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The map label for this gene is ydhM [C]

Identifier: 146300714

GI number: 146300714

Start: 3515460

End: 3515987

Strand: Reverse

Name: ydhM [C]

Synonym: Fjoh_2965

Alternate gene names: 146300714

Gene position: 3515987-3515460 (Counterclockwise)

Preceding gene: 146300715

Following gene: 146300713

Centisome position: 57.67

GC content: 27.65

Gene sequence:

>528_bases
ATGCTCCCTAAAGAACGAATTTTAGAAAAGACTTTTACTTTATTTCACAAACAAGGTTATAATGCTACGGGAATCAATCA
GATTATTGAAGAAGCGAAAGTAGCCAAAGCAAGCTTTTATCAACATTTTAAATCAAAAGAAGATTTATGTGTGGCTTTTT
TGAATCAGCGTCATTCTTTTTGGTTTGATGAACTGGAGAAATTTACTTTAAATGCAGAAGACTTAAATTCTAAAGTTTTA
AGCTCTTTTGACTTTTTAATTTTCATGAATGCAAAAGAAAATTTTAGAGGATGCAGTTTTCTTAATATACTTTCTGAAAT
TCCGCCTGATAATAGTAAAATACGCAGCGTTATTCAAAGTCATAAAAGTGATTTGCGGAATTATTTTAGGGAAATTTTAA
AAGAGGAACAACTATCAGATCATGTGTATTTATTATTTGAAAGCTGTATAATAGAAAGTCAGTTGTTTAAATCAAACGAG
TTAATAGAACAGTCAAAAAAAATAATTCAAACTTTAATTTTAAAATAA

Upstream 100 bases:

>100_bases
GCACTGTGGTGCGTCTTTTTTTTGAAATTTTTTAAAACAAACAGACAAGTCTGTCTATTTGTTTTAAAAATTATTATATT
TGTATTCTAATTTATTTGAA

Downstream 100 bases:

>100_bases
TGGAACAGAAATTACCATTGCCGCCTTTCACTTTAGAAACCGCAATAGAAAAAATTCAACTGGCAGAAGATGCGTGGAAC
AGTCAGGATCCGGAAAGAGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Regulatory Protein; TetR-Family Transcriptional Regulator; Methionine And Cysteine Biosynthesis Regulator; Tetr Family Transcriptional Regulator; TetR-Type Transcriptional Regulator Of Sulfur Metabolism; Transcriptional Regulator Protein TetR Family; TetR-Family Protein Transcriptional Regulator; Transcriptional Regulatory Protein; Regulatory Protein Tetr; Transcriptional Regulator Tetr Family; Transcriptional Regulator Of TetR Family Protein; TetR/AcrR Family Transcriptional Regulator; Transcriptional Repressor; TetR/AcrR-Family Trancriptional Regulatory Protein

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MLPKERILEKTFTLFHKQGYNATGINQIIEEAKVAKASFYQHFKSKEDLCVAFLNQRHSFWFDELEKFTLNAEDLNSKVL
SSFDFLIFMNAKENFRGCSFLNILSEIPPDNSKIRSVIQSHKSDLRNYFREILKEEQLSDHVYLLFESCIIESQLFKSNE
LIEQSKKIIQTLILK

Sequences:

>Translated_175_residues
MLPKERILEKTFTLFHKQGYNATGINQIIEEAKVAKASFYQHFKSKEDLCVAFLNQRHSFWFDELEKFTLNAEDLNSKVL
SSFDFLIFMNAKENFRGCSFLNILSEIPPDNSKIRSVIQSHKSDLRNYFREILKEEQLSDHVYLLFESCIIESQLFKSNE
LIEQSKKIIQTLILK
>Mature_175_residues
MLPKERILEKTFTLFHKQGYNATGINQIIEEAKVAKASFYQHFKSKEDLCVAFLNQRHSFWFDELEKFTLNAEDLNSKVL
SSFDFLIFMNAKENFRGCSFLNILSEIPPDNSKIRSVIQSHKSDLRNYFREILKEEQLSDHVYLLFESCIIESQLFKSNE
LIEQSKKIIQTLILK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20623; Mature: 20623

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPKERILEKTFTLFHKQGYNATGINQIIEEAKVAKASFYQHFKSKEDLCVAFLNQRHSF
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH
WFDELEKFTLNAEDLNSKVLSSFDFLIFMNAKENFRGCSFLNILSEIPPDNSKIRSVIQS
HHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
HKSDLRNYFREILKEEQLSDHVYLLFESCIIESQLFKSNELIEQSKKIIQTLILK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLPKERILEKTFTLFHKQGYNATGINQIIEEAKVAKASFYQHFKSKEDLCVAFLNQRHSF
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCH
WFDELEKFTLNAEDLNSKVLSSFDFLIFMNAKENFRGCSFLNILSEIPPDNSKIRSVIQS
HHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
HKSDLRNYFREILKEEQLSDHVYLLFESCIIESQLFKSNELIEQSKKIIQTLILK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA