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The map label for this gene is sodA [H]

Identifier: 146300350

GI number: 146300350

Start: 3091447

End: 3092229

Strand: Reverse

Name: sodA [H]

Synonym: Fjoh_2595

Alternate gene names: 146300350

Gene position: 3092229-3091447 (Counterclockwise)

Preceding gene: 146300351

Following gene: 146300349

Centisome position: 50.72

GC content: 34.48

Gene sequence:

>783_bases
ATGAAGAAAATCATTGTTCTTTTCAGCATTTTACCTTCATTCATATTATTATTTTCCTGCAATGATAATAACAAACTGAC
TGAAGTTGTGGAAGTTCCTCTTCCTACAAAGGAAGAAAAAATAGTAATTGGATCACCAAATGATGTAAAAGCAGATCCCG
GTTCTTTTGAACTTACCAAACTGCCTTTTGCTTATGACGGACTAAGCCCTGCTTTACGATCTCTTACAATGGAGACGCAT
TATTCTAAACATTATTTGTCGTATACCAATAATTTTAACAAAGCTATTGTTTCGACTGAGTTTGAAAATATGCCAATTGA
GGATATTTTAAAGAAATTAGATTTAAACAATGCAAAACTGCGTCAGAATGCCGGAGGGTATTACAATCATACTCTCTATT
TTAATATTCTGACACCAAAAGAGCAGACACCAAAAGATACGCTTTCCGGCTCAATTAATAAAGAATTTGGCTCGTTTAAC
AACCTTACAACACAGTTTAAAGGACAAGCCGAAAAACAATTTGGTTCTGGCTGGGTTTGGTTAGTGGTTGACAGATACGG
AAAACTTCAAATAACAACTACTGAAGATCAGGACAACCCGCTGATGAAAAACGCTTTGATTCCGGGAACGCCAATTTTAG
GCATCGACTTATGGGAACATGCTTATTATCTGGATTATCAAAACAGAAAAGGAAGTTATATTGATGCTTTTTACGAACAT
ATAAATTGGGAAAAAGTAAACGAATATTATATCGAAGCCCTCAAAAAGGTTAAGAAAGTATAA

Upstream 100 bases:

>100_bases
AACTAATGCCTGGATGCAGATTAGTCATTTATCGACAGATGAAGCTAAGGAGAATTACATAGAAATTATCAATTCGCTAA
CATCAAAATAAATTAATATT

Downstream 100 bases:

>100_bases
CGTAAAAGAATAAAATGAATACAATAAAAGAGATCTTAAAAAAATTTTCAGAAAAAAATGACCTTTGGAATCTTACAAAA
ATTCATGGTATAGAATGCAT

Product: superoxide dismutase

Products: NA

Alternate protein names: MnSOD [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKKIIVLFSILPSFILLFSCNDNNKLTEVVEVPLPTKEEKIVIGSPNDVKADPGSFELTKLPFAYDGLSPALRSLTMETH
YSKHYLSYTNNFNKAIVSTEFENMPIEDILKKLDLNNAKLRQNAGGYYNHTLYFNILTPKEQTPKDTLSGSINKEFGSFN
NLTTQFKGQAEKQFGSGWVWLVVDRYGKLQITTTEDQDNPLMKNALIPGTPILGIDLWEHAYYLDYQNRKGSYIDAFYEH
INWEKVNEYYIEALKKVKKV

Sequences:

>Translated_260_residues
MKKIIVLFSILPSFILLFSCNDNNKLTEVVEVPLPTKEEKIVIGSPNDVKADPGSFELTKLPFAYDGLSPALRSLTMETH
YSKHYLSYTNNFNKAIVSTEFENMPIEDILKKLDLNNAKLRQNAGGYYNHTLYFNILTPKEQTPKDTLSGSINKEFGSFN
NLTTQFKGQAEKQFGSGWVWLVVDRYGKLQITTTEDQDNPLMKNALIPGTPILGIDLWEHAYYLDYQNRKGSYIDAFYEH
INWEKVNEYYIEALKKVKKV
>Mature_260_residues
MKKIIVLFSILPSFILLFSCNDNNKLTEVVEVPLPTKEEKIVIGSPNDVKADPGSFELTKLPFAYDGLSPALRSLTMETH
YSKHYLSYTNNFNKAIVSTEFENMPIEDILKKLDLNNAKLRQNAGGYYNHTLYFNILTPKEQTPKDTLSGSINKEFGSFN
NLTTQFKGQAEKQFGSGWVWLVVDRYGKLQITTTEDQDNPLMKNALIPGTPILGIDLWEHAYYLDYQNRKGSYIDAFYEH
INWEKVNEYYIEALKKVKKV

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=201, Percent_Identity=36.318407960199, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI67782305, Length=201, Percent_Identity=36.318407960199, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=30.6532663316583, Blast_Score=97, Evalue=1e-20,
Organism=Escherichia coli, GI1790342, Length=199, Percent_Identity=43.7185929648241, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=40.9326424870466, Blast_Score=157, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI17506561, Length=206, Percent_Identity=33.495145631068, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=32.994923857868, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6321796, Length=204, Percent_Identity=30.3921568627451, Blast_Score=105, Evalue=7e-24,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=36.4532019704434, Blast_Score=127, Evalue=6e-30,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 29870; Mature: 29870

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIVLFSILPSFILLFSCNDNNKLTEVVEVPLPTKEEKIVIGSPNDVKADPGSFELTK
CCCEEEHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEE
LPFAYDGLSPALRSLTMETHYSKHYLSYTNNFNKAIVSTEFENMPIEDILKKLDLNNAKL
CCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCHH
RQNAGGYYNHTLYFNILTPKEQTPKDTLSGSINKEFGSFNNLTTQFKGQAEKQFGSGWVW
HHCCCCEEEEEEEEEEECCCCCCCHHHHCCCCCHHCCCCCCCCHHCCCCHHHHCCCCEEE
LVVDRYGKLQITTTEDQDNPLMKNALIPGTPILGIDLWEHAYYLDYQNRKGSYIDAFYEH
EEEECCCEEEEEECCCCCCCHHHHCCCCCCCEEEEEHHCCEEEEEECCCCCCHHHHHHHH
INWEKVNEYYIEALKKVKKV
CCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKIIVLFSILPSFILLFSCNDNNKLTEVVEVPLPTKEEKIVIGSPNDVKADPGSFELTK
CCCEEEHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEE
LPFAYDGLSPALRSLTMETHYSKHYLSYTNNFNKAIVSTEFENMPIEDILKKLDLNNAKL
CCEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCHH
RQNAGGYYNHTLYFNILTPKEQTPKDTLSGSINKEFGSFNNLTTQFKGQAEKQFGSGWVW
HHCCCCEEEEEEEEEEECCCCCCCHHHHCCCCCHHCCCCCCCCHHCCCCHHHHCCCCEEE
LVVDRYGKLQITTTEDQDNPLMKNALIPGTPILGIDLWEHAYYLDYQNRKGSYIDAFYEH
EEEECCCEEEEEECCCCCCCHHHHCCCCCCCEEEEEHHCCEEEEEECCCCCCHHHHHHHH
INWEKVNEYYIEALKKVKKV
CCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]