Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
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Accession | NC_009441 |
Length | 6,096,872 |
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The map label for this gene is 146300857
Identifier: 146300857
GI number: 146300857
Start: 3683032
End: 3685500
Strand: Reverse
Name: 146300857
Synonym: Fjoh_3112
Alternate gene names: NA
Gene position: 3685500-3683032 (Counterclockwise)
Preceding gene: 146300858
Following gene: 146300856
Centisome position: 60.45
GC content: 37.26
Gene sequence:
>2469_bases ATGCTGCATAATTTTTTAAGAAAGGGTTTTGTTTTTATTTCTGTAATTGCCGGATTTTCTGGTTACGCGCAGGATTTAAA ACTGCAATACAATCAGCCTGCGGTTGAATGGACAGAAGCTCTGCCAATTGGAAACGGAACGCTTGGCGCAATGGTTTTTG GTCGCGTAGATTCAGAATTAATTCAATTAAACGAAGCGACTTTATGGAGCGGCGGACCTGTTCAGAAAAATGTAAATCCA AATGCATTTCAAAATCTGGCTCTAATTAGAGAAGCCCTTAAAGCGGAAGATTTTGACAAAGCTTATAATCTGACCAAAAA TATGCAGGGCGCTTATAGTGAAAGTTTTATGCCTTTGGGAGATCTTTTACTAACGCAGGATTTAGGCAGCAAAAAAACGG ATTTTTACAATAGAAGTCTGGACATTCAAACTGGATTAGCAGTGACTAATTTTAAAGCCGACGGCGTAAATTATAAAAGA GAAATCTTTGCATCGGCGCCTGCGAAATGTATTGTAATGAAACTTTCGGCAGACCAGCTGAAAAAACTTTCGGTTTCAAT TGACGCTTCCAGTCTTTTAAAAAATCAAAAAGAAATACAAAATCAGTCATTGGTTTTAAAAGGAAAAGCGCCTTCACATG CCGATCCGAATTATATTGATTACAATAAAGAGCCTGTTATTTATGACGATCCAGCTGGATGCCGCGGAATGCGTTTTGAA TTAATCGTAAAACCAATTGTAAAAGACGGAACGGTAAGTTATGAAGGAAACAAAATAGTGATTAAAAATGCTTCAGAAAT AGTACTTTTTATCTCGGCTGCAACCAGTTTCAACGGATTTGATAAATGTCCCGACAGTCAGGGAAAAGACGAACATGCTT TTGCTGAAAACCCAATTAAAAAAGCATCAGTCAAAAAATATGATATTTTAGTTAAAGAACATCTTCAGGATTTTCAAAAA TTCTTCAATAGAGTTTCTTTACAATTGAATGAAAAAGAAACCCATAAATCCAATCTTCCAACTGATATTCGTTTGGAACA ATATGCCAAAGGAGAAAAAGATGCTGGATTAGAAGCTTTATTTTTTCAATACGGACGTTATTTATTGATTTCTTCATCGC GTACACACAACGCACCAGCCAATTTACAGGGAATCTGGAACAATAAATTGCGTGCGCCGTGGAGCAGTAATTATACAACC AATATCAATTTGCAGATGAATTATTGGCCTGTTGAATCGGCAAGTTTATCAGAATTGTTTTTTCCGCTTGACGATTTTGT AAAAAATGTTTCTGTAACAGGAGCCGAAACTGCCAAAAGTTATTATCATGCCAACGGCTGGGTTTTGCATCATAACTCAG ACATCTGGGCAACGACAAATCCTGTCGGCGATTTTGGAAAAGGAGATCCAATGTGGGCCAACTGGTATATGGGAGCTAAC TGGTTAAGCAGACATTTATGGGAACATTATCAATATACAGGCGACACAGAATATCTTAAAAAAGTATATCCAATTATAAA AGGCGCCGCAGAATTTAGTTTAGACTGGTTGCAACAAGACAAAAACGGCTATTTAGTTACGATGCCATCGACTTCTCCAG AAAATAAATATTTCTATGACGGAAAAAAAGGAGGCGTAGTAACAACGGCTTCTACAATGGATATTGGCATTATAAAAGAT TTGTTTGAAAATACGAGTCAAGCTTCTAAAATTCTAAATATCGACGCTGATTTTAGACAGAAAGTTGATAAAGCAGCCAA TCAATTATTACCTTTTCAGATAGGCGCAAAAGGACAGCTTCAGGAATGGTATAAAGATTTTGAAGACGAAGACCCGCATC ACAGACATACCTCGCATTTGTATGCCTTGCATCCTGCTAATTTAATTTCACCTTTAAACACACCAGAATTAGCCGCAGCA GCTAAGAAAACTTTAGAATTAAGAGGAGACGACGGAACAGGCTGGAGTCTGGCATGGAAAGTAAATATGTGGGCGAGACT TTTGGACGGAAATCATGCTTATAAGTTATTCAAGAATCAGCTGCGATTGACAAAAGATAATGATCCAAAATACAAACGAC AAGGAGGCTGTTATCCCAATCTTTTTGATGCGCATCCGCCATTTCAGATCGATGGCAATTTTGCTGGAACGGCAGGAGTA ATCGAGATGCTGATGCAGAGTCAGAACAATGAAATTCATTTGCTTCCTGCTTTACCAGACGATTGGAAAGAAGGCGAAAT TAAAGGAATTACGGCAAAAGGAAATTTCACTGTAAATATAAAATGGAACGACGGAAAAATGAGCCAGACTAAAATCGTAT CGAATAATGGAGGAACTTGTAAAATAAGATCTTCGGAACCTTTTGTAATTGAAAAACTGAATATCAAAAGCGAGAAATCA TCTATTGGATATACGGCTGTATTTGAGACCAAAAAAGGCACATCTTACATCATAAATCCTCTTCAATAA
Upstream 100 bases:
>100_bases TTATTCTGTTACTGTTTTGAAATTGAAAACGATTTAATTAATTATAAATTATAAATTATCAATTATCAATTATCAATTAT AAATCATTAATTAAAGATAC
Downstream 100 bases:
>100_bases TTTTTCATTTAATAAACTAAAAAATACCATCGTGTTTAAAAATAAGATCTTACTGCCCGTACTTTTTCTTTCGTGTTTTT CTGCATTTGCTCAAATCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Large Secreted Protein; Fibronectin Type III Domain Protein; Twin-Arginine Translocation Pathway Signal; Alpha/Beta Hydrolase Domain-Containing Protein; Alpha-Fucosidase; Glycoside Hydrolase Family Protein; Six-Hairpin Glycosidase; 1 2-Alpha-L-Fucosidase; Ricin B Lectin; Coagulation Factor 5/8 Type Domain-Containing Protein; Trehalose And Maltose Hydrolase-Like Protein; Glycosyl Hydrolase; F5/8 Type C Domain-Containing Protein; Fibronectin Type III Domain-Containing Protein; Candidate Alpha-L-Fucosidase; Glycosyl Hydrolase Family Protein; 1 2-A-L-Fucosidase
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MLHNFLRKGFVFISVIAGFSGYAQDLKLQYNQPAVEWTEALPIGNGTLGAMVFGRVDSELIQLNEATLWSGGPVQKNVNP NAFQNLALIREALKAEDFDKAYNLTKNMQGAYSESFMPLGDLLLTQDLGSKKTDFYNRSLDIQTGLAVTNFKADGVNYKR EIFASAPAKCIVMKLSADQLKKLSVSIDASSLLKNQKEIQNQSLVLKGKAPSHADPNYIDYNKEPVIYDDPAGCRGMRFE LIVKPIVKDGTVSYEGNKIVIKNASEIVLFISAATSFNGFDKCPDSQGKDEHAFAENPIKKASVKKYDILVKEHLQDFQK FFNRVSLQLNEKETHKSNLPTDIRLEQYAKGEKDAGLEALFFQYGRYLLISSSRTHNAPANLQGIWNNKLRAPWSSNYTT NINLQMNYWPVESASLSELFFPLDDFVKNVSVTGAETAKSYYHANGWVLHHNSDIWATTNPVGDFGKGDPMWANWYMGAN WLSRHLWEHYQYTGDTEYLKKVYPIIKGAAEFSLDWLQQDKNGYLVTMPSTSPENKYFYDGKKGGVVTTASTMDIGIIKD LFENTSQASKILNIDADFRQKVDKAANQLLPFQIGAKGQLQEWYKDFEDEDPHHRHTSHLYALHPANLISPLNTPELAAA AKKTLELRGDDGTGWSLAWKVNMWARLLDGNHAYKLFKNQLRLTKDNDPKYKRQGGCYPNLFDAHPPFQIDGNFAGTAGV IEMLMQSQNNEIHLLPALPDDWKEGEIKGITAKGNFTVNIKWNDGKMSQTKIVSNNGGTCKIRSSEPFVIEKLNIKSEKS SIGYTAVFETKKGTSYIINPLQ
Sequences:
>Translated_822_residues MLHNFLRKGFVFISVIAGFSGYAQDLKLQYNQPAVEWTEALPIGNGTLGAMVFGRVDSELIQLNEATLWSGGPVQKNVNP NAFQNLALIREALKAEDFDKAYNLTKNMQGAYSESFMPLGDLLLTQDLGSKKTDFYNRSLDIQTGLAVTNFKADGVNYKR EIFASAPAKCIVMKLSADQLKKLSVSIDASSLLKNQKEIQNQSLVLKGKAPSHADPNYIDYNKEPVIYDDPAGCRGMRFE LIVKPIVKDGTVSYEGNKIVIKNASEIVLFISAATSFNGFDKCPDSQGKDEHAFAENPIKKASVKKYDILVKEHLQDFQK FFNRVSLQLNEKETHKSNLPTDIRLEQYAKGEKDAGLEALFFQYGRYLLISSSRTHNAPANLQGIWNNKLRAPWSSNYTT NINLQMNYWPVESASLSELFFPLDDFVKNVSVTGAETAKSYYHANGWVLHHNSDIWATTNPVGDFGKGDPMWANWYMGAN WLSRHLWEHYQYTGDTEYLKKVYPIIKGAAEFSLDWLQQDKNGYLVTMPSTSPENKYFYDGKKGGVVTTASTMDIGIIKD LFENTSQASKILNIDADFRQKVDKAANQLLPFQIGAKGQLQEWYKDFEDEDPHHRHTSHLYALHPANLISPLNTPELAAA AKKTLELRGDDGTGWSLAWKVNMWARLLDGNHAYKLFKNQLRLTKDNDPKYKRQGGCYPNLFDAHPPFQIDGNFAGTAGV IEMLMQSQNNEIHLLPALPDDWKEGEIKGITAKGNFTVNIKWNDGKMSQTKIVSNNGGTCKIRSSEPFVIEKLNIKSEKS SIGYTAVFETKKGTSYIINPLQ >Mature_822_residues MLHNFLRKGFVFISVIAGFSGYAQDLKLQYNQPAVEWTEALPIGNGTLGAMVFGRVDSELIQLNEATLWSGGPVQKNVNP NAFQNLALIREALKAEDFDKAYNLTKNMQGAYSESFMPLGDLLLTQDLGSKKTDFYNRSLDIQTGLAVTNFKADGVNYKR EIFASAPAKCIVMKLSADQLKKLSVSIDASSLLKNQKEIQNQSLVLKGKAPSHADPNYIDYNKEPVIYDDPAGCRGMRFE LIVKPIVKDGTVSYEGNKIVIKNASEIVLFISAATSFNGFDKCPDSQGKDEHAFAENPIKKASVKKYDILVKEHLQDFQK FFNRVSLQLNEKETHKSNLPTDIRLEQYAKGEKDAGLEALFFQYGRYLLISSSRTHNAPANLQGIWNNKLRAPWSSNYTT NINLQMNYWPVESASLSELFFPLDDFVKNVSVTGAETAKSYYHANGWVLHHNSDIWATTNPVGDFGKGDPMWANWYMGAN WLSRHLWEHYQYTGDTEYLKKVYPIIKGAAEFSLDWLQQDKNGYLVTMPSTSPENKYFYDGKKGGVVTTASTMDIGIIKD LFENTSQASKILNIDADFRQKVDKAANQLLPFQIGAKGQLQEWYKDFEDEDPHHRHTSHLYALHPANLISPLNTPELAAA AKKTLELRGDDGTGWSLAWKVNMWARLLDGNHAYKLFKNQLRLTKDNDPKYKRQGGCYPNLFDAHPPFQIDGNFAGTAGV IEMLMQSQNNEIHLLPALPDDWKEGEIKGITAKGNFTVNIKWNDGKMSQTKIVSNNGGTCKIRSSEPFVIEKLNIKSEKS SIGYTAVFETKKGTSYIINPLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92396; Mature: 92396
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHNFLRKGFVFISVIAGFSGYAQDLKLQYNQPAVEWTEALPIGNGTLGAMVFGRVDSEL CCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCHHHEEECCCHHH IQLNEATLWSGGPVQKNVNPNAFQNLALIREALKAEDFDKAYNLTKNMQGAYSESFMPLG HEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCCHH DLLLTQDLGSKKTDFYNRSLDIQTGLAVTNFKADGVNYKREIFASAPAKCIVMKLSADQL HHHHHHCCCCCCCHHCCCEEEEECCEEEEEEECCCCCHHHHHHHCCCCEEEEEEECHHHH KKLSVSIDASSLLKNQKEIQNQSLVLKGKAPSHADPNYIDYNKEPVIYDDPAGCRGMRFE HHEEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCEECCCCCCEEECCCCCCCCCEEE LIVKPIVKDGTVSYEGNKIVIKNASEIVLFISAATSFNGFDKCPDSQGKDEHAFAENPIK EEEEEHHCCCEEEECCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCC KASVKKYDILVKEHLQDFQKFFNRVSLQLNEKETHKSNLPTDIRLEQYAKGEKDAGLEAL CCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCCCCHHHHHCCCCCCCHHHH FFQYGRYLLISSSRTHNAPANLQGIWNNKLRAPWSSNYTTNINLQMNYWPVESASLSELF HHHCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHH FPLDDFVKNVSVTGAETAKSYYHANGWVLHHNSDIWATTNPVGDFGKGDPMWANWYMGAN CCHHHHHHCCCCCCHHHHHHEEECCCEEEEECCCEEEECCCCCCCCCCCCCEEEEECCHH WLSRHLWEHYQYTGDTEYLKKVYPIIKGAAEFSLDWLQQDKNGYLVTMPSTSPENKYFYD HHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEC GKKGGVVTTASTMDIGIIKDLFENTSQASKILNIDADFRQKVDKAANQLLPFQIGAKGQL CCCCCEEEEECCCCHHHHHHHHHCHHHHHHEEECCHHHHHHHHHHHHHCCCEEECCCCCH QEWYKDFEDEDPHHRHTSHLYALHPANLISPLNTPELAAAAKKTLELRGDDGTGWSLAWK HHHHHCCCCCCCCCCCCCEEEEECCHHHCCCCCCHHHHHHHHHEEEEECCCCCCEEEEEE VNMWARLLDGNHAYKLFKNQLRLTKDNDPKYKRQGGCYPNLFDAHPPFQIDGNFAGTAGV EEEEHHHHCCCHHHHHHHHHHEEECCCCCCHHHCCCCCCCCCCCCCCEEECCCCCCHHHH IEMLMQSQNNEIHLLPALPDDWKEGEIKGITAKGNFTVNIKWNDGKMSQTKIVSNNGGTC HHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEEEEECCCCEE KIRSSEPFVIEKLNIKSEKSSIGYTAVFETKKGTSYIINPLQ EEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEECCCCC >Mature Secondary Structure MLHNFLRKGFVFISVIAGFSGYAQDLKLQYNQPAVEWTEALPIGNGTLGAMVFGRVDSEL CCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCHHHEEECCCHHH IQLNEATLWSGGPVQKNVNPNAFQNLALIREALKAEDFDKAYNLTKNMQGAYSESFMPLG HEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHCCCCCHH DLLLTQDLGSKKTDFYNRSLDIQTGLAVTNFKADGVNYKREIFASAPAKCIVMKLSADQL HHHHHHCCCCCCCHHCCCEEEEECCEEEEEEECCCCCHHHHHHHCCCCEEEEEEECHHHH KKLSVSIDASSLLKNQKEIQNQSLVLKGKAPSHADPNYIDYNKEPVIYDDPAGCRGMRFE HHEEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCEECCCCCCEEECCCCCCCCCEEE LIVKPIVKDGTVSYEGNKIVIKNASEIVLFISAATSFNGFDKCPDSQGKDEHAFAENPIK EEEEEHHCCCEEEECCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCC KASVKKYDILVKEHLQDFQKFFNRVSLQLNEKETHKSNLPTDIRLEQYAKGEKDAGLEAL CCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCCCCHHHHHCCCCCCCHHHH FFQYGRYLLISSSRTHNAPANLQGIWNNKLRAPWSSNYTTNINLQMNYWPVESASLSELF HHHCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHH FPLDDFVKNVSVTGAETAKSYYHANGWVLHHNSDIWATTNPVGDFGKGDPMWANWYMGAN CCHHHHHHCCCCCCHHHHHHEEECCCEEEEECCCEEEECCCCCCCCCCCCCEEEEECCHH WLSRHLWEHYQYTGDTEYLKKVYPIIKGAAEFSLDWLQQDKNGYLVTMPSTSPENKYFYD HHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEC GKKGGVVTTASTMDIGIIKDLFENTSQASKILNIDADFRQKVDKAANQLLPFQIGAKGQL CCCCCEEEEECCCCHHHHHHHHHCHHHHHHEEECCHHHHHHHHHHHHHCCCEEECCCCCH QEWYKDFEDEDPHHRHTSHLYALHPANLISPLNTPELAAAAKKTLELRGDDGTGWSLAWK HHHHHCCCCCCCCCCCCCEEEEECCHHHCCCCCCHHHHHHHHHEEEEECCCCCCEEEEEE VNMWARLLDGNHAYKLFKNQLRLTKDNDPKYKRQGGCYPNLFDAHPPFQIDGNFAGTAGV EEEEHHHHCCCHHHHHHHHHHEEECCCCCCHHHCCCCCCCCCCCCCCEEECCCCCCHHHH IEMLMQSQNNEIHLLPALPDDWKEGEIKGITAKGNFTVNIKWNDGKMSQTKIVSNNGGTC HHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEEEEECCCCEE KIRSSEPFVIEKLNIKSEKSSIGYTAVFETKKGTSYIINPLQ EEECCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA