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The map label for this gene is pchR [H]

Identifier: 146301480

GI number: 146301480

Start: 4436778

End: 4437734

Strand: Direct

Name: pchR [H]

Synonym: Fjoh_3739

Alternate gene names: 146301480

Gene position: 4436778-4437734 (Clockwise)

Preceding gene: 146301475

Following gene: 146301484

Centisome position: 72.77

GC content: 31.97

Gene sequence:

>957_bases
ATGAAATTACATATAAAGGAAGAATTCGGTTTCTTAGCGGGTTTTGCCGATTTATTAGGCACAGAAGTAAACAATGGAAT
ATTAGTGATACCCGATAATAAAGGGAAAGGCTATTTAAGAGGATTTAGATTAGACAATTCCATAAATATGCTTGTAAGTT
TTTATGAGTTTAATGACAATGTGCTTGCGAAAAGACTAGGAGGTCAAAATACACTGAATCGAATACTATTTTCTTTCAAT
ACTATTTTTCCTGATGCTGATTCAAAAAACAAATATTCAGGAAATCTTCCTTCAATTCAAATTTTTAAGGGAAAACTTAA
TATTGAAACATTCTATCCGGGCAGAACTAAATTCAATTCTATTTTCATTGGAATTGATTCCGATAAATTAGCCAAAACTC
TAGGAGTGAATATTCACAATGAAATTTTCAGAAATATTATTACCAGCGAACAGCCGATTTTATTTGAAGAGCTGCTTTCG
CCAAAAATTCAGCAGGTGGCCATGGAAATTATTCAGACTGACGTTCCGGATTCCCTGACTGATTTCTTTTTTAAAATCAA
AGCCGAAGAATTAATATGCCTGACTCTAAAAGAGCTTTTTAAAAGAGAAAATCCAACTACACACGCACTAAATCAAATTG
ATGTTCAAAAAATTTATAAGGTGAGAGATCTAATTTTGAATAACATTGCTGTGGCTCCAGTTATAAAACACCTGGCTTCA
GAAGTAGGGATGAGCGAATCAAAGTTTAAAAGATTATTTAAACAAATTTTTGGCGACAGTTTGTTTAGCTATTACCAAAA
GTTCAGAATGAAGGAAGCTTCACGATTGCTAAAAGAAAATAAAATGACTGTTTCAGAGGTTGGCTTTAAGATGGGTTTTT
CTAATTTAAGTCATTTTGCCAAAGCTTTTGAACAACATATTGGAATAAAGCCAAAATCATTCCAAAAACTAAAATAG

Upstream 100 bases:

>100_bases
ATTTTGAATCGTTTAAAATAATTTTCCGACAAAGTTATCTAGTCAATAATGATTAAAATAGCTACATTTGGCACAATAAT
AGCTCTAAAAGGTCATTCTA

Downstream 100 bases:

>100_bases
AATTTAAGAATAGACCGGGTTTTCGACAGCCCAAAGTTTTATAAAGTTCCCTGAGCAGCCTGAAACTAAAGCAGCCAAAT
CAATTAAATGATCGCGCAAG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKLHIKEEFGFLAGFADLLGTEVNNGILVIPDNKGKGYLRGFRLDNSINMLVSFYEFNDNVLAKRLGGQNTLNRILFSFN
TIFPDADSKNKYSGNLPSIQIFKGKLNIETFYPGRTKFNSIFIGIDSDKLAKTLGVNIHNEIFRNIITSEQPILFEELLS
PKIQQVAMEIIQTDVPDSLTDFFFKIKAEELICLTLKELFKRENPTTHALNQIDVQKIYKVRDLILNNIAVAPVIKHLAS
EVGMSESKFKRLFKQIFGDSLFSYYQKFRMKEASRLLKENKMTVSEVGFKMGFSNLSHFAKAFEQHIGIKPKSFQKLK

Sequences:

>Translated_318_residues
MKLHIKEEFGFLAGFADLLGTEVNNGILVIPDNKGKGYLRGFRLDNSINMLVSFYEFNDNVLAKRLGGQNTLNRILFSFN
TIFPDADSKNKYSGNLPSIQIFKGKLNIETFYPGRTKFNSIFIGIDSDKLAKTLGVNIHNEIFRNIITSEQPILFEELLS
PKIQQVAMEIIQTDVPDSLTDFFFKIKAEELICLTLKELFKRENPTTHALNQIDVQKIYKVRDLILNNIAVAPVIKHLAS
EVGMSESKFKRLFKQIFGDSLFSYYQKFRMKEASRLLKENKMTVSEVGFKMGFSNLSHFAKAFEQHIGIKPKSFQKLK
>Mature_318_residues
MKLHIKEEFGFLAGFADLLGTEVNNGILVIPDNKGKGYLRGFRLDNSINMLVSFYEFNDNVLAKRLGGQNTLNRILFSFN
TIFPDADSKNKYSGNLPSIQIFKGKLNIETFYPGRTKFNSIFIGIDSDKLAKTLGVNIHNEIFRNIITSEQPILFEELLS
PKIQQVAMEIIQTDVPDSLTDFFFKIKAEELICLTLKELFKRENPTTHALNQIDVQKIYKVRDLILNNIAVAPVIKHLAS
EVGMSESKFKRLFKQIFGDSLFSYYQKFRMKEASRLLKENKMTVSEVGFKMGFSNLSHFAKAFEQHIGIKPKSFQKLK

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36400; Mature: 36400

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLHIKEEFGFLAGFADLLGTEVNNGILVIPDNKGKGYLRGFRLDNSINMLVSFYEFNDN
CEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCHHHHEEEECCCCH
VLAKRLGGQNTLNRILFSFNTIFPDADSKNKYSGNLPSIQIFKGKLNIETFYPGRTKFNS
HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEECE
IFIGIDSDKLAKTLGVNIHNEIFRNIITSEQPILFEELLSPKIQQVAMEIIQTDVPDSLT
EEEEECHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHCCCCHHHH
DFFFKIKAEELICLTLKELFKRENPTTHALNQIDVQKIYKVRDLILNNIAVAPVIKHLAS
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVGMSESKFKRLFKQIFGDSLFSYYQKFRMKEASRLLKENKMTVSEVGFKMGFSNLSHFA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KAFEQHIGIKPKSFQKLK
HHHHHHCCCCCCHHCCCC
>Mature Secondary Structure
MKLHIKEEFGFLAGFADLLGTEVNNGILVIPDNKGKGYLRGFRLDNSINMLVSFYEFNDN
CEEEEHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCHHHHEEEECCCCH
VLAKRLGGQNTLNRILFSFNTIFPDADSKNKYSGNLPSIQIFKGKLNIETFYPGRTKFNS
HHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEECE
IFIGIDSDKLAKTLGVNIHNEIFRNIITSEQPILFEELLSPKIQQVAMEIIQTDVPDSLT
EEEEECHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHHHHHHCCCCHHHH
DFFFKIKAEELICLTLKELFKRENPTTHALNQIDVQKIYKVRDLILNNIAVAPVIKHLAS
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVGMSESKFKRLFKQIFGDSLFSYYQKFRMKEASRLLKENKMTVSEVGFKMGFSNLSHFA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KAFEQHIGIKPKSFQKLK
HHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]