| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300642
Identifier: 146300642
GI number: 146300642
Start: 3432722
End: 3434200
Strand: Reverse
Name: 146300642
Synonym: Fjoh_2893
Alternate gene names: NA
Gene position: 3434200-3432722 (Counterclockwise)
Preceding gene: 146300643
Following gene: 146300641
Centisome position: 56.33
GC content: 33.81
Gene sequence:
>1479_bases ATGAAAAATATAAAAATAACACTTTCATTATTATTGGTGATAAGTCTTAGCAGCTGTGATGAATTTCTTTCTGAAATTCC AGACAATAGAACACAGATTGATACACCAGAAAAAATATCTGAATTATTAGTTACAGCATATCCAAGTAAAAGCTATGCAG TAATTGGAGAAACAATGTCTGATAACGTATTTGACAGTGAGATGACATCATCTGATGTTGATAACAGACAAAGTTTTAAC TGGGAAATGCAGACTCAATTAGGACCAGATACCGAAGCTGACTTCTGGAATGCATGTTATGAGGCAATTGCAGCTTCAAA CCAGGCATTAGTTGCAATTGATGAACTTGGAAGCCCGGAAAGTTTAAATCCGCAAAAAGGAGAAGCCTTAATTGCAAGAG CTTACAATCATTTTATGCTGGTTTCATACTGGTCACAAAGATACAATCCTTCAAGTGCAGCAACAGATTTAGGTGTTCCG TATGTAACAAAACCAGAAGGTGCATTATTGGCTCAATACAAACGTAACTCTGTTAAAGAGGTATTTGATTTAATCGAGCA GGATATTATCGAAGGAATGAAATACATAACAAACAATTACAAAGAGCCTAAATATCACTTTAATATTGATGCAGCAAAAG CATTTGCATGTCGTTTTTATTTAATAAAAGGAGATTGGGATAAAGTACTTGAATATTCTAAAGGATTAGGTTCTAAACCA ACAACTCTTAGAGATTATGTAGCTTTTAATGCTGCAGCTTCTGCTCAAAAACCGCTAGAATATTCAAAAGCAGAACAGCC TACAAACTTATTAGTAGCTTATCCAAACTCAACTGCAAGAAGAGGATACACAAATAGATTTTACCTTTCTGATAACAGAT CAGATGAAATCTTAGGATCAGATACTAACATTTGGGGAAAACCATGGTTAATTTATACATCATCATTTTATGAAAACAAT GTACTTATCCCTAAGTTTTATGAATACTTTAAATATACTAACGTAACAGCTGGTATTGGAGAAGCTTACACAGGAGTAGT TCTTTTAAGTAATGATGAGTTTTTCTTAAACAGAATTGAGGCTTATGTAATGAAAAATCAGTTTGCAGAAGCTAATGCAG GATTAGAATATCTCTTCAGTCTTAGAACACAAGGATATAATGCGGCAACTGATAAAATTACAGAAGCAAACATTGCAGCT ATGTATCCGGTTATTGCAGACGAGTACACACCATTCTATACTTTAAGTCCTTTGCAGGCATCATACATCAAAGCAATTGC AGAAGCAAGAAGAAGAGAGTATATCCAGGAAGGATTAAGATGGTTTGATATTAAACGTTTTAACCTTGTAGTAGAACATA TTACTAAAGAAAATGGAAAAGCAGTTAGGACTAATGTTTTAGTTAAAGATGACAAACGAAGAGCGTTGCAAATACCTCAA AGAGCATCTGATAACGGAATCGAAAAAAATCCTAGATAA
Upstream 100 bases:
>100_bases ACGGTCAGGATCCTGAGTTTCGTAATACAGGAGGTGTTGCTTTCCCAATCACTTCTCAGTACACATTTACGTTAAATGTT TCATTCTAATTATAATTAAT
Downstream 100 bases:
>100_bases AAATTTAACATTAATGATTATGAAAATATTACAAAAATATAGAGCAGTTGCAATGATTTCAGTATCAATGTTGTTTGCTG CTTGTGCTCAGGAAGATCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 492; Mature: 492
Protein sequence:
>492_residues MKNIKITLSLLLVISLSSCDEFLSEIPDNRTQIDTPEKISELLVTAYPSKSYAVIGETMSDNVFDSEMTSSDVDNRQSFN WEMQTQLGPDTEADFWNACYEAIAASNQALVAIDELGSPESLNPQKGEALIARAYNHFMLVSYWSQRYNPSSAATDLGVP YVTKPEGALLAQYKRNSVKEVFDLIEQDIIEGMKYITNNYKEPKYHFNIDAAKAFACRFYLIKGDWDKVLEYSKGLGSKP TTLRDYVAFNAAASAQKPLEYSKAEQPTNLLVAYPNSTARRGYTNRFYLSDNRSDEILGSDTNIWGKPWLIYTSSFYENN VLIPKFYEYFKYTNVTAGIGEAYTGVVLLSNDEFFLNRIEAYVMKNQFAEANAGLEYLFSLRTQGYNAATDKITEANIAA MYPVIADEYTPFYTLSPLQASYIKAIAEARRREYIQEGLRWFDIKRFNLVVEHITKENGKAVRTNVLVKDDKRRALQIPQ RASDNGIEKNPR
Sequences:
>Translated_492_residues MKNIKITLSLLLVISLSSCDEFLSEIPDNRTQIDTPEKISELLVTAYPSKSYAVIGETMSDNVFDSEMTSSDVDNRQSFN WEMQTQLGPDTEADFWNACYEAIAASNQALVAIDELGSPESLNPQKGEALIARAYNHFMLVSYWSQRYNPSSAATDLGVP YVTKPEGALLAQYKRNSVKEVFDLIEQDIIEGMKYITNNYKEPKYHFNIDAAKAFACRFYLIKGDWDKVLEYSKGLGSKP TTLRDYVAFNAAASAQKPLEYSKAEQPTNLLVAYPNSTARRGYTNRFYLSDNRSDEILGSDTNIWGKPWLIYTSSFYENN VLIPKFYEYFKYTNVTAGIGEAYTGVVLLSNDEFFLNRIEAYVMKNQFAEANAGLEYLFSLRTQGYNAATDKITEANIAA MYPVIADEYTPFYTLSPLQASYIKAIAEARRREYIQEGLRWFDIKRFNLVVEHITKENGKAVRTNVLVKDDKRRALQIPQ RASDNGIEKNPR >Mature_492_residues MKNIKITLSLLLVISLSSCDEFLSEIPDNRTQIDTPEKISELLVTAYPSKSYAVIGETMSDNVFDSEMTSSDVDNRQSFN WEMQTQLGPDTEADFWNACYEAIAASNQALVAIDELGSPESLNPQKGEALIARAYNHFMLVSYWSQRYNPSSAATDLGVP YVTKPEGALLAQYKRNSVKEVFDLIEQDIIEGMKYITNNYKEPKYHFNIDAAKAFACRFYLIKGDWDKVLEYSKGLGSKP TTLRDYVAFNAAASAQKPLEYSKAEQPTNLLVAYPNSTARRGYTNRFYLSDNRSDEILGSDTNIWGKPWLIYTSSFYENN VLIPKFYEYFKYTNVTAGIGEAYTGVVLLSNDEFFLNRIEAYVMKNQFAEANAGLEYLFSLRTQGYNAATDKITEANIAA MYPVIADEYTPFYTLSPLQASYIKAIAEARRREYIQEGLRWFDIKRFNLVVEHITKENGKAVRTNVLVKDDKRRALQIPQ RASDNGIEKNPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55938; Mature: 55938
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIKITLSLLLVISLSSCDEFLSEIPDNRTQIDTPEKISELLVTAYPSKSYAVIGETMS CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCEEEEECCCC DNVFDSEMTSSDVDNRQSFNWEMQTQLGPDTEADFWNACYEAIAASNQALVAIDELGSPE CCCCCCHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC SLNPQKGEALIARAYNHFMLVSYWSQRYNPSSAATDLGVPYVTKPEGALLAQYKRNSVKE CCCCCCCHHHHHHHHHHEEEEEHHHHCCCCCCCCHHCCCCCEECCCCHHHHHHHHHHHHH VFDLIEQDIIEGMKYITNNYKEPKYHFNIDAAKAFACRFYLIKGDWDKVLEYSKGLGSKP HHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHEEEEEEEEEECCHHHHHHHHCCCCCCC TTLRDYVAFNAAASAQKPLEYSKAEQPTNLLVAYPNSTARRGYTNRFYLSDNRSDEILGS CHHHHHHHHCCHHCCCCCCHHHCCCCCCEEEEECCCCHHHCCCCEEEEECCCCCCCCCCC DTNIWGKPWLIYTSSFYENNVLIPKFYEYFKYTNVTAGIGEAYTGVVLLSNDEFFLNRIE CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHH AYVMKNQFAEANAGLEYLFSLRTQGYNAATDKITEANIAAMYPVIADEYTPFYTLSPLQA HHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCCCCCCCHHHCCHHHHCCCCCEEEECCHHH SYIKAIAEARRREYIQEGLRWFDIKRFNLVVEHITKENGKAVRTNVLVKDDKRRALQIPQ HHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHCCCC RASDNGIEKNPR CCCCCCCCCCCC >Mature Secondary Structure MKNIKITLSLLLVISLSSCDEFLSEIPDNRTQIDTPEKISELLVTAYPSKSYAVIGETMS CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCEEEEECCCC DNVFDSEMTSSDVDNRQSFNWEMQTQLGPDTEADFWNACYEAIAASNQALVAIDELGSPE CCCCCCHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC SLNPQKGEALIARAYNHFMLVSYWSQRYNPSSAATDLGVPYVTKPEGALLAQYKRNSVKE CCCCCCCHHHHHHHHHHEEEEEHHHHCCCCCCCCHHCCCCCEECCCCHHHHHHHHHHHHH VFDLIEQDIIEGMKYITNNYKEPKYHFNIDAAKAFACRFYLIKGDWDKVLEYSKGLGSKP HHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHEEEEEEEEEECCHHHHHHHHCCCCCCC TTLRDYVAFNAAASAQKPLEYSKAEQPTNLLVAYPNSTARRGYTNRFYLSDNRSDEILGS CHHHHHHHHCCHHCCCCCCHHHCCCCCCEEEEECCCCHHHCCCCEEEEECCCCCCCCCCC DTNIWGKPWLIYTSSFYENNVLIPKFYEYFKYTNVTAGIGEAYTGVVLLSNDEFFLNRIE CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHH AYVMKNQFAEANAGLEYLFSLRTQGYNAATDKITEANIAAMYPVIADEYTPFYTLSPLQA HHHHHHHHHHHCCCHHHHHHHHCCCCCCHHCCCCCCCHHHCCHHHHCCCCCEEEECCHHH SYIKAIAEARRREYIQEGLRWFDIKRFNLVVEHITKENGKAVRTNVLVKDDKRRALQIPQ HHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHCCCC RASDNGIEKNPR CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA