BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is ykvO [H]

Identifier: 146301586

GI number: 146301586

Start: 4560611

End: 4561354

Strand: Direct

Name: ykvO [H]

Synonym: Fjoh_3847

Alternate gene names: 146301586

Gene position: 4560611-4561354 (Clockwise)

Preceding gene: 146301584

Following gene: 146301588

Centisome position: 74.8

GC content: 37.1

Gene sequence:

>744_bases
ATGGATTTTACCAATAAAAATGTCCTTATTACCGGAGGTACTACAGGAATTGGATTAGCAACAGCAAAAGAGTTTATAAA
AGCAGGCGCAAATGTTTGGATTACCGGAAGAAACAGCGAAAACCTTGAAAAAGCTGCTAACGAAATTAATAGTCAGAAAT
TAAAAACGATAGTTTCTGATACTGCCAATTTATCTGATCTTTCTCTTTTAGAAAAAGCTTTCGCAGAAAACAACGCTCCA
TTAGATGTTCTTTTCTTAAACGCTGGAATAGCAAGATTTACTTCAATCGAAGATGTAACTGAAGCCGATTTTGATGCACA
GTTTAATACCAATGTGAAAGGTCATTTTTTCACACTTCAAAAATTACTGCCGCATTTAGCCGAAGGTTCATCAGTAATAT
TTACTTCCTCTACAGTGGCGACAGCTTCTAATTTAGGAAGCAGTATATATTCGGCTACCAAAGGAGCTTTGAACAAAATT
GCTCAAATTGCGGCAAATGAATTAGCAGGCAGAAAAATACGCGTTAATATTGTAAGTCCCGGTCCGGTTTCTACACCTGG
ACTTCATAATGCAGTACCTGAGGAAGCAAAAGAATATCTGGCGGGTGCTACAGCAATGCAGAGACTAGGAGATTCATCTG
AAATAGCCAAAACTGTATTATTTCTTGCTTCAGAAAATGCAAGCTTTATTACTGGAACAGAGCTTTTGGCAGACGGAGGA
TATATAAACTATGCTCTAAAATAA

Upstream 100 bases:

>100_bases
CTTGGTTACTCAAATGTTACTGTTACTTTTAGTTACAAAGTAACAATAATAAACTTCACTAAACTAACTTTGCCTGTATA
AATTTTAAAACATACTAAAA

Downstream 100 bases:

>100_bases
ATTGATCATTAAATATTAAATTACGATAATTTGATATAATTAAAATGCTAAATCATGTGATTTAGCATTTTTTATTTAGA
TTGATGCAGCTCTCAAATTA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDFTNKNVLITGGTTGIGLATAKEFIKAGANVWITGRNSENLEKAANEINSQKLKTIVSDTANLSDLSLLEKAFAENNAP
LDVLFLNAGIARFTSIEDVTEADFDAQFNTNVKGHFFTLQKLLPHLAEGSSVIFTSSTVATASNLGSSIYSATKGALNKI
AQIAANELAGRKIRVNIVSPGPVSTPGLHNAVPEEAKEYLAGATAMQRLGDSSEIAKTVLFLASENASFITGTELLADGG
YINYALK

Sequences:

>Translated_247_residues
MDFTNKNVLITGGTTGIGLATAKEFIKAGANVWITGRNSENLEKAANEINSQKLKTIVSDTANLSDLSLLEKAFAENNAP
LDVLFLNAGIARFTSIEDVTEADFDAQFNTNVKGHFFTLQKLLPHLAEGSSVIFTSSTVATASNLGSSIYSATKGALNKI
AQIAANELAGRKIRVNIVSPGPVSTPGLHNAVPEEAKEYLAGATAMQRLGDSSEIAKTVLFLASENASFITGTELLADGG
YINYALK
>Mature_247_residues
MDFTNKNVLITGGTTGIGLATAKEFIKAGANVWITGRNSENLEKAANEINSQKLKTIVSDTANLSDLSLLEKAFAENNAP
LDVLFLNAGIARFTSIEDVTEADFDAQFNTNVKGHFFTLQKLLPHLAEGSSVIFTSSTVATASNLGSSIYSATKGALNKI
AQIAANELAGRKIRVNIVSPGPVSTPGLHNAVPEEAKEYLAGATAMQRLGDSSEIAKTVLFLASENASFITGTELLADGG
YINYALK

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=31.9672131147541, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=30.6451612903226, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=29.8319327731092, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI66933014, Length=225, Percent_Identity=29.3333333333333, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=31.0756972111554, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=29.0322580645161, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=30.4812834224599, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI10190704, Length=255, Percent_Identity=28.6274509803922, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI19923817, Length=243, Percent_Identity=25.9259259259259, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=30.939226519337, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7706523, Length=154, Percent_Identity=33.1168831168831, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4503817, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI59889578, Length=234, Percent_Identity=29.9145299145299, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=27.1653543307087, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI20149619, Length=227, Percent_Identity=29.0748898678414, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI225579078, Length=115, Percent_Identity=34.7826086956522, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=31.6, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=32.6693227091633, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=30.2904564315353, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=30.6451612903226, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=32.6530612244898, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=29.0196078431373, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790717, Length=242, Percent_Identity=27.6859504132231, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=30.1204819277108, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788459, Length=240, Percent_Identity=29.1666666666667, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=27.6422764227642, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=30.0411522633745, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=30.1075268817204, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=27.6422764227642, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=28.1767955801105, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=33.1983805668016, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=32.1285140562249, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17560676, Length=244, Percent_Identity=31.1475409836066, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=33.5907335907336, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=238, Percent_Identity=30.2521008403361, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=248, Percent_Identity=31.8548387096774, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=29.1666666666667, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=31.5175097276265, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=259, Percent_Identity=31.6602316602317, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=34.2205323193916, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=30.5555555555556, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.5660377358491, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=29.6875, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=29.4573643410853, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=31.9702602230483, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=29.5719844357977, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=29.8449612403101, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=256, Percent_Identity=29.296875, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=31.4393939393939, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=30.7984790874525, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=259, Percent_Identity=29.3436293436293, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=32.0754716981132, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=28.8461538461538, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=30.6513409961686, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=31.0606060606061, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=249, Percent_Identity=30.1204819277108, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71992402, Length=158, Percent_Identity=36.0759493670886, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=25.6916996047431, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=28.6274509803922, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=30.3664921465969, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17532805, Length=143, Percent_Identity=34.2657342657343, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=185, Percent_Identity=29.1891891891892, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193207620, Length=220, Percent_Identity=28.1818181818182, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=239, Percent_Identity=27.6150627615063, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=26.8292682926829, Blast_Score=76, Evalue=6e-15,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=35.2, Blast_Score=124, Evalue=5e-29,
Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=35.2459016393443, Blast_Score=124, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=35.6, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=29.5081967213115, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=31.9838056680162, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=31.1740890688259, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=33.8709677419355, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=30.8, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356301, Length=208, Percent_Identity=27.8846153846154, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17737361, Length=226, Percent_Identity=30.0884955752212, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26057; Mature: 26057

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTNKNVLITGGTTGIGLATAKEFIKAGANVWITGRNSENLEKAANEINSQKLKTIVSD
CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHC
TANLSDLSLLEKAFAENNAPLDVLFLNAGIARFTSIEDVTEADFDAQFNTNVKGHFFTLQ
CCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCHHHHHHCCCCCEECCCCCHHHHHHH
KLLPHLAEGSSVIFTSSTVATASNLGSSIYSATKGALNKIAQIAANELAGRKIRVNIVSP
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
GPVSTPGLHNAVPEEAKEYLAGATAMQRLGDSSEIAKTVLFLASENASFITGTELLADGG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEHHHHHCCCC
YINYALK
EEEEEEC
>Mature Secondary Structure
MDFTNKNVLITGGTTGIGLATAKEFIKAGANVWITGRNSENLEKAANEINSQKLKTIVSD
CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHC
TANLSDLSLLEKAFAENNAPLDVLFLNAGIARFTSIEDVTEADFDAQFNTNVKGHFFTLQ
CCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCHHHHHHCCCCCEECCCCCHHHHHHH
KLLPHLAEGSSVIFTSSTVATASNLGSSIYSATKGALNKIAQIAANELAGRKIRVNIVSP
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECC
GPVSTPGLHNAVPEEAKEYLAGATAMQRLGDSSEIAKTVLFLASENASFITGTELLADGG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEHHHHHCCCC
YINYALK
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]