| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301003
Identifier: 146301003
GI number: 146301003
Start: 3898194
End: 3899840
Strand: Reverse
Name: 146301003
Synonym: Fjoh_3259
Alternate gene names: NA
Gene position: 3899840-3898194 (Counterclockwise)
Preceding gene: 146301004
Following gene: 146301002
Centisome position: 63.96
GC content: 32.0
Gene sequence:
>1647_bases ATGAGCAGGGTTAGATTAGTTGGAGGTACTATAACAAAAACTACAGGCGGCGATCACAATATATATTCTGATGGTAATAT TGTGTATAATTCTGGTAAAGTTGTTACCGAAACAAGTGATGCAGGGATTACTTACGGAGAACCTAAAAGTTCTCCACCTG TTTCAAAATTACATTTCGTTGACGGCTGGTGGGCTTTGGATAGAGAAGGACAGAAAAAAATAAAAAGAGCAGTACCAGGT ATGACAGTTTTTTTTCATTTAAAAACTAAAGAAATCCCTAATGGTAATGCAGTATTTTTATCCTTGTTTGATGAAGACAA TCATGAAAAAGAAGAAGGTCCAAATAAAGATGGCAGGAAAGATAAAGATGATGCGATTAAATTAATTAATACAAAATCAA AAAAACAAGTTCTTGTTGCCAAAGTAACAGATAATAAAATAGTACAAGAAATAAACTTAACAGGTTTAGGATCATTAATT GCTGAAGAACAGGATAAATGTTTAGAACTTTATTTTCGCTGCAGTTATAAAAGTGAAAATGTTCAATATCCAGCAGACAG GAAAAATTATCTGGAAGTAGGTTCCATAGTCATTGACCGCTACAAAATGCCTGGATTAAACAGTGATGGCTCAAAGATTG CTGACGATATGACCTACGGAAAAGGTGTAAAGCATATTGGAGAAGTATATTCTAAGGATGTCCTTGAAAAATTTAAAAAA GAGTATGAAGAGGGAGGTTTTGATAATCAAAAGCATGCCTCTTTTTCACATCAGGACAATGTCGAAAATAAAGCCAAATA CAGCAAAGAGGAATGCTATAAGACTAGTTACAAAGTTAACATTCCAATTATAAAGAAATTAATTCCGGAAATTTCAACAG GTTTAGATGTACGATTATTTGATAAACTTTCTACAGAGAGTTTGTTTTGGGATTTTGAGCAGACAGCAACTTTATATTTT GCTTCTGGCGAGTTACAAGGAAATATTGAGCGTATGATTGCTAAATTCAAAAAAAATGAAGGTGGTGTTTATGAAGATAG AATATTAACTAAATATGTAAGTGATAATCCGAATACAAAAAAATATTGTATGAATGTTGAGGATTATATTGCAGAACAGT TAAAGCAAAATGTGGCAGATTTGAAAAAAGCAGAAGATGCTAAACCTTATTTCGGAAGTCCTGAAACCATAACGAGAAAT CGAAAAACGAAGAATAAAGAGTATTTTACTAAACCAATGTATTCTTATGACAATTTAAGTAATGTAACAGGTGGTTTAAC TATTGCTTTAAATGATATTTGGGCTGCAGAAGTACTTTTACAAGAATTAAAATTTGATAAAGACAACTATACAGGAAAAT ATCAAGTAACTCTATGGGATCATTTTGGACTTGATTTACCCGATATGGAAAAAGTTTTTAATATTATACCAAGTGTTGGA GAAACTTTTGTAACATGGTTTGTTTTACAGCATTTAAGAGGATACAAGCCTTTTATCACTAAAATGACTTTCGAAAGAAC ATTTTCAGGTAATATTAAAGAAGGTAAAAAAGAAAGAACAGACAAAAGAAAATCTGAAGAACGTGCAAAAGCACAAAAAT GGGCAGAGGAAGAACGAGCAAAAATGATGAGGGGGCCAAAATTTTAA
Upstream 100 bases:
>100_bases AGTTAAAGGAATTGATACAAGCAGTGAAGGAGGGATAAATAAACACTCTAAAAAAGAAATGCAAATTAACAGCGCCGAAA AATCTAAATCTTACTAATGT
Downstream 100 bases:
>100_bases AAAAGAATGAAAAAACTATTTTTTTTAATAATCATAACAGCATTTTTATCTTCTTGCCATGAGAAGAAAGTTACGTTTGT AAATTTAGAAAAACACAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MSRVRLVGGTITKTTGGDHNIYSDGNIVYNSGKVVTETSDAGITYGEPKSSPPVSKLHFVDGWWALDREGQKKIKRAVPG MTVFFHLKTKEIPNGNAVFLSLFDEDNHEKEEGPNKDGRKDKDDAIKLINTKSKKQVLVAKVTDNKIVQEINLTGLGSLI AEEQDKCLELYFRCSYKSENVQYPADRKNYLEVGSIVIDRYKMPGLNSDGSKIADDMTYGKGVKHIGEVYSKDVLEKFKK EYEEGGFDNQKHASFSHQDNVENKAKYSKEECYKTSYKVNIPIIKKLIPEISTGLDVRLFDKLSTESLFWDFEQTATLYF ASGELQGNIERMIAKFKKNEGGVYEDRILTKYVSDNPNTKKYCMNVEDYIAEQLKQNVADLKKAEDAKPYFGSPETITRN RKTKNKEYFTKPMYSYDNLSNVTGGLTIALNDIWAAEVLLQELKFDKDNYTGKYQVTLWDHFGLDLPDMEKVFNIIPSVG ETFVTWFVLQHLRGYKPFITKMTFERTFSGNIKEGKKERTDKRKSEERAKAQKWAEEERAKMMRGPKF
Sequences:
>Translated_548_residues MSRVRLVGGTITKTTGGDHNIYSDGNIVYNSGKVVTETSDAGITYGEPKSSPPVSKLHFVDGWWALDREGQKKIKRAVPG MTVFFHLKTKEIPNGNAVFLSLFDEDNHEKEEGPNKDGRKDKDDAIKLINTKSKKQVLVAKVTDNKIVQEINLTGLGSLI AEEQDKCLELYFRCSYKSENVQYPADRKNYLEVGSIVIDRYKMPGLNSDGSKIADDMTYGKGVKHIGEVYSKDVLEKFKK EYEEGGFDNQKHASFSHQDNVENKAKYSKEECYKTSYKVNIPIIKKLIPEISTGLDVRLFDKLSTESLFWDFEQTATLYF ASGELQGNIERMIAKFKKNEGGVYEDRILTKYVSDNPNTKKYCMNVEDYIAEQLKQNVADLKKAEDAKPYFGSPETITRN RKTKNKEYFTKPMYSYDNLSNVTGGLTIALNDIWAAEVLLQELKFDKDNYTGKYQVTLWDHFGLDLPDMEKVFNIIPSVG ETFVTWFVLQHLRGYKPFITKMTFERTFSGNIKEGKKERTDKRKSEERAKAQKWAEEERAKMMRGPKF >Mature_547_residues SRVRLVGGTITKTTGGDHNIYSDGNIVYNSGKVVTETSDAGITYGEPKSSPPVSKLHFVDGWWALDREGQKKIKRAVPGM TVFFHLKTKEIPNGNAVFLSLFDEDNHEKEEGPNKDGRKDKDDAIKLINTKSKKQVLVAKVTDNKIVQEINLTGLGSLIA EEQDKCLELYFRCSYKSENVQYPADRKNYLEVGSIVIDRYKMPGLNSDGSKIADDMTYGKGVKHIGEVYSKDVLEKFKKE YEEGGFDNQKHASFSHQDNVENKAKYSKEECYKTSYKVNIPIIKKLIPEISTGLDVRLFDKLSTESLFWDFEQTATLYFA SGELQGNIERMIAKFKKNEGGVYEDRILTKYVSDNPNTKKYCMNVEDYIAEQLKQNVADLKKAEDAKPYFGSPETITRNR KTKNKEYFTKPMYSYDNLSNVTGGLTIALNDIWAAEVLLQELKFDKDNYTGKYQVTLWDHFGLDLPDMEKVFNIIPSVGE TFVTWFVLQHLRGYKPFITKMTFERTFSGNIKEGKKERTDKRKSEERAKAQKWAEEERAKMMRGPKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62783; Mature: 62652
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVRLVGGTITKTTGGDHNIYSDGNIVYNSGKVVTETSDAGITYGEPKSSPPVSKLHFV CCCEEEECCEEEECCCCCCCEECCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEE DGWWALDREGQKKIKRAVPGMTVFFHLKTKEIPNGNAVFLSLFDEDNHEKEEGPNKDGRK CCEEEECCHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCHHCCCCCCCCC DKDDAIKLINTKSKKQVLVAKVTDNKIVQEINLTGLGSLIAEEQDKCLELYFRCSYKSEN CHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCC VQYPADRKNYLEVGSIVIDRYKMPGLNSDGSKIADDMTYGKGVKHIGEVYSKDVLEKFKK CCCCCCCCHHHHHHHHHEEHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EYEEGGFDNQKHASFSHQDNVENKAKYSKEECYKTSYKVNIPIIKKLIPEISTGLDVRLF HHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHCCEEECCHHHHHHHHHHHCCCCEEEH DKLSTESLFWDFEQTATLYFASGELQGNIERMIAKFKKNEGGVYEDRILTKYVSDNPNTK HHCCCHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCH KYCMNVEDYIAEQLKQNVADLKKAEDAKPYFGSPETITRNRKTKNKEYFTKPMYSYDNLS HEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHCCCCCCCCCCC NVTGGLTIALNDIWAAEVLLQELKFDKDNYTGKYQVTLWDHFGLDLPDMEKVFNIIPSVG CCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH ETFVTWFVLQHLRGYKPFITKMTFERTFSGNIKEGKKERTDKRKSEERAKAQKWAEEERA HHHHHHHHHHHHCCCCHHHHHEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KMMRGPKF HHHCCCCC >Mature Secondary Structure SRVRLVGGTITKTTGGDHNIYSDGNIVYNSGKVVTETSDAGITYGEPKSSPPVSKLHFV CCEEEECCEEEECCCCCCCEECCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCEEEEE DGWWALDREGQKKIKRAVPGMTVFFHLKTKEIPNGNAVFLSLFDEDNHEKEEGPNKDGRK CCEEEECCHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCHHCCCCCCCCC DKDDAIKLINTKSKKQVLVAKVTDNKIVQEINLTGLGSLIAEEQDKCLELYFRCSYKSEN CHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCC VQYPADRKNYLEVGSIVIDRYKMPGLNSDGSKIADDMTYGKGVKHIGEVYSKDVLEKFKK CCCCCCCCHHHHHHHHHEEHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EYEEGGFDNQKHASFSHQDNVENKAKYSKEECYKTSYKVNIPIIKKLIPEISTGLDVRLF HHHHCCCCCCCCCCCCCCCCCHHHHHHCHHHHHHCCEEECCHHHHHHHHHHHCCCCEEEH DKLSTESLFWDFEQTATLYFASGELQGNIERMIAKFKKNEGGVYEDRILTKYVSDNPNTK HHCCCHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCH KYCMNVEDYIAEQLKQNVADLKKAEDAKPYFGSPETITRNRKTKNKEYFTKPMYSYDNLS HEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCHHHCCCCCCCCCCC NVTGGLTIALNDIWAAEVLLQELKFDKDNYTGKYQVTLWDHFGLDLPDMEKVFNIIPSVG CCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH ETFVTWFVLQHLRGYKPFITKMTFERTFSGNIKEGKKERTDKRKSEERAKAQKWAEEERA HHHHHHHHHHHHCCCCHHHHHEEHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH KMMRGPKF HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA