Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
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Accession | NC_009441 |
Length | 6,096,872 |
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The map label for this gene is 146300870
Identifier: 146300870
GI number: 146300870
Start: 3708706
End: 3711012
Strand: Reverse
Name: 146300870
Synonym: Fjoh_3125
Alternate gene names: NA
Gene position: 3711012-3708706 (Counterclockwise)
Preceding gene: 146300871
Following gene: 146300869
Centisome position: 60.87
GC content: 36.41
Gene sequence:
>2307_bases ATGGAATTAAAAAAAATCTATAAAATAGGACATATTGCAATAAGTCTAACACTTATTTTTTTAGTGTCATGCAGCGCCCA GAAAAAACTTTCTCTGCAAAAGAAACAAATTTCAGATATGGTTTATCCGCTGCTGGACACCGAAAATTCAAGATGGTTTT ACTTTTCATCAGCAAGCCGTCCTTTTGGTATGGTAAATTTAAATCCCGATACAGAAATTAAAGGAGATTGGGGAGGCGGT TATAAATATACGACAGATACTGTCAAAGGTTTCAGCCACGTACACGAATGGCAGATGTCGGGTGTATCAGTAATGCCCGT AACAATTTCGAAAGAAAATAAAGCGGCAATTTTTAAAGATTTTTATTCGAAATTCAGTCATAAAGCTGAAGTAATAACTC CAGGATATCATTCACTAAAACTAGATCGATATCAGATTACAGCAGAATTAACGAGTACCAAAAGAGTTGGTTTTCATAAA TATACATTTCCAGTTAAAGGACAAAAAGCCGTTCTCTTTAATCTGAATACCATTTTAGGGCCTTGCGAAAACACCAACGG TAAATTAGAAAAAAACAACGATTATGAACTTTCAGGATCTTTAGTTTTAAGTACTAATTTCAGACGTCCAAAACCATTAA CCGTATTTTTTAAAGTTAAAACAAGTGAGCCGATTTCTTCTGTTGAAAGAGACGATGCTACAGGAAATTATTTGATTCAT TTTGATAAAACCAAAGAACAAGTATTAATGAAAGTCGGTATTTCTTATACCTCAATTGAGAATGCCAATAACAATATTGA AACAGAATTACCGTATTGGGACTTCAATAAAACAACTGCCGATTCTCAAAAAGAATGGAGCAATTTGTTAGGAAGAATAA AAATAGAAGGCGGAACAGAAACTGACCAAAGAAGATTTTACACTGATTTATGGCATGCTCTGCAGGGAAGAAAAATGATT AGTGATGCAAATGGAGCCTATCCTGATAATACAGGGGACATATTCAGGATAGGACATTTGCCTTTAAAAGCAGACGGAAA ACCAAAATTCAACCACTATAATTCAGATGCTTTTTGGGGAGCACAATGGACCATCAATAACCTTTGGGGATTGGTATATC CTGAAATTATGGAAGAATTTGTGTATTCGCTGATGCAGTATTACAAAGACGGAGGAATAATCCCGCGCGGTCCTTCTGGA GGAAATGATACGTATGTAATGACAGGAGCTTCGACAACCCCCTTTATTGTCAGCGCGATTCAAAAAGGAATTGTAAAAGA AAATCTGGAAAAAATTTACATCGCACTTAAAAAAAATCATATGCCCGGCGGTATTATGGAAAAAGCCGGATATGAACACA ATACCAATATTGGCGGAGGCTTAAAGTATTATTTAGAAAAAGGATATGTGCCGTATCCGCTTCCAGACGGCAATTTCGGA AGCCACGAAGACGGTGCAAGCCAGACTTTGGAATATGCGTATCAGGATTGGACTTTGGCACAGCTCGCTAAAAAACTCAA TCATGAAGAAGATTATCTATATTTCATGAAAAGAGCCAAAAACTATAAAAATGTTTTTGATGCTGAAATAGGCTGGATGC GTCCGAAAAACGCAGACGGGAAATGGCGTGAAAATTACGATCCGTATCAATACGAAAACGGATTTATAGAATCAAACGGT GCGCAGTCAACGTGGTTTGTACCGCATGATATTTTAGGTCTGGCTGATTTAATGGGAGGAAAAGAAAAAGCAGCGGCAAA ATTAAATGCGCAATTTGAAACCGCTAAAAAACAAAATTATACTTCTGGCACATCGCACGATGCAGAATTGCACCCGGAGT TTAGCAGAATTCCTGTAAATTTCGGAAATCAGCCGTCTATGCAGACTTCTAATATCTTCACCATTTTAGGAAGACCAGAT TTAACACAGTATTGGACAAGAAATGTGGTAAAAGAAACCTTCAGCGGTTTATCGCCAGCAACAGGTTATAACGGAGATGA AGATCAGGGATTAATGGGAAGCCTGAATGTCTTGTTGAAATTAGGTTTGTTTCAAATGAACGGAGGAACAGACCAAGACG CTGTTTATCAAATAGGAAGTCCGATATTTAATAAGATTACGATAACATTAAATCCAAAATATTATTCAGGAAAAACATTT GTAATTAATGCTCAGAAAAATAGTCCTGAAAATGTGTATATCAAAGACATAAAATACAACAACAAACACGTAAAAGATTT TACACTAACCCATAAAGAGATTACAAACGGAGGAGAACTGATCCTGCAGATGTCAGCAAGAAAGTAA
Upstream 100 bases:
>100_bases TTCTCACAGGAAATCCTTTGCCTTAGATTTTCGATTTAAAAAAAATCAAAACAAACAATCCTGCTCAAAATCACTATTGC CCCATCAATACAAGAATTAA
Downstream 100 bases:
>100_bases AATAAAGAAGCAATGAAAATATACAGTAAAAATATACTTTTAGGAATATCACTTTTGTTTGCGATAACTTCTTATGCCCA AAAAACAGTTTACCAATATG
Product: putative alpha-1,2-mannosidase
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Glycosyl Hydrolase Family; Sugar Hydrolase; Glycoside Hydrolase Family Protein; Secreted Protein; Outer Membrane Protein; Immunoreactive; Exported Alpha-1 2-Mannosidase; Antigen; Alpha-1 2-Mannosidase Protein; Lipoprotein
Number of amino acids: Translated: 768; Mature: 768
Protein sequence:
>768_residues MELKKIYKIGHIAISLTLIFLVSCSAQKKLSLQKKQISDMVYPLLDTENSRWFYFSSASRPFGMVNLNPDTEIKGDWGGG YKYTTDTVKGFSHVHEWQMSGVSVMPVTISKENKAAIFKDFYSKFSHKAEVITPGYHSLKLDRYQITAELTSTKRVGFHK YTFPVKGQKAVLFNLNTILGPCENTNGKLEKNNDYELSGSLVLSTNFRRPKPLTVFFKVKTSEPISSVERDDATGNYLIH FDKTKEQVLMKVGISYTSIENANNNIETELPYWDFNKTTADSQKEWSNLLGRIKIEGGTETDQRRFYTDLWHALQGRKMI SDANGAYPDNTGDIFRIGHLPLKADGKPKFNHYNSDAFWGAQWTINNLWGLVYPEIMEEFVYSLMQYYKDGGIIPRGPSG GNDTYVMTGASTTPFIVSAIQKGIVKENLEKIYIALKKNHMPGGIMEKAGYEHNTNIGGGLKYYLEKGYVPYPLPDGNFG SHEDGASQTLEYAYQDWTLAQLAKKLNHEEDYLYFMKRAKNYKNVFDAEIGWMRPKNADGKWRENYDPYQYENGFIESNG AQSTWFVPHDILGLADLMGGKEKAAAKLNAQFETAKKQNYTSGTSHDAELHPEFSRIPVNFGNQPSMQTSNIFTILGRPD LTQYWTRNVVKETFSGLSPATGYNGDEDQGLMGSLNVLLKLGLFQMNGGTDQDAVYQIGSPIFNKITITLNPKYYSGKTF VINAQKNSPENVYIKDIKYNNKHVKDFTLTHKEITNGGELILQMSARK
Sequences:
>Translated_768_residues MELKKIYKIGHIAISLTLIFLVSCSAQKKLSLQKKQISDMVYPLLDTENSRWFYFSSASRPFGMVNLNPDTEIKGDWGGG YKYTTDTVKGFSHVHEWQMSGVSVMPVTISKENKAAIFKDFYSKFSHKAEVITPGYHSLKLDRYQITAELTSTKRVGFHK YTFPVKGQKAVLFNLNTILGPCENTNGKLEKNNDYELSGSLVLSTNFRRPKPLTVFFKVKTSEPISSVERDDATGNYLIH FDKTKEQVLMKVGISYTSIENANNNIETELPYWDFNKTTADSQKEWSNLLGRIKIEGGTETDQRRFYTDLWHALQGRKMI SDANGAYPDNTGDIFRIGHLPLKADGKPKFNHYNSDAFWGAQWTINNLWGLVYPEIMEEFVYSLMQYYKDGGIIPRGPSG GNDTYVMTGASTTPFIVSAIQKGIVKENLEKIYIALKKNHMPGGIMEKAGYEHNTNIGGGLKYYLEKGYVPYPLPDGNFG SHEDGASQTLEYAYQDWTLAQLAKKLNHEEDYLYFMKRAKNYKNVFDAEIGWMRPKNADGKWRENYDPYQYENGFIESNG AQSTWFVPHDILGLADLMGGKEKAAAKLNAQFETAKKQNYTSGTSHDAELHPEFSRIPVNFGNQPSMQTSNIFTILGRPD LTQYWTRNVVKETFSGLSPATGYNGDEDQGLMGSLNVLLKLGLFQMNGGTDQDAVYQIGSPIFNKITITLNPKYYSGKTF VINAQKNSPENVYIKDIKYNNKHVKDFTLTHKEITNGGELILQMSARK >Mature_768_residues MELKKIYKIGHIAISLTLIFLVSCSAQKKLSLQKKQISDMVYPLLDTENSRWFYFSSASRPFGMVNLNPDTEIKGDWGGG YKYTTDTVKGFSHVHEWQMSGVSVMPVTISKENKAAIFKDFYSKFSHKAEVITPGYHSLKLDRYQITAELTSTKRVGFHK YTFPVKGQKAVLFNLNTILGPCENTNGKLEKNNDYELSGSLVLSTNFRRPKPLTVFFKVKTSEPISSVERDDATGNYLIH FDKTKEQVLMKVGISYTSIENANNNIETELPYWDFNKTTADSQKEWSNLLGRIKIEGGTETDQRRFYTDLWHALQGRKMI SDANGAYPDNTGDIFRIGHLPLKADGKPKFNHYNSDAFWGAQWTINNLWGLVYPEIMEEFVYSLMQYYKDGGIIPRGPSG GNDTYVMTGASTTPFIVSAIQKGIVKENLEKIYIALKKNHMPGGIMEKAGYEHNTNIGGGLKYYLEKGYVPYPLPDGNFG SHEDGASQTLEYAYQDWTLAQLAKKLNHEEDYLYFMKRAKNYKNVFDAEIGWMRPKNADGKWRENYDPYQYENGFIESNG AQSTWFVPHDILGLADLMGGKEKAAAKLNAQFETAKKQNYTSGTSHDAELHPEFSRIPVNFGNQPSMQTSNIFTILGRPD LTQYWTRNVVKETFSGLSPATGYNGDEDQGLMGSLNVLLKLGLFQMNGGTDQDAVYQIGSPIFNKITITLNPKYYSGKTF VINAQKNSPENVYIKDIKYNNKHVKDFTLTHKEITNGGELILQMSARK
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87004; Mature: 87004
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELKKIYKIGHIAISLTLIFLVSCSAQKKLSLQKKQISDMVYPLLDTENSRWFYFSSASR CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC PFGMVNLNPDTEIKGDWGGGYKYTTDTVKGFSHVHEWQMSGVSVMPVTISKENKAAIFKD CEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHH FYSKFSHKAEVITPGYHSLKLDRYQITAELTSTKRVGFHKYTFPVKGQKAVLFNLNTILG HHHHHCCCCEEECCCCHHEEEEEEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEHHHCC PCENTNGKLEKNNDYELSGSLVLSTNFRRPKPLTVFFKVKTSEPISSVERDDATGNYLIH CCCCCCCCEECCCCEEEECEEEEEECCCCCCCEEEEEEEECCCCHHHHHCCCCCCCEEEE FDKTKEQVLMKVGISYTSIENANNNIETELPYWDFNKTTADSQKEWSNLLGRIKIEGGTE ECCCHHHHHHHHCCCEEEECCCCCCCEECCCEECCCCCCCCHHHHHHHCCEEEEECCCCC TDQRRFYTDLWHALQGRKMISDANGAYPDNTGDIFRIGHLPLKADGKPKFNHYNSDAFWG HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEECEEECCCCCCCCCCCCCCCEEE AQWTINNLWGLVYPEIMEEFVYSLMQYYKDGGIIPRGPSGGNDTYVMTGASTTPFIVSAI CEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHH QKGIVKENLEKIYIALKKNHMPGGIMEKAGYEHNTNIGGGLKYYLEKGYVPYPLPDGNFG HHHHHHHHHHHEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC SHEDGASQTLEYAYQDWTLAQLAKKLNHEEDYLYFMKRAKNYKNVFDAEIGWMRPKNADG CCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC KWRENYDPYQYENGFIESNGAQSTWFVPHDILGLADLMGGKEKAAAKLNAQFETAKKQNY CCCCCCCCCCCCCCEEECCCCCCEEECCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCC TSGTSHDAELHPEFSRIPVNFGNQPSMQTSNIFTILGRPDLTQYWTRNVVKETFSGLSPA CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCC TGYNGDEDQGLMGSLNVLLKLGLFQMNGGTDQDAVYQIGSPIFNKITITLNPKYYSGKTF CCCCCCCCCCHHHHHHHHHHHCEEEECCCCCHHHHHHHCCCCEEEEEEEECCCEECCEEE VINAQKNSPENVYIKDIKYNNKHVKDFTLTHKEITNGGELILQMSARK EEECCCCCCCEEEEEEEEECCCEEEEEEEEHHHHCCCCEEEEEEECCC >Mature Secondary Structure MELKKIYKIGHIAISLTLIFLVSCSAQKKLSLQKKQISDMVYPLLDTENSRWFYFSSASR CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC PFGMVNLNPDTEIKGDWGGGYKYTTDTVKGFSHVHEWQMSGVSVMPVTISKENKAAIFKD CEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHH FYSKFSHKAEVITPGYHSLKLDRYQITAELTSTKRVGFHKYTFPVKGQKAVLFNLNTILG HHHHHCCCCEEECCCCHHEEEEEEEEEEEECCCCCCCEEEEECCCCCCEEEEEEEHHHCC PCENTNGKLEKNNDYELSGSLVLSTNFRRPKPLTVFFKVKTSEPISSVERDDATGNYLIH CCCCCCCCEECCCCEEEECEEEEEECCCCCCCEEEEEEEECCCCHHHHHCCCCCCCEEEE FDKTKEQVLMKVGISYTSIENANNNIETELPYWDFNKTTADSQKEWSNLLGRIKIEGGTE ECCCHHHHHHHHCCCEEEECCCCCCCEECCCEECCCCCCCCHHHHHHHCCEEEEECCCCC TDQRRFYTDLWHALQGRKMISDANGAYPDNTGDIFRIGHLPLKADGKPKFNHYNSDAFWG HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEEECEEECCCCCCCCCCCCCCCEEE AQWTINNLWGLVYPEIMEEFVYSLMQYYKDGGIIPRGPSGGNDTYVMTGASTTPFIVSAI CEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHHHH QKGIVKENLEKIYIALKKNHMPGGIMEKAGYEHNTNIGGGLKYYLEKGYVPYPLPDGNFG HHHHHHHHHHHEEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC SHEDGASQTLEYAYQDWTLAQLAKKLNHEEDYLYFMKRAKNYKNVFDAEIGWMRPKNADG CCCCCHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC KWRENYDPYQYENGFIESNGAQSTWFVPHDILGLADLMGGKEKAAAKLNAQFETAKKQNY CCCCCCCCCCCCCCEEECCCCCCEEECCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCC TSGTSHDAELHPEFSRIPVNFGNQPSMQTSNIFTILGRPDLTQYWTRNVVKETFSGLSPA CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCC TGYNGDEDQGLMGSLNVLLKLGLFQMNGGTDQDAVYQIGSPIFNKITITLNPKYYSGKTF CCCCCCCCCCHHHHHHHHHHHCEEEECCCCCHHHHHHHCCCCEEEEEEEECCCEECCEEE VINAQKNSPENVYIKDIKYNNKHVKDFTLTHKEITNGGELILQMSARK EEECCCCCCCEEEEEEEEECCCEEEEEEEEHHHHCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA