| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301419
Identifier: 146301419
GI number: 146301419
Start: 4370908
End: 4371324
Strand: Direct
Name: 146301419
Synonym: Fjoh_3677
Alternate gene names: NA
Gene position: 4370908-4371324 (Clockwise)
Preceding gene: 146301404
Following gene: 146301426
Centisome position: 71.69
GC content: 33.57
Gene sequence:
>417_bases ATGAGTACATTAACAAAACCAAACCACATGGGGCGCAAGATCAGCCGTATCCGTGAACTGAAAGACATGAAACAGGAAGC ACTCGCACAGGCTATGGGAACAAACCAGCAGACTGTTTCGATATTAGAAAATAGTGAAGAAATAGATGATGAAAAATTGA AAGAAGTGGCAAAAGCTTTAGGAGTAAGCGTGGAAGCAATTAAAAATTTTTCTGATGAAGGAGTGATTAATTATTTCAAC ACTTTTAGTGACAATAGTATTAATCAAGGACCAATAGGTAACCAAAATATTTGTCATTTTAATCCTCTTGACAAACTAGT TGAAGTTTACGAAGAAAATAAAAAACTTTACGAAAGATTATTGAAATCCGAACAGGATAAGATTGAGTATCTGGAAAAAT TGCTAAAAGCTAAATAA
Upstream 100 bases:
>100_bases ACTTGTACCGTACGGCATCAAATTTTACCGTACCGTACATGAGATTTTTTGTATCATACATGAATTCCTCTTTTTTATTC TTAATTATTATCTTTGAGCT
Downstream 100 bases:
>100_bases GCTTTTATAAAAGATATATTAATTCGCACAAAAAGAGACTTTAGAGTCTCTTTTTTGTTTTATATTCCGTCGCATTATTT AATTCTTTCTGCGGTAAATT
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: Xin-Antitoxin System Antitoxin Component Xre Family; Transcriptional Regulator; HTH_3 Family Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; XRE Family Plasmid Maintenance System Antidote Protein; Helix-TurN-Helix Domain Protein
Number of amino acids: Translated: 138; Mature: 137
Protein sequence:
>138_residues MSTLTKPNHMGRKISRIRELKDMKQEALAQAMGTNQQTVSILENSEEIDDEKLKEVAKALGVSVEAIKNFSDEGVINYFN TFSDNSINQGPIGNQNICHFNPLDKLVEVYEENKKLYERLLKSEQDKIEYLEKLLKAK
Sequences:
>Translated_138_residues MSTLTKPNHMGRKISRIRELKDMKQEALAQAMGTNQQTVSILENSEEIDDEKLKEVAKALGVSVEAIKNFSDEGVINYFN TFSDNSINQGPIGNQNICHFNPLDKLVEVYEENKKLYERLLKSEQDKIEYLEKLLKAK >Mature_137_residues STLTKPNHMGRKISRIRELKDMKQEALAQAMGTNQQTVSILENSEEIDDEKLKEVAKALGVSVEAIKNFSDEGVINYFNT FSDNSINQGPIGNQNICHFNPLDKLVEVYEENKKLYERLLKSEQDKIEYLEKLLKAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15805; Mature: 15674
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLTKPNHMGRKISRIRELKDMKQEALAQAMGTNQQTVSILENSEEIDDEKLKEVAKAL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHH GVSVEAIKNFSDEGVINYFNTFSDNSINQGPIGNQNICHFNPLDKLVEVYEENKKLYERL CCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LKSEQDKIEYLEKLLKAK HHCCHHHHHHHHHHHHCC >Mature Secondary Structure STLTKPNHMGRKISRIRELKDMKQEALAQAMGTNQQTVSILENSEEIDDEKLKEVAKAL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHH GVSVEAIKNFSDEGVINYFNTFSDNSINQGPIGNQNICHFNPLDKLVEVYEENKKLYERL CCHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LKSEQDKIEYLEKLLKAK HHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA