| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146300977
Identifier: 146300977
GI number: 146300977
Start: 3852108
End: 3852941
Strand: Reverse
Name: 146300977
Synonym: Fjoh_3232
Alternate gene names: NA
Gene position: 3852941-3852108 (Counterclockwise)
Preceding gene: 146300978
Following gene: 146300976
Centisome position: 63.2
GC content: 35.37
Gene sequence:
>834_bases ATGATTCCTCCACTTACTATAATCGCCGCCACAAATTTTTCTTCAATTGCCAACAACGCTGTTACTTATGCCGCTGGACT TGCTAAAGCAACAGGTGCTAAACTTATTTTGTTTAATTCATTTTCTTTGAGTGTTCACAGCGCTAATTCTTTAATTACTG CCGAATCAATGCAGAAACAAATGGATAAAGCAGCACTGAGACTTCAGACTTTTGGAGCAGAAATCGCAGGTTTGTTTAAA ATTTCGGTAGAAAGCATCTGCAGTTATTCTTTTCTGGAAGACGAACTTCCTTCGATCATTACACAAACGAATGCTAATCT AGTGGTTATGGGAATGGCAGAACGTTCTCTGGAACAGGATTTAATGGGAAATTCGACTACAGCAGTTATAAAAAACCTGA ATATTCCGGTTTTGGCTGTGCCGCAGAATGCACGTTTTCTAAATGCTAAAAAAATCCTGTATGCCTGTGATACGCTGAGT TTATCTTCTATAAAAAGATTTACCTGGATTAGACGCGTGATTGGAAATTTAGGTTCTGAAATTGAATTTTTCAGCGTTGA TGAAAAACTGGACGAAATTAAAGAGGAGCAGGGAAAAGTTTTACTGAATTCTTCGATTGAAAAAGAGTTTGAAGACGTAA AATATATTTACAAAAACGTACGTTCAAATGCGGTAATCAATGAGATAAGAAAAGAAATCAAAAATTTTGAAGCTGATATT TTAGTAATGGTTCCTCAAAAATATGGTTTTTGGGATTCATTAGTTCATAAAAGTAAAACCAGAATCATGGCAGCAGGTTT AGATATTCCGTTACTATCTATTCCGAAGAATTAA
Upstream 100 bases:
>100_bases TTACGGTTGAGACCTAAAAAATGATTATTCAGTAACTTTAAAATAAACTGAAAAGATTAATTGGGCATTTTTACAATTAA AATGTTTAATAGATATATTT
Downstream 100 bases:
>100_bases GGGAAAAAATAAAAACACCTTTAAGATTGTGCGGTAAGATTTTTTGGAAATTTATGCTTTTTTATATTAATTGTTTGTTA ATTATTGAAAATCCGACCCT
Product: UspA domain-containing protein
Products: NA
Alternate protein names: UspA Domain-Containing Protein; Uspa DomaiN-Containing Protein; Universal Stress Protein UspA
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MIPPLTIIAATNFSSIANNAVTYAAGLAKATGAKLILFNSFSLSVHSANSLITAESMQKQMDKAALRLQTFGAEIAGLFK ISVESICSYSFLEDELPSIITQTNANLVVMGMAERSLEQDLMGNSTTAVIKNLNIPVLAVPQNARFLNAKKILYACDTLS LSSIKRFTWIRRVIGNLGSEIEFFSVDEKLDEIKEEQGKVLLNSSIEKEFEDVKYIYKNVRSNAVINEIRKEIKNFEADI LVMVPQKYGFWDSLVHKSKTRIMAAGLDIPLLSIPKN
Sequences:
>Translated_277_residues MIPPLTIIAATNFSSIANNAVTYAAGLAKATGAKLILFNSFSLSVHSANSLITAESMQKQMDKAALRLQTFGAEIAGLFK ISVESICSYSFLEDELPSIITQTNANLVVMGMAERSLEQDLMGNSTTAVIKNLNIPVLAVPQNARFLNAKKILYACDTLS LSSIKRFTWIRRVIGNLGSEIEFFSVDEKLDEIKEEQGKVLLNSSIEKEFEDVKYIYKNVRSNAVINEIRKEIKNFEADI LVMVPQKYGFWDSLVHKSKTRIMAAGLDIPLLSIPKN >Mature_277_residues MIPPLTIIAATNFSSIANNAVTYAAGLAKATGAKLILFNSFSLSVHSANSLITAESMQKQMDKAALRLQTFGAEIAGLFK ISVESICSYSFLEDELPSIITQTNANLVVMGMAERSLEQDLMGNSTTAVIKNLNIPVLAVPQNARFLNAKKILYACDTLS LSSIKRFTWIRRVIGNLGSEIEFFSVDEKLDEIKEEQGKVLLNSSIEKEFEDVKYIYKNVRSNAVINEIRKEIKNFEADI LVMVPQKYGFWDSLVHKSKTRIMAAGLDIPLLSIPKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30674; Mature: 30674
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPPLTIIAATNFSSIANNAVTYAAGLAKATGAKLILFNSFSLSVHSANSLITAESMQKQ CCCCEEEEEECCHHHHHCCHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEEEHHHHHHH MDKAALRLQTFGAEIAGLFKISVESICSYSFLEDELPSIITQTNANLVVMGMAERSLEQD HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHH LMGNSTTAVIKNLNIPVLAVPQNARFLNAKKILYACDTLSLSSIKRFTWIRRVIGNLGSE HCCCCHHHHEEECCCCEEEECCCCCEECHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCC IEFFSVDEKLDEIKEEQGKVLLNSSIEKEFEDVKYIYKNVRSNAVINEIRKEIKNFEADI EEEEEHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCE LVMVPQKYGFWDSLVHKSKTRIMAAGLDIPLLSIPKN EEEECCCCCHHHHHHHHHHHEEEEECCCCCEEECCCC >Mature Secondary Structure MIPPLTIIAATNFSSIANNAVTYAAGLAKATGAKLILFNSFSLSVHSANSLITAESMQKQ CCCCEEEEEECCHHHHHCCHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCEEEHHHHHHH MDKAALRLQTFGAEIAGLFKISVESICSYSFLEDELPSIITQTNANLVVMGMAERSLEQD HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHH LMGNSTTAVIKNLNIPVLAVPQNARFLNAKKILYACDTLSLSSIKRFTWIRRVIGNLGSE HCCCCHHHHEEECCCCEEEECCCCCEECHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCC IEFFSVDEKLDEIKEEQGKVLLNSSIEKEFEDVKYIYKNVRSNAVINEIRKEIKNFEADI EEEEEHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCE LVMVPQKYGFWDSLVHKSKTRIMAAGLDIPLLSIPKN EEEECCCCCHHHHHHHHHHHEEEEECCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA