Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
---|---|
Accession | NC_009441 |
Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146301594
Identifier: 146301594
GI number: 146301594
Start: 4567864
End: 4568718
Strand: Reverse
Name: 146301594
Synonym: Fjoh_3855
Alternate gene names: NA
Gene position: 4568718-4567864 (Counterclockwise)
Preceding gene: 146301595
Following gene: 146301593
Centisome position: 74.94
GC content: 30.76
Gene sequence:
>855_bases ATGAAAAAAACTTTACTTTTTTTAGCTTTTACGATGATTACAACCCTATCGTCTGCTCAATATACAATCTGGGAAGATGA TTTTGATGATTCTGATGCTTCAGACTGGATTTTATTAGACCAGGATGGAAACGGCAGTAACTGGACAGCAAGAAAAAATA TTCAGTTTGATGCCAATACAGGAGCTATTGTAGGAGGAACTTATGATGTTTTAGGAACTTATAATATAGATCTAACCAAT GGTGGAAGCCAATTAGAAACAAGCGAAAATAATCTTGCAATAAGTCCTGTTTTTGACACATCGTTTTATTCAGGAAAAAT TACATTAACATTAAACGCACAGCCAAGTGTTTATGACACTAATGAGGATATTTTAATTTATGGTTCTACATCACCTGATC CTGCTTCATTTACGCTTATAAAAACGGTTACTTTAGAAAGAACAACAATAGAAGATGCAGAGTTTAAAGATTATACAGTA GATATTTCACAATTTGCAGGTAAAACTGAAGTATACATTGCTTTTGGAACTATTTCTAATCCTTTTATTGGTTATGAAAT TGATAAAATTTCAATTATGGCCGAAGCTTTATTAGGAACCGATGATAATACTTTAAAATCGTCATTATGTTATTTAAAAC AAAACCCTGTTCAGGACAATCTCGTTTTAGAAATAGCAGAAGAATACAAAAACGAAGAAACACTTTTAAAAATATATAAT ACAAGCGGTGTTTTACTAAAAGAGTCTTCTTACAGACCAGAAGGATTATCTGTCAGCGATTTATCACAAGGCATTTATTT CCTTTCTGTAAATAATAATGGTGCATCAAAAAAAATAAAATTTATCAAAAAGTAA
Upstream 100 bases:
>100_bases CTCTTGGACAAAATTTTCTAATTTCTAATTAGATAAAAACAGCTTACTTACATAAATACTGCATGGGCAGAGAAATCTGC CCATATTTAAAATAAAAAAT
Downstream 100 bases:
>100_bases TTTGATTTTCAAATCAACTTATGCTAACAAAAACAAACATGAAGAATTTATTGCCGGGTTTATTCATTTTTACAATTTTA GTTACTCTTGTAATATCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MKKTLLFLAFTMITTLSSAQYTIWEDDFDDSDASDWILLDQDGNGSNWTARKNIQFDANTGAIVGGTYDVLGTYNIDLTN GGSQLETSENNLAISPVFDTSFYSGKITLTLNAQPSVYDTNEDILIYGSTSPDPASFTLIKTVTLERTTIEDAEFKDYTV DISQFAGKTEVYIAFGTISNPFIGYEIDKISIMAEALLGTDDNTLKSSLCYLKQNPVQDNLVLEIAEEYKNEETLLKIYN TSGVLLKESSYRPEGLSVSDLSQGIYFLSVNNNGASKKIKFIKK
Sequences:
>Translated_284_residues MKKTLLFLAFTMITTLSSAQYTIWEDDFDDSDASDWILLDQDGNGSNWTARKNIQFDANTGAIVGGTYDVLGTYNIDLTN GGSQLETSENNLAISPVFDTSFYSGKITLTLNAQPSVYDTNEDILIYGSTSPDPASFTLIKTVTLERTTIEDAEFKDYTV DISQFAGKTEVYIAFGTISNPFIGYEIDKISIMAEALLGTDDNTLKSSLCYLKQNPVQDNLVLEIAEEYKNEETLLKIYN TSGVLLKESSYRPEGLSVSDLSQGIYFLSVNNNGASKKIKFIKK >Mature_284_residues MKKTLLFLAFTMITTLSSAQYTIWEDDFDDSDASDWILLDQDGNGSNWTARKNIQFDANTGAIVGGTYDVLGTYNIDLTN GGSQLETSENNLAISPVFDTSFYSGKITLTLNAQPSVYDTNEDILIYGSTSPDPASFTLIKTVTLERTTIEDAEFKDYTV DISQFAGKTEVYIAFGTISNPFIGYEIDKISIMAEALLGTDDNTLKSSLCYLKQNPVQDNLVLEIAEEYKNEETLLKIYN TSGVLLKESSYRPEGLSVSDLSQGIYFLSVNNNGASKKIKFIKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31423; Mature: 31423
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTLLFLAFTMITTLSSAQYTIWEDDFDDSDASDWILLDQDGNGSNWTARKNIQFDANT CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCC GAIVGGTYDVLGTYNIDLTNGGSQLETSENNLAISPVFDTSFYSGKITLTLNAQPSVYDT CEEECCCEEEEEEEEEEECCCCCEEEECCCCEEEEEEECCCEECCEEEEEEECCCCEEEC NEDILIYGSTSPDPASFTLIKTVTLERTTIEDAEFKDYTVDISQFAGKTEVYIAFGTISN CCCEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEEHHHHCCCEEEEEEEECCCC PFIGYEIDKISIMAEALLGTDDNTLKSSLCYLKQNPVQDNLVLEIAEEYKNEETLLKIYN CEEEEEEHHHHEEEHHHHCCCCCHHHHHHHEEECCCCCCHHHEEEHHHHCCCCEEEEEEC TSGVLLKESSYRPEGLSVSDLSQGIYFLSVNNNGASKKIKFIKK CCCEEEECCCCCCCCCCHHHHHCCEEEEEECCCCCCEEEEEECC >Mature Secondary Structure MKKTLLFLAFTMITTLSSAQYTIWEDDFDDSDASDWILLDQDGNGSNWTARKNIQFDANT CCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCC GAIVGGTYDVLGTYNIDLTNGGSQLETSENNLAISPVFDTSFYSGKITLTLNAQPSVYDT CEEECCCEEEEEEEEEEECCCCCEEEECCCCEEEEEEECCCEECCEEEEEEECCCCEEEC NEDILIYGSTSPDPASFTLIKTVTLERTTIEDAEFKDYTVDISQFAGKTEVYIAFGTISN CCCEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEEHHHHCCCEEEEEEEECCCC PFIGYEIDKISIMAEALLGTDDNTLKSSLCYLKQNPVQDNLVLEIAEEYKNEETLLKIYN CEEEEEEHHHHEEEHHHHCCCCCHHHHHHHEEECCCCCCHHHEEEHHHHCCCCEEEEEEC TSGVLLKESSYRPEGLSVSDLSQGIYFLSVNNNGASKKIKFIKK CCCEEEECCCCCCCCCCHHHHHCCEEEEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA