| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
Click here to switch to the map view.
The map label for this gene is 146300904
Identifier: 146300904
GI number: 146300904
Start: 3754071
End: 3756773
Strand: Direct
Name: 146300904
Synonym: Fjoh_3159
Alternate gene names: NA
Gene position: 3754071-3756773 (Clockwise)
Preceding gene: 146300903
Following gene: 146300905
Centisome position: 61.57
GC content: 35.63
Gene sequence:
>2703_bases ATGCCGCTACTAGACCAACATATCACCATTCCTAAAAAATCAGCATCAGAGGACGATTTGGATTTCTTTTATCTAAGAAA AAAAGGAATCGAATATATCGAGTCTTTTGGCAGTAAATTCTGGACTGATTTTAACGAGCACGATCCAGGGATTACGATGC TGGAAATGCTTTGCTACGCCATTTCAGATCTTGGCATGAGACTCAATCTTCCGATAGAAAATATATTAGCATCTGATGAC AGCGATAAAGGCATTCCAAAACAGTTTTTTAAAGCCTCAGAAGTATTGTCATCAAGTCCTGTTACACAAAATGATTACCG AAAACTATTTATAGACATAAAAGGCGTTCGAAACTGCTGGCTTGCCAAACATGAAAAAACAGTGTATGTAGACTGCAAAA AAAATCAGCTTTCTTATGACATTAAGGATTATCAAAATCTGCCGGAAAACTTAAGAAAATCTTTTGACATCAACGGCTTA TACGATCTTTATGTAGATTTTGAAAGCTCAAAACCTTCAGAAATAGAAGCCGTTAAAGAAAAAATAAGAAAGCAGTATCA TGCAAACAGAAACCTTTGTGAAGATCTTGTCGATATTAAAAAAGTGGTAGACTACCCTATTAAAATATGTGCCGATATCG AAGTTGATACAGAAGCCGATGAAGAACTGGTTCATGCCAATGTGATTAATGCTCTGGAAAGCTACTTATCGACAACCGTC AATTTTTATTCTCTAAAACAAATGATTGACAAAGGATATTCAACTTTGGAAATTTTCGACGGTCCAAGTTTAGAAAACGG TTTTATTGATACAAAAGAACTCCTTACGGCCGATTTGAGAAACGAAGTGCGTCTTTCAGATATTATGAGAATAATAATGT CTGTACCTGATGTAATTTTAATTAAAGATATTTCTTTGGGAAATTGCGGCGGTGATGATTTGGAAAACAAATGGCTTATC TGTCTTGCCCCTTACCAAAAACCCGTTATTTGTGCTAAAAGTGTATTCAATTACAACAAAGGATTACTGCCTTTGAATAT CAATCAGGCTCAGGTAAAAATTTATTTAGATGCTATAAAAGCCGAAAAAGACAAAGCTACAACCAACGCCAGTCAGGATA AAGAATTAGATGTGCCAAATGGCGAATATCTTAACACCGATTTTTATACCACTATACAAAATGATTTTCCTGAAACTTAT GGAATTGGCGAAGTTGGGCTTCCTTCCAGAGCATCTGTTGAACGCAAATCGAAAGCAAAACAATTAAAAGGATATCTTTT ATTTTTTGATCAGATATTAGGAAGTTATTTTAAACAACTGGGGCAGATAAGCGAATTACTTTCAGTAAGCGGCAATTTAA CCCGAACCCTTTTTACTCAGGTTGTCAAAGACATTGAAGGAGCAGATGAAATTGTAAACGGATATGAAAATTACACCGAT GACAGCATTACAGAACTGCTTTTTGACCAGCAGGACAATAATATAGAACGAAGAAATAAAATTTTAGACCATCTTTTGTC CCGTTTTGCCGAGAATTTCTCGGAGTACGTATTTGTCAATAAAACCATTTACGGCAATACTACAGATCAGGTAGTACTGC GTGACAAAGAAAACTTTCTAAAAGATTATAAAGTAGTAAGTAAAGAGCGCGGCAATGCCTTTGATTATTACAAACAGCCC ACTGCTAATTTATGGAATACCAATAATGTTTCGGGAGCAGAAAAAAGGATTTCGAGATTGATTGGTATTCGAAATTACAG CCGCAGGAATCTTTCTAATTCGTTTGTCGAAATGTACAATTTTATTGATTCAGATAATCAATCAGTTTATAGATGGCGCA TTCTGGATACTCATAATGAAATTGTGCTTTCTTCAACAGCGGAATACTTTGATACTTCTGCTGCAAATAAAGAGCTTTAT TTTGCTGTATTACAGATTATTCAGACTCGCGAATACAAAATAAAAGAAGCTTTTAAAAACGGCACAGTACAAGATTTATC TATTATCGATAATATTTTGATTCAGCAGTCAGATGCCGGAAAATATTCTTATGATATTATAAATCCGGCAATTAATGACA AGAAAAATCCTGACCGCATTATTGCCCGCAGATATGAATACTATACTAATCTGGCGGATTTAGAAAAATCAATTCTGGAC TTAATTCAGTTCATGAAAGAAGATTTTACCGAAGAAGGAATGTTTTTGGTAGAACACATGATGCTTCGCCCGGATGTAAA CCAGACAACCGTAAATCCAGATACCTTCATGCCAGTCTGCGCCGATGAGTGCGGTGATTGCGAACCAATAGATCCCTACT CCTATCGCGTGAGCGTAGTACTTCCGGGATATACATTGCGATTTGCCAACACCGATTTTAGAAATTATATAGAAAAAATA ATTAAAGAAGAATTACCAGCTCACGTTCTGGCAAAAATATGCTGGATTGGCTACAGGGAAAAAGATGTAAAAGACCCCGC AGAAAACCAGCTTATTCAATTTGAAAAAACCTATAAAGACTATTTATCCGCCAAAACAAATTTGAATCAGGAACAGCCGG AACCGCAATTAATCAGCTTTATAAAATCACTAACCAGTCTGGATAATGTTTACCCAACAGGACGACTATTTGACTGCAGT GATGAAAACGAGCGATTGTCAGATAAAATTATACTAGGAAAAACGAATTTAGGATCACTATAA
Upstream 100 bases:
>100_bases CACCATCAAGTCCAAAAAACATTTTAGTTTCTGTTAAAAACCATATTATCAGTACCAAAATAGACACTTGCAAAAAAATA ACTCAAGAAGAACCTGAAAA
Downstream 100 bases:
>100_bases AAACTATTGCCATGTCAGCAAAACTTTCAACAATAACAACACAATACCGAAGATTCACAAAGAATCAGGTACTTACAGAA GGAAACCTTAATGAGGTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 900; Mature: 899
Protein sequence:
>900_residues MPLLDQHITIPKKSASEDDLDFFYLRKKGIEYIESFGSKFWTDFNEHDPGITMLEMLCYAISDLGMRLNLPIENILASDD SDKGIPKQFFKASEVLSSSPVTQNDYRKLFIDIKGVRNCWLAKHEKTVYVDCKKNQLSYDIKDYQNLPENLRKSFDINGL YDLYVDFESSKPSEIEAVKEKIRKQYHANRNLCEDLVDIKKVVDYPIKICADIEVDTEADEELVHANVINALESYLSTTV NFYSLKQMIDKGYSTLEIFDGPSLENGFIDTKELLTADLRNEVRLSDIMRIIMSVPDVILIKDISLGNCGGDDLENKWLI CLAPYQKPVICAKSVFNYNKGLLPLNINQAQVKIYLDAIKAEKDKATTNASQDKELDVPNGEYLNTDFYTTIQNDFPETY GIGEVGLPSRASVERKSKAKQLKGYLLFFDQILGSYFKQLGQISELLSVSGNLTRTLFTQVVKDIEGADEIVNGYENYTD DSITELLFDQQDNNIERRNKILDHLLSRFAENFSEYVFVNKTIYGNTTDQVVLRDKENFLKDYKVVSKERGNAFDYYKQP TANLWNTNNVSGAEKRISRLIGIRNYSRRNLSNSFVEMYNFIDSDNQSVYRWRILDTHNEIVLSSTAEYFDTSAANKELY FAVLQIIQTREYKIKEAFKNGTVQDLSIIDNILIQQSDAGKYSYDIINPAINDKKNPDRIIARRYEYYTNLADLEKSILD LIQFMKEDFTEEGMFLVEHMMLRPDVNQTTVNPDTFMPVCADECGDCEPIDPYSYRVSVVLPGYTLRFANTDFRNYIEKI IKEELPAHVLAKICWIGYREKDVKDPAENQLIQFEKTYKDYLSAKTNLNQEQPEPQLISFIKSLTSLDNVYPTGRLFDCS DENERLSDKIILGKTNLGSL
Sequences:
>Translated_900_residues MPLLDQHITIPKKSASEDDLDFFYLRKKGIEYIESFGSKFWTDFNEHDPGITMLEMLCYAISDLGMRLNLPIENILASDD SDKGIPKQFFKASEVLSSSPVTQNDYRKLFIDIKGVRNCWLAKHEKTVYVDCKKNQLSYDIKDYQNLPENLRKSFDINGL YDLYVDFESSKPSEIEAVKEKIRKQYHANRNLCEDLVDIKKVVDYPIKICADIEVDTEADEELVHANVINALESYLSTTV NFYSLKQMIDKGYSTLEIFDGPSLENGFIDTKELLTADLRNEVRLSDIMRIIMSVPDVILIKDISLGNCGGDDLENKWLI CLAPYQKPVICAKSVFNYNKGLLPLNINQAQVKIYLDAIKAEKDKATTNASQDKELDVPNGEYLNTDFYTTIQNDFPETY GIGEVGLPSRASVERKSKAKQLKGYLLFFDQILGSYFKQLGQISELLSVSGNLTRTLFTQVVKDIEGADEIVNGYENYTD DSITELLFDQQDNNIERRNKILDHLLSRFAENFSEYVFVNKTIYGNTTDQVVLRDKENFLKDYKVVSKERGNAFDYYKQP TANLWNTNNVSGAEKRISRLIGIRNYSRRNLSNSFVEMYNFIDSDNQSVYRWRILDTHNEIVLSSTAEYFDTSAANKELY FAVLQIIQTREYKIKEAFKNGTVQDLSIIDNILIQQSDAGKYSYDIINPAINDKKNPDRIIARRYEYYTNLADLEKSILD LIQFMKEDFTEEGMFLVEHMMLRPDVNQTTVNPDTFMPVCADECGDCEPIDPYSYRVSVVLPGYTLRFANTDFRNYIEKI IKEELPAHVLAKICWIGYREKDVKDPAENQLIQFEKTYKDYLSAKTNLNQEQPEPQLISFIKSLTSLDNVYPTGRLFDCS DENERLSDKIILGKTNLGSL >Mature_899_residues PLLDQHITIPKKSASEDDLDFFYLRKKGIEYIESFGSKFWTDFNEHDPGITMLEMLCYAISDLGMRLNLPIENILASDDS DKGIPKQFFKASEVLSSSPVTQNDYRKLFIDIKGVRNCWLAKHEKTVYVDCKKNQLSYDIKDYQNLPENLRKSFDINGLY DLYVDFESSKPSEIEAVKEKIRKQYHANRNLCEDLVDIKKVVDYPIKICADIEVDTEADEELVHANVINALESYLSTTVN FYSLKQMIDKGYSTLEIFDGPSLENGFIDTKELLTADLRNEVRLSDIMRIIMSVPDVILIKDISLGNCGGDDLENKWLIC LAPYQKPVICAKSVFNYNKGLLPLNINQAQVKIYLDAIKAEKDKATTNASQDKELDVPNGEYLNTDFYTTIQNDFPETYG IGEVGLPSRASVERKSKAKQLKGYLLFFDQILGSYFKQLGQISELLSVSGNLTRTLFTQVVKDIEGADEIVNGYENYTDD SITELLFDQQDNNIERRNKILDHLLSRFAENFSEYVFVNKTIYGNTTDQVVLRDKENFLKDYKVVSKERGNAFDYYKQPT ANLWNTNNVSGAEKRISRLIGIRNYSRRNLSNSFVEMYNFIDSDNQSVYRWRILDTHNEIVLSSTAEYFDTSAANKELYF AVLQIIQTREYKIKEAFKNGTVQDLSIIDNILIQQSDAGKYSYDIINPAINDKKNPDRIIARRYEYYTNLADLEKSILDL IQFMKEDFTEEGMFLVEHMMLRPDVNQTTVNPDTFMPVCADECGDCEPIDPYSYRVSVVLPGYTLRFANTDFRNYIEKII KEELPAHVLAKICWIGYREKDVKDPAENQLIQFEKTYKDYLSAKTNLNQEQPEPQLISFIKSLTSLDNVYPTGRLFDCSD ENERLSDKIILGKTNLGSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 103656; Mature: 103525
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLDQHITIPKKSASEDDLDFFYLRKKGIEYIESFGSKFWTDFNEHDPGITMLEMLCYA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH ISDLGMRLNLPIENILASDDSDKGIPKQFFKASEVLSSSPVTQNDYRKLFIDIKGVRNCW HHHCCCEECCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH LAKHEKTVYVDCKKNQLSYDIKDYQNLPENLRKSFDINGLYDLYVDFESSKPSEIEAVKE HCCCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHH KIRKQYHANRNLCEDLVDIKKVVDYPIKICADIEVDTEADEELVHANVINALESYLSTTV HHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH NFYSLKQMIDKGYSTLEIFDGPSLENGFIDTKELLTADLRNEVRLSDIMRIIMSVPDVIL HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE IKDISLGNCGGDDLENKWLICLAPYQKPVICAKSVFNYNKGLLPLNINQAQVKIYLDAIK EEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEEEEEHHH AEKDKATTNASQDKELDVPNGEYLNTDFYTTIQNDFPETYGIGEVGLPSRASVERKSKAK CCHHHCCCCCCCCCCCCCCCCCEECCCCEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH QLKGYLLFFDQILGSYFKQLGQISELLSVSGNLTRTLFTQVVKDIEGADEIVNGYENYTD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC DSITELLFDQQDNNIERRNKILDHLLSRFAENFSEYVFVNKTIYGNTTDQVVLRDKENFL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHCEEEEEEEEECCCCCEEEEECHHHHH KDYKVVSKERGNAFDYYKQPTANLWNTNNVSGAEKRISRLIGIRNYSRRNLSNSFVEMYN HHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH FIDSDNQSVYRWRILDTHNEIVLSSTAEYFDTSAANKELYFAVLQIIQTREYKIKEAFKN HHCCCCCCEEEEEEECCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC GTVQDLSIIDNILIQQSDAGKYSYDIINPAINDKKNPDRIIARRYEYYTNLADLEKSILD CCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LIQFMKEDFTEEGMFLVEHMMLRPDVNQTTVNPDTFMPVCADECGDCEPIDPYSYRVSVV HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEE LPGYTLRFANTDFRNYIEKIIKEELPAHVLAKICWIGYREKDVKDPAENQLIQFEKTYKD ECCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH YLSAKTNLNQEQPEPQLISFIKSLTSLDNVYPTGRLFDCSDENERLSDKIILGKTNLGSL HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEECCCCCCC >Mature Secondary Structure PLLDQHITIPKKSASEDDLDFFYLRKKGIEYIESFGSKFWTDFNEHDPGITMLEMLCYA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH ISDLGMRLNLPIENILASDDSDKGIPKQFFKASEVLSSSPVTQNDYRKLFIDIKGVRNCW HHHCCCEECCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH LAKHEKTVYVDCKKNQLSYDIKDYQNLPENLRKSFDINGLYDLYVDFESSKPSEIEAVKE HCCCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHH KIRKQYHANRNLCEDLVDIKKVVDYPIKICADIEVDTEADEELVHANVINALESYLSTTV HHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH NFYSLKQMIDKGYSTLEIFDGPSLENGFIDTKELLTADLRNEVRLSDIMRIIMSVPDVIL HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE IKDISLGNCGGDDLENKWLICLAPYQKPVICAKSVFNYNKGLLPLNINQAQVKIYLDAIK EEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEEEEEHHH AEKDKATTNASQDKELDVPNGEYLNTDFYTTIQNDFPETYGIGEVGLPSRASVERKSKAK CCHHHCCCCCCCCCCCCCCCCCEECCCCEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH QLKGYLLFFDQILGSYFKQLGQISELLSVSGNLTRTLFTQVVKDIEGADEIVNGYENYTD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCC DSITELLFDQQDNNIERRNKILDHLLSRFAENFSEYVFVNKTIYGNTTDQVVLRDKENFL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHCEEEEEEEEECCCCCEEEEECHHHHH KDYKVVSKERGNAFDYYKQPTANLWNTNNVSGAEKRISRLIGIRNYSRRNLSNSFVEMYN HHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHH FIDSDNQSVYRWRILDTHNEIVLSSTAEYFDTSAANKELYFAVLQIIQTREYKIKEAFKN HHCCCCCCEEEEEEECCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC GTVQDLSIIDNILIQQSDAGKYSYDIINPAINDKKNPDRIIARRYEYYTNLADLEKSILD CCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LIQFMKEDFTEEGMFLVEHMMLRPDVNQTTVNPDTFMPVCADECGDCEPIDPYSYRVSVV HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEE LPGYTLRFANTDFRNYIEKIIKEELPAHVLAKICWIGYREKDVKDPAENQLIQFEKTYKD ECCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH YLSAKTNLNQEQPEPQLISFIKSLTSLDNVYPTGRLFDCSDENERLSDKIILGKTNLGSL HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA