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The map label for this gene is yciO [C]

Identifier: 146300671

GI number: 146300671

Start: 3464055

End: 3464675

Strand: Reverse

Name: yciO [C]

Synonym: Fjoh_2922

Alternate gene names: 146300671

Gene position: 3464675-3464055 (Counterclockwise)

Preceding gene: 146300672

Following gene: 146300667

Centisome position: 56.83

GC content: 32.69

Gene sequence:

>621_bases
ATGGCAGAATTTATAAAAATATACCCAGATAAACCTAGCGAAGCTGCTATTGCAAAAGTAGTGAAAGTGCTTCAAAATGG
CGGATTGGTAATTTATCCAACAGATACTGTTTACGGTTTAGGTTGTGATATTACCAATTCGAGAGCTTTAGAGAAAATAG
CAAAAATTAAAGGAGTAAAATTAGAAAAAGCTAATTTCTCATTTATTTGTCATGATTTGAGTAACTTATCAGATTATGTG
CGTCAAATCGATACTTCAACTTTTAAAATATTAAAGAGAGCTTTACCAGGACCTTATACTTTTATTTTACCAGGGAATAA
CAACCTGCCAAAAGAGTTTAAAAAGAAAACTACTGTGGGTATTCGTGTTCCTGATAATAATATTGTATTAGAAATTGTAC
GCCAGTTAGGAAATCCTATAGTTTCGACTTCGATTCGAGATGAAGATGATGTAATTGAATACACAACAGATCCTGAATTG
ATTTTTGAAAAATGGCAGAATCTAGTCGATATGGTAATCGATGGCGGTTATGGAGATAATGTTGGTTCAACCATTATTGA
TCTCTCAGAACATGAACCAATTGTTGTTAGAGAAGGGAAAGGTGATATCGATATTTTGTAA

Upstream 100 bases:

>100_bases
ATATTTGTCATCTGATACTGAGGGTTTAAAAAATAAACATAGGTTTCGGCTTCGCTCAGCCTTACGAAATCTGAAACAAA
TAAAAACTTGAAAAAAAACT

Downstream 100 bases:

>100_bases
ATAAACACTGAAATTGTGTAAAAAATTAAAAAATATAACTAACTTTAGTATAGTTAAAATTTAGTTAGTTAATAAAAATA
ATGCTATTCTTGATTTATAT

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MAEFIKIYPDKPSEAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVKLEKANFSFICHDLSNLSDYV
RQIDTSTFKILKRALPGPYTFILPGNNNLPKEFKKKTTVGIRVPDNNIVLEIVRQLGNPIVSTSIRDEDDVIEYTTDPEL
IFEKWQNLVDMVIDGGYGDNVGSTIIDLSEHEPIVVREGKGDIDIL

Sequences:

>Translated_206_residues
MAEFIKIYPDKPSEAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVKLEKANFSFICHDLSNLSDYV
RQIDTSTFKILKRALPGPYTFILPGNNNLPKEFKKKTTVGIRVPDNNIVLEIVRQLGNPIVSTSIRDEDDVIEYTTDPEL
IFEKWQNLVDMVIDGGYGDNVGSTIIDLSEHEPIVVREGKGDIDIL
>Mature_205_residues
AEFIKIYPDKPSEAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVKLEKANFSFICHDLSNLSDYVR
QIDTSTFKILKRALPGPYTFILPGNNNLPKEFKKKTTVGIRVPDNNIVLEIVRQLGNPIVSTSIRDEDDVIEYTTDPELI
FEKWQNLVDMVIDGGYGDNVGSTIIDLSEHEPIVVREGKGDIDIL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=206, Percent_Identity=39.8058252427184, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI2367210, Length=133, Percent_Identity=29.3233082706767, Blast_Score=65, Evalue=3e-12,
Organism=Drosophila melanogaster, GI78707274, Length=122, Percent_Identity=32.7868852459016, Blast_Score=71, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22910; Mature: 22778

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEFIKIYPDKPSEAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVK
CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCHHHHHHHHHHCCCE
LEKANFSFICHDLSNLSDYVRQIDTSTFKILKRALPGPYTFILPGNNNLPKEFKKKTTVG
EECCCCEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCEEE
IRVPDNNIVLEIVRQLGNPIVSTSIRDEDDVIEYTTDPELIFEKWQNLVDMVIDGGYGDN
EEECCCHHHHHHHHHHCCCEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCC
VGSTIIDLSEHEPIVVREGKGDIDIL
CCCEEEECCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
AEFIKIYPDKPSEAAIAKVVKVLQNGGLVIYPTDTVYGLGCDITNSRALEKIAKIKGVK
CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCHHHHHHHHHHCCCE
LEKANFSFICHDLSNLSDYVRQIDTSTFKILKRALPGPYTFILPGNNNLPKEFKKKTTVG
EECCCCEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCEEE
IRVPDNNIVLEIVRQLGNPIVSTSIRDEDDVIEYTTDPELIFEKWQNLVDMVIDGGYGDN
EEECCCHHHHHHHHHHCCCEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCC
VGSTIIDLSEHEPIVVREGKGDIDIL
CCCEEEECCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]