BacMap

Definition	Flavobacterium johnsoniae UW101 chromosome, complete genome.
Accession	NC_009441
Length	6,096,872

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The map label for this gene is ydfG [C]

Identifier: 146301521

GI number: 146301521

Start: 4484831

End: 4485640

Strand: Direct

Name: ydfG [C]

Synonym: Fjoh_3782

Alternate gene names: 146301521

Gene position: 4484831-4485640 (Clockwise)

Preceding gene: 146301520

Following gene: 146301522

Centisome position: 73.56

GC content: 36.79

Gene sequence:

>810_bases
ATGCGCAATACTCAAACAATAAATAGTAATTACTTTATAAAAAAATATAGAATGGAAAAATTAACAGATTATTTTGGACA
GAACATAAAAGATAAAAAAATAGTGATAACAGGAGGAACAACCGGAATAGGAAAAGCAATTGCCGATGTACTGGTATCAC
TTGGCGGCAGGGTGCTGATTTTTGGAAGAGATGAGAAGGATTTCAAAAATGCCGTTGCAGATATTCAAAAACAATTTCCC
GGAAGCGAAGTTTACGGTACTCCAGCAGATGTCACTAAAAAAGAAGATATTCAGAAAATCTTAGAAATAGCAGACAATGA
ACTCGGCGGCATTGACATCCTCATCAACAATGCGGCATTGGGAGCTCCAGGAATAACTAACGAAAGCTATGATGATTATA
AATATATTATAGATACCAATATTACCGGTTATCTCGCATTTGCTCAGGAAGCAGCATCAAGGATGAAGCAGCAAAAATCA
GGACATATTATCAATATCGGATCGATGAGTGCAGAAAGTAAAGAAGCAAAAAGTACAATATATGTAGCAACTAAATCTGC
TATAAGAGGATTCAGCACTTCGCTGCGAAAGGAATTAAATCCATTAGGAATTAAAGTTTCATTAATTGAACCGGGAGCGG
TGACAAGCGACATGCAGCCCGGAACCAATGCAGAACAGGAAGAGAAGATAGAAAAAATGGAGATGCTTGAAGCATACGAT
ATTGCAATGAGTACATTATTTTGTCTTTCCCAGCCCAAAAGATGTGATATTGTAACAATGCAGATCAGACCTCATCTTCA
GCTTATTTAA

Upstream 100 bases:

>100_bases
CCACAAGACTGCAGAAATACATGACTATAAAATTTCAGGCAGAGGTCTGGTTAAAATTAAATGGGAATATTGAATCAAGG
CAAAGTATCAAAATGGCAGA

Downstream 100 bases:

>100_bases
TTGAACCAGGAAGCATTGCTGATTTTTATAAAGCAGCTAAAATGTTCCCCAAAGAAAAATAGATTTAATTTTTATTCAAT
ATGATCCTAAAAATTGAAAC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MRNTQTINSNYFIKKYRMEKLTDYFGQNIKDKKIVITGGTTGIGKAIADVLVSLGGRVLIFGRDEKDFKNAVADIQKQFP
GSEVYGTPADVTKKEDIQKILEIADNELGGIDILINNAALGAPGITNESYDDYKYIIDTNITGYLAFAQEAASRMKQQKS
GHIINIGSMSAESKEAKSTIYVATKSAIRGFSTSLRKELNPLGIKVSLIEPGAVTSDMQPGTNAEQEEKIEKMEMLEAYD
IAMSTLFCLSQPKRCDIVTMQIRPHLQLI

Sequences:

>Translated_269_residues
MRNTQTINSNYFIKKYRMEKLTDYFGQNIKDKKIVITGGTTGIGKAIADVLVSLGGRVLIFGRDEKDFKNAVADIQKQFP
GSEVYGTPADVTKKEDIQKILEIADNELGGIDILINNAALGAPGITNESYDDYKYIIDTNITGYLAFAQEAASRMKQQKS
GHIINIGSMSAESKEAKSTIYVATKSAIRGFSTSLRKELNPLGIKVSLIEPGAVTSDMQPGTNAEQEEKIEKMEMLEAYD
IAMSTLFCLSQPKRCDIVTMQIRPHLQLI
>Mature_269_residues
MRNTQTINSNYFIKKYRMEKLTDYFGQNIKDKKIVITGGTTGIGKAIADVLVSLGGRVLIFGRDEKDFKNAVADIQKQFP
GSEVYGTPADVTKKEDIQKILEIADNELGGIDILINNAALGAPGITNESYDDYKYIIDTNITGYLAFAQEAASRMKQQKS
GHIINIGSMSAESKEAKSTIYVATKSAIRGFSTSLRKELNPLGIKVSLIEPGAVTSDMQPGTNAEQEEKIEKMEMLEAYD
IAMSTLFCLSQPKRCDIVTMQIRPHLQLI

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=227, Percent_Identity=29.5154185022026, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI109715829, Length=254, Percent_Identity=29.5275590551181, Blast_Score=101, Evalue=6e-22,
Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=28.643216080402, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI32483357, Length=188, Percent_Identity=29.2553191489362, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI83715985, Length=191, Percent_Identity=27.2251308900524, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=27.1794871794872, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI22507405, Length=201, Percent_Identity=30.3482587064677, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI126723191, Length=187, Percent_Identity=28.8770053475936, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI157739938, Length=195, Percent_Identity=28.2051282051282, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI38348362, Length=174, Percent_Identity=25.8620689655172, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI5031737, Length=195, Percent_Identity=27.1794871794872, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI150247226, Length=217, Percent_Identity=29.9539170506912, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI7706318, Length=231, Percent_Identity=25.974025974026, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=27.319587628866, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI38424085, Length=174, Percent_Identity=25.8620689655172, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI32455239, Length=218, Percent_Identity=27.9816513761468, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI5031765, Length=218, Percent_Identity=27.9816513761468, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI7657478, Length=172, Percent_Identity=28.4883720930233, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI59889578, Length=170, Percent_Identity=25.8823529411765, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI19923817, Length=194, Percent_Identity=25.7731958762887, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4503817, Length=182, Percent_Identity=24.7252747252747, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31542939, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI40548397, Length=198, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI214010158, Length=198, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI214010156, Length=198, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI22758144, Length=198, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI1787820, Length=241, Percent_Identity=29.045643153527, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI87082160, Length=219, Percent_Identity=32.4200913242009, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787335, Length=209, Percent_Identity=30.1435406698565, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787905, Length=224, Percent_Identity=29.0178571428571, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1790717, Length=199, Percent_Identity=28.643216080402, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786812, Length=194, Percent_Identity=25.7731958762887, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789378, Length=201, Percent_Identity=27.363184079602, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367365, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI2367175, Length=227, Percent_Identity=25.1101321585903, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082100, Length=207, Percent_Identity=28.5024154589372, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788459, Length=187, Percent_Identity=28.3422459893048, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789208, Length=218, Percent_Identity=27.5229357798165, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786701, Length=215, Percent_Identity=28.3720930232558, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=208, Percent_Identity=29.3269230769231, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=209, Percent_Identity=25.8373205741627, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=204, Percent_Identity=25.9803921568627, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=232, Percent_Identity=28.0172413793103, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=226, Percent_Identity=26.5486725663717, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=228, Percent_Identity=29.8245614035088, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=192, Percent_Identity=28.125, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=198, Percent_Identity=23.7373737373737, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560176, Length=191, Percent_Identity=30.8900523560209, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=204, Percent_Identity=25, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=238, Percent_Identity=25.2100840336134, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=23.9795918367347, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=238, Percent_Identity=25.2100840336134, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=186, Percent_Identity=26.3440860215054, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=221, Percent_Identity=28.5067873303167, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17559552, Length=196, Percent_Identity=31.1224489795918, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=189, Percent_Identity=28.042328042328, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI212646214, Length=195, Percent_Identity=28.7179487179487, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=193, Percent_Identity=25.9067357512953, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=186, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=190, Percent_Identity=27.3684210526316, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=192, Percent_Identity=27.6041666666667, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=208, Percent_Identity=25.9615384615385, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=190, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=24.1935483870968, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=23.936170212766, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=28.4263959390863, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=255, Percent_Identity=30.5882352941176, Blast_Score=105, Evalue=9e-24,
Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI281364494, Length=249, Percent_Identity=28.1124497991968, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI28571526, Length=208, Percent_Identity=28.3653846153846, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=27.0491803278689, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=28.3400809716599, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=28.3400809716599, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24641232, Length=252, Percent_Identity=26.1904761904762, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24641388, Length=245, Percent_Identity=29.3877551020408, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357041, Length=208, Percent_Identity=27.8846153846154, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28571387, Length=247, Percent_Identity=27.5303643724696, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI23397609, Length=204, Percent_Identity=26.9607843137255, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24663911, Length=249, Percent_Identity=25.7028112449799, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21355319, Length=190, Percent_Identity=28.9473684210526, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI21355631, Length=189, Percent_Identity=29.1005291005291, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007234, Length=252, Percent_Identity=25.7936507936508, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=25.5, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24644339, Length=208, Percent_Identity=26.4423076923077, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007238, Length=203, Percent_Identity=27.0935960591133, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281364892, Length=174, Percent_Identity=27.0114942528736, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17737361, Length=203, Percent_Identity=24.6305418719212, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=26.0162601626016, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356301, Length=207, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24581726, Length=236, Percent_Identity=28.3898305084746, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24584752, Length=185, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24640492, Length=189, Percent_Identity=24.3386243386243, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161076933, Length=228, Percent_Identity=25.8771929824561, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584748, Length=228, Percent_Identity=25.8771929824561, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24584744, Length=236, Percent_Identity=26.6949152542373, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28574402, Length=236, Percent_Identity=26.6949152542373, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29688; Mature: 29688

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNTQTINSNYFIKKYRMEKLTDYFGQNIKDKKIVITGGTTGIGKAIADVLVSLGGRVLI
CCCCEECCCCEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
FGRDEKDFKNAVADIQKQFPGSEVYGTPADVTKKEDIQKILEIADNELGGIDILINNAAL
EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
GAPGITNESYDDYKYIIDTNITGYLAFAQEAASRMKQQKSGHIINIGSMSAESKEAKSTI
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHCCCEE
YVATKSAIRGFSTSLRKELNPLGIKVSLIEPGAVTSDMQPGTNAEQEEKIEKMEMLEAYD
EEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
IAMSTLFCLSQPKRCDIVTMQIRPHLQLI
HHHHHHHHHCCCCCCCEEEEEECCCEECC
>Mature Secondary Structure
MRNTQTINSNYFIKKYRMEKLTDYFGQNIKDKKIVITGGTTGIGKAIADVLVSLGGRVLI
CCCCEECCCCEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
FGRDEKDFKNAVADIQKQFPGSEVYGTPADVTKKEDIQKILEIADNELGGIDILINNAAL
EECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCC
GAPGITNESYDDYKYIIDTNITGYLAFAQEAASRMKQQKSGHIINIGSMSAESKEAKSTI
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHCCCEE
YVATKSAIRGFSTSLRKELNPLGIKVSLIEPGAVTSDMQPGTNAEQEEKIEKMEMLEAYD
EEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
IAMSTLFCLSQPKRCDIVTMQIRPHLQLI
HHHHHHHHHCCCCCCCEEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]