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The map label for this gene is xynD [H]

Identifier: 146300854

GI number: 146300854

Start: 3677164

End: 3679098

Strand: Reverse

Name: xynD [H]

Synonym: Fjoh_3109

Alternate gene names: 146300854

Gene position: 3679098-3677164 (Counterclockwise)

Preceding gene: 146300855

Following gene: 146300852

Centisome position: 60.34

GC content: 35.45

Gene sequence:

>1935_bases
ATGGAAAGATTGGTTTTCTATTTTCTGATATTAATGACTGTTTTTAGTCCGGCGAAAGCTCAAAATACGGCAAGTGGAAT
GCCGCCTGTTCTTGCTGAAAAAGATTTGACGGCTTATTTATTTGTTTATTTTATTGGAAATAAAGTCGAAGAAGAAGCGG
TTAATTATGCCGTAAGTACAGATGGTTATCATTATTACAGTCTTAATAATAATAAACCCGTTTTAGACAGTAAAACAATC
AGTTCTACAGGAGGTGTTCGAGATCCGCATATCCTGCGCGGTGAAGACGGCAAGACATTTTATATGGTTTTGACTGATAT
GACTTCTTCCAAAGGCTGGGACAGCAATCGTGCAATGGTCTTGCTTAAGAGCACTGATTTGGTAAACTGGAAAAGCAGTG
TTGTTAATATTCAAAAAGCATTTTCGGGAAACGAAGATTTAAAACGAGTTTGGGCACCACAGACGATTTATGATACAAAA
GCGGGTAAATACATGATTTATTTTAGTATGAAACATGGCAATGAACCTGATAAAATCTATTACGCTTACGCGAATGCGGA
TTTCACAGCTTTAGAAAGTGCTCCAAAACTGCTTTTCGTTCCAAAATCAAAAGGTGCGTGTATTGATGGCGATATTATTC
TAAAAGACGGTGTGTATCATCTTTTCTACAAAACAGAATCAGAAACGGCAGGAATAAAAACAGCCGTAACGAACGATTTA
ACTTCTGGAAATTGGACTGAAAATGATAATTATCTGCAGCAAACCAAAGAGAAAGTAGAAGGTTCGAGTATCTTTAAACT
CAATAATTCGGATGAATATATTTTAATGTACGATTTATATTCAAAAGGAAAATATCAGTTTACGAAAACCAAAGATTTAG
AAAATTTCACGGTTATTGATACTGATATTTCAATGGATTTTAAACCGCGTCACGGAACGATTCTTCCGATTACGCGTTCT
GAATTAAAACGAATTACTGCAAAATGGGGAACGCCTTCGCAGCTTTCAAAAATAAATAACAATCCAGTTTTAGAAGGTTA
TTACGCAGATCCTGAAATTCTGTATTCAAACAAAACTAAAAAATATTATATCTATCCTACAAGCGACGGATTTAATGATT
GGTCAGGATATTATTTCAAAACATTTTCGTCTGATAATTTAGTAGATTGGAAAGATGAAGGTATAATTCTAGACCTAAAA
AAAGACGTGTCTTGGGCAAACAGAAATGCCTGGGCGCCTTGTATTGTAGAGAAAAAAATAAAAGGAAAATACCAATACTT
CTATTATTTTACGGCGGCACAAAAAATTGGTGTTGCCGTTTCCGATAATCCAACTGGACCTTTTAAAGACAGCGGAAAAG
CAATCGTAGCAGAAAGACCTCAAGGCATAAAAGACGGTCAGGAAATTGATCCTGATGTTTTTACAGATCCTAAAACAGGG
AAAAGTTATTTGTATTGGGGAAATATGTACATGGCCGCTGCAGAATTAAATCCGGATATGGTTTCGCTAAAAGAAGGAAG
TACTAAAATAATTGAAGTAAATAAAAGCTTTAGAGAAGGAACGTATGTAATTTACAGAAATGGCAAATATTATTTCTTTT
GGAGTGAAGACGATACAAGAAGTCCAAATTACAAAGTAAGATACGGTATTTCAGATTCACCGCTTGGACCTCTTGAAATA
CCGCAGAATAATATTGTCATTCAAGGAATTCCAAAACAGGGAATTTATGCAACGGGACATAATTCAGTTTTGCAGATTCC
CGGAAAAGATGAATGGTATATTGTGTATCATAGATTTTCGTATCCAACAGGTATTAAAATGGGACGTGCAGGCGGTTTTC
ACCGCGAGGTTTGTATCGATAAATTAGAGTTTAATACGGAAGGATCAATAAAAGAAGTAGTTGCTACTCATACCGGAATT
GAAAGCTTAAGGTAG

Upstream 100 bases:

>100_bases
ATATGTGGACAGGAGAAAAATCAAAAGTGACTTCAACAGAAATTGGTACCGATTTAAAACCGCACAGTTCTGTTTTGTAC
CAATTAAAAAGTAAAAAATA

Downstream 100 bases:

>100_bases
GATTTTTATTGTTTTGTAAAGGAAGTAAAATCAGTAAAATCACGAGTTTGTATATTATAAAAAAGCACGCGGAATCTTTA
TAATATCCGCGTGGCATTTT

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: AXH; AXH-m2,3; AXH-m23; Alpha-L-arabinofuranosidase; AF [H]

Number of amino acids: Translated: 644; Mature: 644

Protein sequence:

>644_residues
MERLVFYFLILMTVFSPAKAQNTASGMPPVLAEKDLTAYLFVYFIGNKVEEEAVNYAVSTDGYHYYSLNNNKPVLDSKTI
SSTGGVRDPHILRGEDGKTFYMVLTDMTSSKGWDSNRAMVLLKSTDLVNWKSSVVNIQKAFSGNEDLKRVWAPQTIYDTK
AGKYMIYFSMKHGNEPDKIYYAYANADFTALESAPKLLFVPKSKGACIDGDIILKDGVYHLFYKTESETAGIKTAVTNDL
TSGNWTENDNYLQQTKEKVEGSSIFKLNNSDEYILMYDLYSKGKYQFTKTKDLENFTVIDTDISMDFKPRHGTILPITRS
ELKRITAKWGTPSQLSKINNNPVLEGYYADPEILYSNKTKKYYIYPTSDGFNDWSGYYFKTFSSDNLVDWKDEGIILDLK
KDVSWANRNAWAPCIVEKKIKGKYQYFYYFTAAQKIGVAVSDNPTGPFKDSGKAIVAERPQGIKDGQEIDPDVFTDPKTG
KSYLYWGNMYMAAAELNPDMVSLKEGSTKIIEVNKSFREGTYVIYRNGKYYFFWSEDDTRSPNYKVRYGISDSPLGPLEI
PQNNIVIQGIPKQGIYATGHNSVLQIPGKDEWYIVYHRFSYPTGIKMGRAGGFHREVCIDKLEFNTEGSIKEVVATHTGI
ESLR

Sequences:

>Translated_644_residues
MERLVFYFLILMTVFSPAKAQNTASGMPPVLAEKDLTAYLFVYFIGNKVEEEAVNYAVSTDGYHYYSLNNNKPVLDSKTI
SSTGGVRDPHILRGEDGKTFYMVLTDMTSSKGWDSNRAMVLLKSTDLVNWKSSVVNIQKAFSGNEDLKRVWAPQTIYDTK
AGKYMIYFSMKHGNEPDKIYYAYANADFTALESAPKLLFVPKSKGACIDGDIILKDGVYHLFYKTESETAGIKTAVTNDL
TSGNWTENDNYLQQTKEKVEGSSIFKLNNSDEYILMYDLYSKGKYQFTKTKDLENFTVIDTDISMDFKPRHGTILPITRS
ELKRITAKWGTPSQLSKINNNPVLEGYYADPEILYSNKTKKYYIYPTSDGFNDWSGYYFKTFSSDNLVDWKDEGIILDLK
KDVSWANRNAWAPCIVEKKIKGKYQYFYYFTAAQKIGVAVSDNPTGPFKDSGKAIVAERPQGIKDGQEIDPDVFTDPKTG
KSYLYWGNMYMAAAELNPDMVSLKEGSTKIIEVNKSFREGTYVIYRNGKYYFFWSEDDTRSPNYKVRYGISDSPLGPLEI
PQNNIVIQGIPKQGIYATGHNSVLQIPGKDEWYIVYHRFSYPTGIKMGRAGGFHREVCIDKLEFNTEGSIKEVVATHTGI
ESLR
>Mature_644_residues
MERLVFYFLILMTVFSPAKAQNTASGMPPVLAEKDLTAYLFVYFIGNKVEEEAVNYAVSTDGYHYYSLNNNKPVLDSKTI
SSTGGVRDPHILRGEDGKTFYMVLTDMTSSKGWDSNRAMVLLKSTDLVNWKSSVVNIQKAFSGNEDLKRVWAPQTIYDTK
AGKYMIYFSMKHGNEPDKIYYAYANADFTALESAPKLLFVPKSKGACIDGDIILKDGVYHLFYKTESETAGIKTAVTNDL
TSGNWTENDNYLQQTKEKVEGSSIFKLNNSDEYILMYDLYSKGKYQFTKTKDLENFTVIDTDISMDFKPRHGTILPITRS
ELKRITAKWGTPSQLSKINNNPVLEGYYADPEILYSNKTKKYYIYPTSDGFNDWSGYYFKTFSSDNLVDWKDEGIILDLK
KDVSWANRNAWAPCIVEKKIKGKYQYFYYFTAAQKIGVAVSDNPTGPFKDSGKAIVAERPQGIKDGQEIDPDVFTDPKTG
KSYLYWGNMYMAAAELNPDMVSLKEGSTKIIEVNKSFREGTYVIYRNGKYYFFWSEDDTRSPNYKVRYGISDSPLGPLEI
PQNNIVIQGIPKQGIYATGHNSVLQIPGKDEWYIVYHRFSYPTGIKMGRAGGFHREVCIDKLEFNTEGSIKEVVATHTGI
ESLR

Specific function: Cleaves arabinose units from O-2- or O-3-monosubstituted xylose residues, thereby assisting in arabinoxylan (AX) and short- chain arabinoxylo-oligosaccharide (AXOS) degradation. Preferres wheat flour xylan over oat spelt xylan as substrate. Does not displ

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBM6 (carbohydrate binding type-6) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR006584
- InterPro:   IPR008979
- InterPro:   IPR006710 [H]

Pfam domain/function: PF03422 CBM_6; PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 73170; Mature: 73170

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLVFYFLILMTVFSPAKAQNTASGMPPVLAEKDLTAYLFVYFIGNKVEEEAVNYAVST
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCHHHHHHEEEEEC
DGYHYYSLNNNKPVLDSKTISSTGGVRDPHILRGEDGKTFYMVLTDMTSSKGWDSNRAMV
CCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCEEE
LLKSTDLVNWKSSVVNIQKAFSGNEDLKRVWAPQTIYDTKAGKYMIYFSMKHGNEPDKIY
EEECCCCCCCHHHHEEEEHHHCCCHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCEEE
YAYANADFTALESAPKLLFVPKSKGACIDGDIILKDGVYHLFYKTESETAGIKTAVTNDL
EEEECCCEEECCCCCCEEEEECCCCCEECCCEEEECCEEEEEEECCCCCCCEEEEEECCC
TSGNWTENDNYLQQTKEKVEGSSIFKLNNSDEYILMYDLYSKGKYQFTKTKDLENFTVID
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCEEEEE
TDISMDFKPRHGTILPITRSELKRITAKWGTPSQLSKINNNPVLEGYYADPEILYSNKTK
ECEEEEECCCCCEEEEECHHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCEEEECCCCE
KYYIYPTSDGFNDWSGYYFKTFSSDNLVDWKDEGIILDLKKDVSWANRNAWAPCIVEKKI
EEEEEECCCCCCCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCC
KGKYQYFYYFTAAQKIGVAVSDNPTGPFKDSGKAIVAERPQGIKDGQEIDPDVFTDPKTG
CCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
KSYLYWGNMYMAAAELNPDMVSLKEGSTKIIEVNKSFREGTYVIYRNGKYYFFWSEDDTR
CEEEEECCEEEEEEECCCCEEEECCCCEEEEEECCCCCCCEEEEEECCEEEEEECCCCCC
SPNYKVRYGISDSPLGPLEIPQNNIVIQGIPKQGIYATGHNSVLQIPGKDEWYIVYHRFS
CCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEECCCCEEECCCCCCEEEEEEEEC
YPTGIKMGRAGGFHREVCIDKLEFNTEGSIKEVVATHTGIESLR
CCCCCEECCCCCCHHHHEEEEEECCCCCCHHHHHHHHCCHHHCC
>Mature Secondary Structure
MERLVFYFLILMTVFSPAKAQNTASGMPPVLAEKDLTAYLFVYFIGNKVEEEAVNYAVST
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCHHHHHHEEEEEC
DGYHYYSLNNNKPVLDSKTISSTGGVRDPHILRGEDGKTFYMVLTDMTSSKGWDSNRAMV
CCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCEEE
LLKSTDLVNWKSSVVNIQKAFSGNEDLKRVWAPQTIYDTKAGKYMIYFSMKHGNEPDKIY
EEECCCCCCCHHHHEEEEHHHCCCHHHHHHCCCCEEEECCCCCEEEEEEECCCCCCCEEE
YAYANADFTALESAPKLLFVPKSKGACIDGDIILKDGVYHLFYKTESETAGIKTAVTNDL
EEEECCCEEECCCCCCEEEEECCCCCEECCCEEEECCEEEEEEECCCCCCCEEEEEECCC
TSGNWTENDNYLQQTKEKVEGSSIFKLNNSDEYILMYDLYSKGKYQFTKTKDLENFTVID
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCEEEEEECCCCCCEEEEE
TDISMDFKPRHGTILPITRSELKRITAKWGTPSQLSKINNNPVLEGYYADPEILYSNKTK
ECEEEEECCCCCEEEEECHHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCEEEECCCCE
KYYIYPTSDGFNDWSGYYFKTFSSDNLVDWKDEGIILDLKKDVSWANRNAWAPCIVEKKI
EEEEEECCCCCCCCCCEEEEEECCCCEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCC
KGKYQYFYYFTAAQKIGVAVSDNPTGPFKDSGKAIVAERPQGIKDGQEIDPDVFTDPKTG
CCEEEEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
KSYLYWGNMYMAAAELNPDMVSLKEGSTKIIEVNKSFREGTYVIYRNGKYYFFWSEDDTR
CEEEEECCEEEEEEECCCCEEEECCCCEEEEEECCCCCCCEEEEEECCEEEEEECCCCCC
SPNYKVRYGISDSPLGPLEIPQNNIVIQGIPKQGIYATGHNSVLQIPGKDEWYIVYHRFS
CCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEECCCCEEECCCCCCEEEEEEEEC
YPTGIKMGRAGGFHREVCIDKLEFNTEGSIKEVVATHTGIESLR
CCCCCEECCCCCCHHHHEEEEEECCCCCCHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1938968 [H]