| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146300408
Identifier: 146300408
GI number: 146300408
Start: 3156773
End: 3159022
Strand: Reverse
Name: 146300408
Synonym: Fjoh_2656
Alternate gene names: NA
Gene position: 3159022-3156773 (Counterclockwise)
Preceding gene: 146300415
Following gene: 146300407
Centisome position: 51.81
GC content: 40.27
Gene sequence:
>2250_bases ATGCAGGCTGAATCTGTCATTCCCTATTCACTGGATATCACTTTTTATAAACTAAAAATGATTAAAATGCATACAGTTAC ACCATGGAGCGCAACTGCTCAGGCAGATATTGAAAATAGTGAAATCCTTTGGGAGAAAAAAATTCTTTCATACACTTATC AATTTTACAATACGGGCGATTCGCTCTGGATTGTTGTCGTTATGCCCGATAATGGAAAAATAGCCTTTCGCGCCGCATTT GCTATGAACAGCTGTTTTGAAGTTACCAATCTTTTTGAAGACCAGGATACTATTATCGTAGTACTCAATTCCAGACTTGG CACTTATGAAGTTCGTGTTGATTTTACCTCTGCAGAAGTACCTGTTTTACATTACACCACGTCCTTTACAGCTAATGTCC CTCTTCTAATGCCATTTTGGCCGCGAGATATAATTCCGCTGACGCAAAGCGGGAATATTGCCAATACTGCAGGAACAATT CACATGGAACAGTTCGGATCCCGTTCAGGACTTCTTTTTGCGAGCATTACAAAACCGCAGACAGGTTCGTTTTTTTATTT TCAAAACCTTACCTCCTTATCCGAATATTGTGAAGCTACGGAAACGGAATCAAAAAATACGGTCGGGGGAAGCTGGCCCG AAATCGGGTTTCAGCTCCCAACAACTGACAAACTGCCTCTTCCGGCGGGAAAAGCATTCACTATCTCGAATGCCTATGTC GTTCTTCATAATGAAATATTTGAACAAACAACAATAATCTGCGAGCACTTTTTAAATAACCTGGTCACGATATATAAATT GCTTGAACAGCCGCGAATTGAATATCACAATTGGCCGGAAATCGCTCAGAAAGTAGTTTCAGATTTAAAGAATAATAAAG GTTCCTGGACGCAAAAGCAAGGCCTGCCGTATTTAAATGCCTACTTATGCGACTACGAAACCCCGCCTGAAAGTATGGTG CAGCTTGCTGTACTGGCTCCTTTTAAGGAATATGAAAAATGGAGCGGCGAAAAACAGCCTATCTGTGAAGATTTAACTAA AGGATTACCTGCATTTTATGATGAAAAAATAAACTGCATTAACCGCTGGCTTCCTTCGATGGTCGACAAACTGGACGAGT CCGAGGAGCAGAAAACAGAAATGGTGATGGATTCCTGGTATCTGCATCATCCGCTGATGAATCTTGCGCGACTTGCTTTA CGGGGCGATAAAACTGCAGAGAAACTAGTGCTTGACTCGATAGAATATGCTATAAGAACGGCACACCATTTTAATTATGA GTGGCCTGTATTTTATAACATGGAAACCCTTGAGGTAATCAAAAAAGAAACAGCACCTGGCGCTGGCGGGGAAAGGGATG TGCCGGGGGCATATGCGCATTTAATGCTCCTGCTTTTTAAATTAACCAAAGAAAAACGTTACCTGCACGAAGCAGAAAAA GCGGCAAAAAAACTGGAAGGCCTCGGATTAAATATTCTATATCAGGCCAATAACACTGCTTTTGCAGCCGGCGCTTTATT GGAATTATTCAAAATTACCAATAAAAAACTTTACCTCGATTTAAGTTACACCTGCCTGACAGGCTTATTTAAAAACATTC AGCTTTATGACTGCAGGTACGGATTTGGTAAAAATTATACCAATTTCTTCTCCATTTTTCCCTTAAATGATGCGCCTTAT ATCGCCGCTTATGAGGAGATGGAAGTCTATGCTGCCTTGTCAGAATATATAGTTCAGGCAGAAGATGTTGAGATTCTTCC GGCGCTGAGGACCCTAATTCCCGAGTTTATAAAATATGCTGTCGGCAGGATTGCCTATTATTATCCAGCAATGCTTCCTC TAGATATGATTTCTGAAAAAGTTAAAACCGGAGAAGTTCAGGCTGATCTGTGGATTCCACTTGAGGATTTATATAACGGC TGGGAGAAAAGCGGCCAAGTAGGCCAGGAAGTCTATGGCGCAGGAATGGCCTTTGGTGTCGTGCCAAGGCAGTACATCAA AATCGGTGATGAGTTTTTACTTTTTGTTGATTATCCCATTATTCACCAAAGTAAAAGAGGAAATACAGTCAGCATAAAAT TAGATGGTAATAAAGACTTGAACTGCAATTTGAAAATTATAAAAATTAAAAACAGCAGCATTAAAATGAAAGTCTTGCAG GATAAGCAAACACAGAAACCTTTTACAGCAAATGCGAATATACACGAGTATAAAATTTCAGGTCAGGGTACTGTTAAAAT TCAGTGGTAA
Upstream 100 bases:
>100_bases GAAATTACGGCCTATTAACTTATTTTCTTCTGCTCTCTATAGGAGCGGCGGCGACTGGTTTTGTTCTATTTAACTGAGAA TAATTTTGATGTGCTTCTGA
Downstream 100 bases:
>100_bases TTTTTTCTCCTGCACTTTAAAGGCACAGAAGGTGAAAGATGAACATAAGGGTCAACAAAAAAGAATGATCGCAATTAAGT TTCTTTTATAAATGCGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 749; Mature: 749
Protein sequence:
>749_residues MQAESVIPYSLDITFYKLKMIKMHTVTPWSATAQADIENSEILWEKKILSYTYQFYNTGDSLWIVVVMPDNGKIAFRAAF AMNSCFEVTNLFEDQDTIIVVLNSRLGTYEVRVDFTSAEVPVLHYTTSFTANVPLLMPFWPRDIIPLTQSGNIANTAGTI HMEQFGSRSGLLFASITKPQTGSFFYFQNLTSLSEYCEATETESKNTVGGSWPEIGFQLPTTDKLPLPAGKAFTISNAYV VLHNEIFEQTTIICEHFLNNLVTIYKLLEQPRIEYHNWPEIAQKVVSDLKNNKGSWTQKQGLPYLNAYLCDYETPPESMV QLAVLAPFKEYEKWSGEKQPICEDLTKGLPAFYDEKINCINRWLPSMVDKLDESEEQKTEMVMDSWYLHHPLMNLARLAL RGDKTAEKLVLDSIEYAIRTAHHFNYEWPVFYNMETLEVIKKETAPGAGGERDVPGAYAHLMLLLFKLTKEKRYLHEAEK AAKKLEGLGLNILYQANNTAFAAGALLELFKITNKKLYLDLSYTCLTGLFKNIQLYDCRYGFGKNYTNFFSIFPLNDAPY IAAYEEMEVYAALSEYIVQAEDVEILPALRTLIPEFIKYAVGRIAYYYPAMLPLDMISEKVKTGEVQADLWIPLEDLYNG WEKSGQVGQEVYGAGMAFGVVPRQYIKIGDEFLLFVDYPIIHQSKRGNTVSIKLDGNKDLNCNLKIIKIKNSSIKMKVLQ DKQTQKPFTANANIHEYKISGQGTVKIQW
Sequences:
>Translated_749_residues MQAESVIPYSLDITFYKLKMIKMHTVTPWSATAQADIENSEILWEKKILSYTYQFYNTGDSLWIVVVMPDNGKIAFRAAF AMNSCFEVTNLFEDQDTIIVVLNSRLGTYEVRVDFTSAEVPVLHYTTSFTANVPLLMPFWPRDIIPLTQSGNIANTAGTI HMEQFGSRSGLLFASITKPQTGSFFYFQNLTSLSEYCEATETESKNTVGGSWPEIGFQLPTTDKLPLPAGKAFTISNAYV VLHNEIFEQTTIICEHFLNNLVTIYKLLEQPRIEYHNWPEIAQKVVSDLKNNKGSWTQKQGLPYLNAYLCDYETPPESMV QLAVLAPFKEYEKWSGEKQPICEDLTKGLPAFYDEKINCINRWLPSMVDKLDESEEQKTEMVMDSWYLHHPLMNLARLAL RGDKTAEKLVLDSIEYAIRTAHHFNYEWPVFYNMETLEVIKKETAPGAGGERDVPGAYAHLMLLLFKLTKEKRYLHEAEK AAKKLEGLGLNILYQANNTAFAAGALLELFKITNKKLYLDLSYTCLTGLFKNIQLYDCRYGFGKNYTNFFSIFPLNDAPY IAAYEEMEVYAALSEYIVQAEDVEILPALRTLIPEFIKYAVGRIAYYYPAMLPLDMISEKVKTGEVQADLWIPLEDLYNG WEKSGQVGQEVYGAGMAFGVVPRQYIKIGDEFLLFVDYPIIHQSKRGNTVSIKLDGNKDLNCNLKIIKIKNSSIKMKVLQ DKQTQKPFTANANIHEYKISGQGTVKIQW >Mature_749_residues MQAESVIPYSLDITFYKLKMIKMHTVTPWSATAQADIENSEILWEKKILSYTYQFYNTGDSLWIVVVMPDNGKIAFRAAF AMNSCFEVTNLFEDQDTIIVVLNSRLGTYEVRVDFTSAEVPVLHYTTSFTANVPLLMPFWPRDIIPLTQSGNIANTAGTI HMEQFGSRSGLLFASITKPQTGSFFYFQNLTSLSEYCEATETESKNTVGGSWPEIGFQLPTTDKLPLPAGKAFTISNAYV VLHNEIFEQTTIICEHFLNNLVTIYKLLEQPRIEYHNWPEIAQKVVSDLKNNKGSWTQKQGLPYLNAYLCDYETPPESMV QLAVLAPFKEYEKWSGEKQPICEDLTKGLPAFYDEKINCINRWLPSMVDKLDESEEQKTEMVMDSWYLHHPLMNLARLAL RGDKTAEKLVLDSIEYAIRTAHHFNYEWPVFYNMETLEVIKKETAPGAGGERDVPGAYAHLMLLLFKLTKEKRYLHEAEK AAKKLEGLGLNILYQANNTAFAAGALLELFKITNKKLYLDLSYTCLTGLFKNIQLYDCRYGFGKNYTNFFSIFPLNDAPY IAAYEEMEVYAALSEYIVQAEDVEILPALRTLIPEFIKYAVGRIAYYYPAMLPLDMISEKVKTGEVQADLWIPLEDLYNG WEKSGQVGQEVYGAGMAFGVVPRQYIKIGDEFLLFVDYPIIHQSKRGNTVSIKLDGNKDLNCNLKIIKIKNSSIKMKVLQ DKQTQKPFTANANIHEYKISGQGTVKIQW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85437; Mature: 85437
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAESVIPYSLDITFYKLKMIKMHTVTPWSATAQADIENSEILWEKKILSYTYQFYNTGD CCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCC SLWIVVVMPDNGKIAFRAAFAMNSCFEVTNLFEDQDTIIVVLNSRLGTYEVRVDFTSAEV CEEEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCC PVLHYTTSFTANVPLLMPFWPRDIIPLTQSGNIANTAGTIHMEQFGSRSGLLFASITKPQ EEEEEEECCCCCCCEEECCCCCCCEEECCCCCCCCCCCEEEHHHCCCCCCEEEEEECCCC TGSFFYFQNLTSLSEYCEATETESKNTVGGSWPEIGFQLPTTDKLPLPAGKAFTISNAYV CCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCEEE VLHNEIFEQTTIICEHFLNNLVTIYKLLEQPRIEYHNWPEIAQKVVSDLKNNKGSWTQKQ EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHC GLPYLNAYLCDYETPPESMVQLAVLAPFKEYEKWSGEKQPICEDLTKGLPAFYDEKINCI CCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHH NRWLPSMVDKLDESEEQKTEMVMDSWYLHHPLMNLARLALRGDKTAEKLVLDSIEYAIRT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH AHHFNYEWPVFYNMETLEVIKKETAPGAGGERDVPGAYAHLMLLLFKLTKEKRYLHEAEK HHHCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AAKKLEGLGLNILYQANNTAFAAGALLELFKITNKKLYLDLSYTCLTGLFKNIQLYDCRY HHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCEEEEEEC GFGKNYTNFFSIFPLNDAPYIAAYEEMEVYAALSEYIVQAEDVEILPALRTLIPEFIKYA CCCCCCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH VGRIAYYYPAMLPLDMISEKVKTGEVQADLWIPLEDLYNGWEKSGQVGQEVYGAGMAFGV HHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEHHHHHCCHHHCCCHHHHHHHCCCEECC VPRQYIKIGDEFLLFVDYPIIHQSKRGNTVSIKLDGNKDLNCNLKIIKIKNSSIKMKVLQ CCHHHHHCCCEEEEEECCCEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCEEEEEEC DKQTQKPFTANANIHEYKISGQGTVKIQW CCCCCCCEECCCCEEEEEECCCEEEEEEC >Mature Secondary Structure MQAESVIPYSLDITFYKLKMIKMHTVTPWSATAQADIENSEILWEKKILSYTYQFYNTGD CCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECCC SLWIVVVMPDNGKIAFRAAFAMNSCFEVTNLFEDQDTIIVVLNSRLGTYEVRVDFTSAEV CEEEEEEECCCCCEEEEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCCC PVLHYTTSFTANVPLLMPFWPRDIIPLTQSGNIANTAGTIHMEQFGSRSGLLFASITKPQ EEEEEEECCCCCCCEEECCCCCCCEEECCCCCCCCCCCEEEHHHCCCCCCEEEEEECCCC TGSFFYFQNLTSLSEYCEATETESKNTVGGSWPEIGFQLPTTDKLPLPAGKAFTISNAYV CCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCEEE VLHNEIFEQTTIICEHFLNNLVTIYKLLEQPRIEYHNWPEIAQKVVSDLKNNKGSWTQKQ EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHC GLPYLNAYLCDYETPPESMVQLAVLAPFKEYEKWSGEKQPICEDLTKGLPAFYDEKINCI CCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHH NRWLPSMVDKLDESEEQKTEMVMDSWYLHHPLMNLARLALRGDKTAEKLVLDSIEYAIRT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH AHHFNYEWPVFYNMETLEVIKKETAPGAGGERDVPGAYAHLMLLLFKLTKEKRYLHEAEK HHHCCCCCCEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AAKKLEGLGLNILYQANNTAFAAGALLELFKITNKKLYLDLSYTCLTGLFKNIQLYDCRY HHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCEEEEEEC GFGKNYTNFFSIFPLNDAPYIAAYEEMEVYAALSEYIVQAEDVEILPALRTLIPEFIKYA CCCCCCCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH VGRIAYYYPAMLPLDMISEKVKTGEVQADLWIPLEDLYNGWEKSGQVGQEVYGAGMAFGV HHHHHHHHHHHCCHHHHHHHHHCCCEEEEEEEEHHHHHCCHHHCCCHHHHHHHCCCEECC VPRQYIKIGDEFLLFVDYPIIHQSKRGNTVSIKLDGNKDLNCNLKIIKIKNSSIKMKVLQ CCHHHHHCCCEEEEEECCCEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCEEEEEEC DKQTQKPFTANANIHEYKISGQGTVKIQW CCCCCCCEECCCCEEEEEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA