTPSKLTTVLQGIKEKVSPDTEVIYEKAVNFTNDTLLVYKDLKNQYSYEGKQGFKAEYYNNTTLSG QPEAVRSESEINNFWQEGEVVIQNIKANHFSARYTTNFTADQDGSVTFELKADDGYRFIINGKEVVNAWQKNRWGEKTFK LETKKNTVYKIVLEYWQGEGKAEVSLQTGNFVKTNFADLIEHHKNADAFIFAGGISPQLEGEEMPVDFPGFKGGDRTSIL FPEVQTKLLKALQSSGKPVVFAMMTGSAIAIPWEAENIPAILNIWYGGQSAGTAAADVIFGDYNPAGRLPVTFYKNDSDL PSFVDYKMDNKTYRYFKGTPLYGFGYGLSYTSFKYSDLKTPVKIKKGQSVSILVKVANTGKTEGEEVAQLYLINQDTAIK TPLKSLKGFERFNLKPGENKTITFNLSPEDLSYVTPEGSLKQYEGKIKISIGGSQPDEKLLTKSNVVSKIMQLEN
Sequences:
>Translated_875_residues MKMKKTIYCLIFLICFYSYSQDKKYDFQFQNPSLSFEQRVDDLVSRLTLEEKVSQMLNSSPEIARLGIPAYDWWNETLHG VARTPFKTTVYPQAIGMAATFDKNSLFTMADYSALEGRAIYNKAVELKRTNERYLGLTYWTPNINIFRDPRWGRGQETYG EDPYLTAVLGDAFVKGLQGDDPKYLKAAACAKHYAVHSGPESLRHTFDVDVTPYELWDTYLPAFRKLITESNVAGVMCAY NAFRTQPCCASDILMNDILRKEWKFDGYVTSDCWAIDDFFKNHKTHPDAESAAADAVFHGTDIDCGTDAYKALVQAVKNG KISEKQIDISVKRLFMIRFRLGMFDPVSMVKYAQTPSSVLESKEHQLHALKMARQSIVLLKNEKNILPLNKNLKKIVVLG PNADNAISILGNYNGTPSKLTTVLQGIKEKVSPDTEVIYEKAVNFTNDTLLVYKDLKNQYSYEGKQGFKAEYYNNTTLSG QPEAVRSESEINNFWQEGEVVIQNIKANHFSARYTTNFTADQDGSVTFELKADDGYRFIINGKEVVNAWQKNRWGEKTFK LETKKNTVYKIVLEYWQGEGKAEVSLQTGNFVKTNFADLIEHHKNADAFIFAGGISPQLEGEEMPVDFPGFKGGDRTSIL FPEVQTKLLKALQSSGKPVVFAMMTGSAIAIPWEAENIPAILNIWYGGQSAGTAAADVIFGDYNPAGRLPVTFYKNDSDL PSFVDYKMDNKTYRYFKGTPLYGFGYGLSYTSFKYSDLKTPVKIKKGQSVSILVKVANTGKTEGEEVAQLYLINQDTAIK TPLKSLKGFERFNLKPGENKTITFNLSPEDLSYVTPEGSLKQYEGKIKISIGGSQPDEKLLTKSNVVSKIMQLEN >Mature_875_residues MKMKKTIYCLIFLICFYSYSQDKKYDFQFQNPSLSFEQRVDDLVSRLTLEEKVSQMLNSSPEIARLGIPAYDWWNETLHG VARTPFKTTVYPQAIGMAATFDKNSLFTMADYSALEGRAIYNKAVELKRTNERYLGLTYWTPNINIFRDPRWGRGQETYG EDPYLTAVLGDAFVKGLQGDDPKYLKAAACAKHYAVHSGPESLRHTFDVDVTPYELWDTYLPAFRKLITESNVAGVMCAY NAFRTQPCCASDILMNDILRKEWKFDGYVTSDCWAIDDFFKNHKTHPDAESAAADAVFHGTDIDCGTDAYKALVQAVKNG KISEKQIDISVKRLFMIRFRLGMFDPVSMVKYAQTPSSVLESKEHQLHALKMARQSIVLLKNEKNILPLNKNLKKIVVLG PNADNAISILGNYNGTPSKLTTVLQGIKEKVSPDTEVIYEKAVNFTNDTLLVYKDLKNQYSYEGKQGFKAEYYNNTTLSG QPEAVRSESEINNFWQEGEVVIQNIKANHFSARYTTNFTADQDGSVTFELKADDGYRFIINGKEVVNAWQKNRWGEKTFK LETKKNTVYKIVLEYWQGEGKAEVSLQTGNFVKTNFADLIEHHKNADAFIFAGGISPQLEGEEMPVDFPGFKGGDRTSIL FPEVQTKLLKALQSSGKPVVFAMMTGSAIAIPWEAENIPAILNIWYGGQSAGTAAADVIFGDYNPAGRLPVTFYKNDSDL PSFVDYKMDNKTYRYFKGTPLYGFGYGLSYTSFKYSDLKTPVKIKKGQSVSILVKVANTGKTEGEEVAQLYLINQDTAIK TPLKSLKGFERFNLKPGENKTITFNLSPEDLSYVTPEGSLKQYEGKIKISIGGSQPDEKLLTKSNVVSKIMQLEN
Specific function: Involved in modifying a vir-inducing plant signal molecule. Hydrolyzes coniferin but not cellobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=421, Percent_Identity=31.5914489311164, Blast_Score=206, Evalue=5e-54,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 - InterPro: IPR011658 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 98575; Mature: 98575
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMKKTIYCLIFLICFYSYSQDKKYDFQFQNPSLSFEQRVDDLVSRLTLEEKVSQMLNSS CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC PEIARLGIPAYDWWNETLHGVARTPFKTTVYPQAIGMAATFDKNSLFTMADYSALEGRAI CCEEEECCCCHHHHHHHHHHHHCCCCCEEECHHHHCEEEEECCCCEEEEECCCCCCCCHH YNKAVELKRTNERYLGLTYWTPNINIFRDPRWGRGQETYGEDPYLTAVLGDAFVKGLQGD HHHHEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCC DPKYLKAAACAKHYAVHSGPESLRHTFDVDVTPYELWDTYLPAFRKLITESNVAGVMCAY CHHHHHHHHHHHHHHHCCCHHHHCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH NAFRTQPCCASDILMNDILRKEWKFDGYVTSDCWAIDDFFKNHKTHPDAESAAADAVFHG HHHCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEHHHHHHCCCCCCCHHHHHHHHEEEC TDIDCGTDAYKALVQAVKNGKISEKQIDISVKRLFMIRFRLGMFDPVSMVKYAQTPSSVL CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH ESKEHQLHALKMARQSIVLLKNEKNILPLNKNLKKIVVLGPNADNAISILGNYNGTPSKL HHHHHHHHHHHHHHHEEEEEECCCCEECCCCCCEEEEEECCCCCCEEEEEECCCCCHHHH TTVLQGIKEKVSPDTEVIYEKAVNFTNDTLLVYKDLKNQYSYEGKQGFKAEYYNNTTLSG HHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCEEEEECCCCCCC QPEAVRSESEINNFWQEGEVVIQNIKANHFSARYTTNFTADQDGSVTFELKADDGYRFII CCHHHHCHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEE NGKEVVNAWQKNRWGEKTFKLETKKNTVYKIVLEYWQGEGKAEVSLQTGNFVKTNFADLI CCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCEEECCHHHHH EHHKNADAFIFAGGISPQLEGEEMPVDFPGFKGGDRTSILFPEVQTKLLKALQSSGKPVV HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCEE FAMMTGSAIAIPWEAENIPAILNIWYGGQSAGTAAADVIFGDYNPAGRLPVTFYKNDSDL EEEECCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCC PSFVDYKMDNKTYRYFKGTPLYGFGYGLSYTSFKYSDLKTPVKIKKGQSVSILVKVANTG CHHHCEECCCCEEEEEECCCCEEECCCCCCCEEECCCCCCCEEEECCCCEEEEEEEECCC KTEGEEVAQLYLINQDTAIKTPLKSLKGFERFNLKPGENKTITFNLSPEDLSYVTPEGSL CCCCCCEEEEEEECCCCHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCEEECCCCCC KQYEGKIKISIGGSQPDEKLLTKSNVVSKIMQLEN EECCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKMKKTIYCLIFLICFYSYSQDKKYDFQFQNPSLSFEQRVDDLVSRLTLEEKVSQMLNSS CCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC PEIARLGIPAYDWWNETLHGVARTPFKTTVYPQAIGMAATFDKNSLFTMADYSALEGRAI CCEEEECCCCHHHHHHHHHHHHCCCCCEEECHHHHCEEEEECCCCEEEEECCCCCCCCHH YNKAVELKRTNERYLGLTYWTPNINIFRDPRWGRGQETYGEDPYLTAVLGDAFVKGLQGD HHHHEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCC DPKYLKAAACAKHYAVHSGPESLRHTFDVDVTPYELWDTYLPAFRKLITESNVAGVMCAY CHHHHHHHHHHHHHHHCCCHHHHCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEH NAFRTQPCCASDILMNDILRKEWKFDGYVTSDCWAIDDFFKNHKTHPDAESAAADAVFHG HHHCCCCCCHHHHHHHHHHHHHHCCCCEECCCCEEHHHHHHCCCCCCCHHHHHHHHEEEC TDIDCGTDAYKALVQAVKNGKISEKQIDISVKRLFMIRFRLGMFDPVSMVKYAQTPSSVL CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH ESKEHQLHALKMARQSIVLLKNEKNILPLNKNLKKIVVLGPNADNAISILGNYNGTPSKL HHHHHHHHHHHHHHHEEEEEECCCCEECCCCCCEEEEEECCCCCCEEEEEECCCCCHHHH TTVLQGIKEKVSPDTEVIYEKAVNFTNDTLLVYKDLKNQYSYEGKQGFKAEYYNNTTLSG HHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCEEEEECCCCCCC QPEAVRSESEINNFWQEGEVVIQNIKANHFSARYTTNFTADQDGSVTFELKADDGYRFII CCHHHHCHHHHHHHHHCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEE NGKEVVNAWQKNRWGEKTFKLETKKNTVYKIVLEYWQGEGKAEVSLQTGNFVKTNFADLI CCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCEEECCHHHHH EHHKNADAFIFAGGISPQLEGEEMPVDFPGFKGGDRTSILFPEVQTKLLKALQSSGKPVV HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCEE FAMMTGSAIAIPWEAENIPAILNIWYGGQSAGTAAADVIFGDYNPAGRLPVTFYKNDSDL EEEECCCEEEEECCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCC PSFVDYKMDNKTYRYFKGTPLYGFGYGLSYTSFKYSDLKTPVKIKKGQSVSILVKVANTG CHHHCEECCCCEEEEEECCCCEEECCCCCCCEEECCCCCCCEEEECCCCEEEEEEEECCC KTEGEEVAQLYLINQDTAIKTPLKSLKGFERFNLKPGENKTITFNLSPEDLSYVTPEGSL CCCCCCEEEEEEECCCCHHHHHHHHHCCCHHCCCCCCCCCEEEEEECCCCCEEECCCCCC KQYEGKIKISIGGSQPDEKLLTKSNVVSKIMQLEN EECCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537792 [H]