Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 146300728

GI number: 146300728

Start: 3531151

End: 3531543

Strand: Direct

Name: ssb [H]

Synonym: Fjoh_2979

Alternate gene names: 146300728

Gene position: 3531151-3531543 (Clockwise)

Preceding gene: 146300726

Following gene: 146300729

Centisome position: 57.92

GC content: 50.13

Gene sequence:

>393_bases
ATGAACATCATCGGAAGAGTAACAAAAGACGCAGAGGTACGCACCTTGTCAGGAAACAGACAGGTCGTGAATTTTTCAAT
AGCGACAAACGATAGCTACAGAAGCAAGGAGGGCGAGCGAGTGGAACAGACCACTTACTTCGACTGCGCCTACTGGATTA
GCCCGAAAGTAGCGGAAATACTGAGAAAGGGAACTCTTGTGGAACTGTCAGGCAGGGTAAGCGCAAGAGCATGGAAAGGA
AGCGACGGGGAACTGCATGCGGGACTGAACTTCAATACCTCGCAGATTAAGCTGCACGGAGGCGTAAAAAAGGAACAGGG
CGAAGTTACGGCAACACAGAACAAAAGCAGCAGACCTGCTGTGCAGGAACCTGAGGAAGACCTGCCGTTTTAA

Upstream 100 bases:

>100_bases
ATAAAATATTGGAAGCGGAAAATGAAACAAAACAGCTCCACCTCGTCATTGCCGAATAAATAAAATTTCAAAAAAAATTA
ATCCTTAAAAATCAGAAATC

Downstream 100 bases:

>100_bases
GGCTCACATAGGAATTAATATCAAGTTTCAACTTTAAAACAATTATCATGGCACACAATATCAATTACAACAGCAGCACA
GGAAATTATTCATTTTTCAG

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MNIIGRVTKDAEVRTLSGNRQVVNFSIATNDSYRSKEGERVEQTTYFDCAYWISPKVAEILRKGTLVELSGRVSARAWKG
SDGELHAGLNFNTSQIKLHGGVKKEQGEVTATQNKSSRPAVQEPEEDLPF

Sequences:

>Translated_130_residues
MNIIGRVTKDAEVRTLSGNRQVVNFSIATNDSYRSKEGERVEQTTYFDCAYWISPKVAEILRKGTLVELSGRVSARAWKG
SDGELHAGLNFNTSQIKLHGGVKKEQGEVTATQNKSSRPAVQEPEEDLPF
>Mature_130_residues
MNIIGRVTKDAEVRTLSGNRQVVNFSIATNDSYRSKEGERVEQTTYFDCAYWISPKVAEILRKGTLVELSGRVSARAWKG
SDGELHAGLNFNTSQIKLHGGVKKEQGEVTATQNKSSRPAVQEPEEDLPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 14427; Mature: 14427

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIGRVTKDAEVRTLSGNRQVVNFSIATNDSYRSKEGERVEQTTYFDCAYWISPKVAEI
CCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCHHHHHH
LRKGTLVELSGRVSARAWKGSDGELHAGLNFNTSQIKLHGGVKKEQGEVTATQNKSSRPA
HHCCCEEEECCCEEEEEECCCCCCEEECCCCCCCEEEEECCCCCCCCCEEEECCCCCCCC
VQEPEEDLPF
CCCCCCCCCC
>Mature Secondary Structure
MNIIGRVTKDAEVRTLSGNRQVVNFSIATNDSYRSKEGERVEQTTYFDCAYWISPKVAEI
CCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCHHHHHH
LRKGTLVELSGRVSARAWKGSDGELHAGLNFNTSQIKLHGGVKKEQGEVTATQNKSSRPA
HHCCCEEEECCCEEEEEECCCCCCEEECCCCCCCEEEEECCCCCCCCCEEEECCCCCCCC
VQEPEEDLPF
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]